Wall clock time and date at job start Mon Mar 30 2020 04:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47026 * 2 1 4 4 C 1.50695 * 109.47657 * 239.99264 * 2 1 3 5 5 H 1.07994 * 120.00693 * 240.00659 * 4 2 1 6 6 C 1.37886 * 119.99674 * 59.99693 * 4 2 1 7 7 N 1.31513 * 119.99983 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46700 * 90.00400 * 8 6 4 10 10 H 1.48499 * 109.47124 * 210.00288 * 8 6 4 11 11 H 1.48497 * 109.47502 * 330.00744 * 8 6 4 12 12 N 1.46504 * 109.47142 * 119.99456 * 2 1 3 13 13 C 1.34784 * 119.99895 * 275.00592 * 12 2 1 14 14 O 1.21283 * 119.99854 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99619 * 179.97438 * 13 12 2 16 16 H 1.08998 * 115.55237 * 52.01871 * 15 13 12 17 17 C 1.53000 * 117.49500 * 197.72723 * 15 13 12 18 18 C 1.52995 * 60.00160 * 107.48773 * 17 15 13 19 19 C 1.53004 * 117.49934 * 107.48649 * 18 17 15 20 20 C 1.50700 * 117.51984 * 252.51920 * 18 17 15 21 21 O 1.20821 * 119.99904 * 75.16487 * 20 18 17 22 22 O 1.34225 * 119.99661 * 255.16417 * 20 18 17 23 23 H 1.09001 * 109.47189 * 60.00654 * 1 2 3 24 24 H 1.09004 * 109.46947 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47272 * 300.00690 * 1 2 3 26 26 H 0.96994 * 119.99642 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00534 * 94.99720 * 12 2 1 28 28 H 1.09003 * 117.50098 * 214.98218 * 17 15 13 29 29 H 1.09005 * 117.50072 * 359.97438 * 17 15 13 30 30 H 1.09005 * 109.46734 * 351.38143 * 19 18 17 31 31 H 1.08991 * 109.46923 * 111.37586 * 19 18 17 32 32 H 1.08996 * 109.47025 * 231.38156 * 19 18 17 33 33 H 0.96707 * 117.00095 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9435 0.8299 -2.6035 8 14 2.3227 -1.1199 -4.0078 9 1 1.3450 -2.1620 -4.4121 10 1 2.4875 -0.1406 -5.1119 11 1 3.6310 -1.7569 -3.7117 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0180 2.3573 14 8 1.8588 1.1588 2.4115 15 6 2.6487 -0.7285 3.5879 16 1 3.5830 -1.2766 3.4663 17 6 2.3897 -0.0646 4.9418 18 6 1.6046 -1.3148 4.5402 19 6 1.9520 -2.6254 5.2493 20 6 0.1531 -1.1383 4.1754 21 8 -0.1474 -0.6576 3.1084 22 8 -0.8057 -1.5150 5.0358 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7095 1.1613 -3.4845 27 1 2.2490 -1.6316 1.1529 28 1 3.1538 -0.1756 5.7112 29 1 1.8567 0.8862 4.9424 30 1 2.8473 -2.4845 5.8549 31 1 1.1225 -2.9223 5.8908 32 1 2.1340 -3.4028 4.5072 33 1 -1.7223 -1.3817 4.7577 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713630726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:05 Heat of formation + Delta-G solvation = -107.061271 kcal Electronic energy + Delta-G solvation = -17851.480733 eV Core-core repulsion = 14878.065193 eV Total energy + Delta-G solvation = -2973.415540 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.66132 -38.70985 -36.67073 -35.82236 -34.52185 -32.20441 -29.33045 -28.51008 -25.12565 -24.62517 -23.84719 -20.74079 -20.06418 -19.16876 -17.78678 -17.40859 -15.99591 -15.66455 -15.22363 -14.90665 -14.49268 -14.09176 -13.56790 -13.44617 -13.16603 -12.61974 -12.35270 -12.24468 -11.80355 -11.51670 -11.39737 -11.06491 -10.87975 -10.68989 -10.48856 -10.28182 -10.18430 -10.10637 -10.06414 -8.89730 -8.86892 -8.44725 -7.68410 -6.02865 -4.11695 2.25476 2.90182 3.28743 3.31255 3.35116 3.37613 3.80567 4.20868 4.44742 4.58598 4.66724 4.95934 5.13673 5.28733 5.50174 5.55305 5.58301 5.70134 5.79451 6.00263 6.04081 6.60704 7.05090 7.29058 7.37265 7.66067 7.73785 7.84044 8.01554 8.13678 8.30088 8.84324 8.90999 9.32305 9.56213 11.02971 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037169 B = 0.006236 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.142058 B = 4489.262670 C = 4603.632801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.045 0.955 