Wall clock time and date at job start Mon Mar 30 2020 04:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47026 * 2 1 4 4 C 1.50695 * 109.47657 * 239.99264 * 2 1 3 5 5 H 1.07994 * 120.00693 * 240.00659 * 4 2 1 6 6 C 1.37886 * 119.99674 * 59.99693 * 4 2 1 7 7 N 1.31513 * 119.99983 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46700 * 90.00400 * 8 6 4 10 10 H 1.48499 * 109.47124 * 210.00288 * 8 6 4 11 11 H 1.48497 * 109.47502 * 330.00744 * 8 6 4 12 12 N 1.46504 * 109.47142 * 119.99456 * 2 1 3 13 13 C 1.34784 * 119.99895 * 275.00592 * 12 2 1 14 14 O 1.21283 * 119.99854 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99619 * 179.97438 * 13 12 2 16 16 H 1.08998 * 115.55237 * 52.01871 * 15 13 12 17 17 C 1.53000 * 117.49500 * 197.72723 * 15 13 12 18 18 C 1.52995 * 60.00160 * 107.48773 * 17 15 13 19 19 C 1.53004 * 117.49934 * 107.48649 * 18 17 15 20 20 C 1.50700 * 117.51984 * 252.51920 * 18 17 15 21 21 O 1.20821 * 119.99904 * 75.16487 * 20 18 17 22 22 O 1.34225 * 119.99661 * 255.16417 * 20 18 17 23 23 H 1.09001 * 109.47189 * 60.00654 * 1 2 3 24 24 H 1.09004 * 109.46947 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47272 * 300.00690 * 1 2 3 26 26 H 0.96994 * 119.99642 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00534 * 94.99720 * 12 2 1 28 28 H 1.09003 * 117.50098 * 214.98218 * 17 15 13 29 29 H 1.09005 * 117.50072 * 359.97438 * 17 15 13 30 30 H 1.09005 * 109.46734 * 351.38143 * 19 18 17 31 31 H 1.08991 * 109.46923 * 111.37586 * 19 18 17 32 32 H 1.08996 * 109.47025 * 231.38156 * 19 18 17 33 33 H 0.96707 * 117.00095 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9435 0.8299 -2.6035 8 14 2.3227 -1.1199 -4.0078 9 1 1.3450 -2.1620 -4.4121 10 1 2.4875 -0.1406 -5.1119 11 1 3.6310 -1.7569 -3.7117 12 7 2.0183 -0.6905 1.1963 13 6 2.1469 -0.0180 2.3573 14 8 1.8588 1.1588 2.4115 15 6 2.6487 -0.7285 3.5879 16 1 3.5830 -1.2766 3.4663 17 6 2.3897 -0.0646 4.9418 18 6 1.6046 -1.3148 4.5402 19 6 1.9520 -2.6254 5.2493 20 6 0.1531 -1.1383 4.1754 21 8 -0.1474 -0.6576 3.1084 22 8 -0.8057 -1.5150 5.0358 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7095 1.1613 -3.4845 27 1 2.2490 -1.6316 1.1529 28 1 3.1538 -0.1756 5.7112 29 1 1.8567 0.8862 4.9424 30 1 2.8473 -2.4845 5.8549 31 1 1.1225 -2.9223 5.8908 32 1 2.1340 -3.4028 4.5072 33 1 -1.7223 -1.3817 4.7577 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713630726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:04 Heat of formation + Delta-G solvation = -134.192966 kcal Electronic energy + Delta-G solvation = -17852.657252 eV Core-core repulsion = 14878.065193 eV Total energy + Delta-G solvation = -2974.592058 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.89388 -40.22768 -37.98092 -37.01570 -36.51374 -34.25395 -31.04523 -29.72146 -27.34254 -25.72196 -25.25147 -22.51236 -21.33388 -20.81722 -19.21058 -18.74242 -17.84506 -17.16637 -16.76714 -16.47417 -15.87644 -15.73014 -14.98701 -14.88612 -14.36181 -14.16812 -13.79584 -13.58836 -13.22957 -13.00528 -12.86126 -12.83177 -12.69724 -12.55253 -12.27974 -12.15129 -11.69727 -11.33380 -11.24751 -11.08327 -10.67304 -10.53615 -9.63697 -8.17531 -6.36050 1.08350 1.42689 1.44699 1.55472 1.72550 2.03054 2.35890 2.57687 2.84044 3.11801 3.50938 3.62076 3.90513 4.17077 4.25325 4.64235 4.76281 4.78872 4.92162 4.99957 5.01443 5.03895 5.15105 5.36078 5.44122 5.60394 5.63835 5.73492 5.93810 6.11425 6.73175 6.98946 7.05671 7.32363 7.67236 8.89243 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.037169 B = 0.006236 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.142058 B = 4489.262670 C = 4603.632801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.278 3.722 3 H -0.009 1.009 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.978 3.022 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.697 5.697 13 C 0.536 3.464 14 O -0.606 6.606 15 C -0.165 4.165 16 H 0.175 0.825 17 C -0.103 4.103 18 C -0.112 4.112 19 C -0.104 4.104 20 C 0.492 3.508 21 O -0.527 6.527 22 O -0.502 6.502 23 H 0.059 0.941 24 H 0.026 0.974 25 H 0.009 0.991 26 H 0.265 0.735 27 H 0.399 0.601 28 H 0.166 0.834 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.746 -10.013 16.852 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.174 3.826 3 H 0.009 0.991 4 C -0.587 4.587 5 H 0.092 0.908 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.802 3.198 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.185 1.185 12 N -0.344 5.344 13 C 0.324 3.676 14 O -0.489 6.489 15 C -0.186 4.186 16 H 0.192 0.808 17 C -0.140 4.140 18 C -0.113 4.113 19 C -0.161 4.161 20 C 0.334 3.666 21 O -0.415 6.415 22 O -0.316 6.316 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.233 0.767 28 H 0.183 0.817 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 2.762 -9.004 16.559 19.050 hybrid contribution -0.830 -0.054 -1.460 1.681 sum 1.931 -9.058 15.099 17.713 Atomic orbital electron populations 1.21702 0.98659 0.98370 0.98706 1.18213 0.90830 0.91494 0.82074 0.99065 1.21595 1.32598 1.13561 0.90904 0.90784 1.25903 0.94859 0.95610 1.02569 1.70089 1.37157 1.24102 1.24572 0.85267 0.79032 0.77959 0.77587 1.19674 1.21033 1.18471 1.46008 1.65009 1.13600 1.09778 1.20078 0.76371 0.86417 0.84779 1.90585 1.53694 1.18919 1.85735 1.22659 1.01515 1.04793 0.89626 0.80791 1.23397 1.00995 0.93771 0.95844 1.21217 0.84557 1.01119 1.04457 1.21441 1.04096 0.90498 1.00053 1.22817 0.89142 0.73412 0.81210 1.90935 1.83700 1.41318 1.25571 1.84395 1.20887 1.77927 1.48350 0.92244 0.95502 0.97217 0.92577 0.76650 0.81660 0.90017 0.87980 0.90131 0.90736 0.71