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.697 5.697 13 C 0.543 3.457 14 O -0.553 6.553 15 C -0.151 4.151 16 H 0.134 0.866 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.111 4.111 20 C 0.496 3.504 21 O -0.467 6.467 22 O -0.518 6.518 23 H 0.082 0.918 24 H 0.020 0.980 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.385 0.615 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 -7.357 15.428 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.168 3.832 3 H 0.063 0.937 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.343 5.343 13 C 0.327 3.673 14 O -0.432 6.432 15 C -0.172 4.172 16 H 0.152 0.848 17 C -0.155 4.155 18 C -0.124 4.124 19 C -0.168 4.168 20 C 0.335 3.665 21 O -0.351 6.351 22 O -0.331 6.331 23 H 0.100 0.900 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.216 0.784 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.213 -6.295 15.074 16.380 hybrid contribution -0.250 -0.936 -1.108 1.472 sum 0.962 -7.232 13.966 15.757 Atomic orbital electron populations 1.21953 0.98190 0.98823 1.00648 1.18667 0.91291 0.93578 0.79687 0.93744 1.21271 1.32199 1.13073 0.90539 0.92240 1.24891 0.94929 0.94986 0.98977 1.69926 1.36055 1.22491 1.23656 0.86472 0.79109 0.79266 0.82356 1.20633 1.21108 1.19908 1.46251 1.64726 1.13014 1.10331 1.19010 0.77967 0.86837 0.83506 1.90622 1.51632 1.16245 1.84745 1.22725 0.99304 1.03101 0.92098 0.84789 1.23200 1.00624 0.95209 0.96438 1.20961 0.86732 0.98863 1.05864 1.21357 1.02482 0.93083 0.99919 1.22151 0.87472 0.74950 0.81893 1.90940 1.82654 1.38506 1.22950 1.84429 1.20038 1.78983 1.49605 0.89952 0.96055 0.95827 0.92712 0.78387 0.86724 0.87034 0.91154 0.90706 0.91399 0.73174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.16 37.16 0.34 -3.41 16 2 C 0.27 7.34 2.56 -69.08 -0.18 7.16 16 3 H 0.04 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.81 8.73 -34.44 -0.30 -15.11 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.06 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -25.98 11.32 55.43 0.63 -25.35 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 N -0.70 -15.72 4.94 -54.93 -0.27 -15.99 16 13 C 0.54 11.58 4.85 -10.98 -0.05 11.53 16 14 O -0.55 -14.14 15.86 -6.42 -0.10 -14.24 16 15 C -0.15 -2.23 5.91 -91.77 -0.54 -2.78 16 16 H 0.13 1.57 8.14 -51.93 -0.42 1.14 16 17 C -0.12 -1.46 9.39 -26.73 -0.25 -1.71 16 18 C -0.12 -1.57 2.63 -155.66 -0.41 -1.98 16 19 C -0.11 -1.00 9.83 37.16 0.37 -0.63 16 20 C 0.50 7.57 7.78 36.01 0.28 7.85 16 21 O -0.47 -9.38 13.73 -23.47 -0.32 -9.70 16 22 O -0.52 -5.98 12.85 -39.25 -0.50 -6.49 16 23 H 0.08 2.40 6.07 -51.93 -0.32 2.08 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.64 7.30 -51.93 -0.38 0.26 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.38 7.63 8.54 -40.82 -0.35 7.28 16 28 H 0.11 1.00 8.05 -51.93 -0.42 0.58 16 29 H 0.11 1.63 7.78 -51.93 -0.40 1.23 16 30 H 0.07 0.49 7.90 -51.93 -0.41 0.08 16 31 H 0.07 0.64 7.60 -51.93 -0.39 0.25 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.41 3.24 9.10 45.56 0.41 3.65 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -35.42 286.10 -5.58 -41.00 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.46 Total: 7.54 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -0.84 Total: 2.65 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.36 Total: -41.35 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.93 Total: -30.43 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.42 -5.58 -41.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713630726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.059 kcal (2) G-P(sol) polarization free energy of solvation -35.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds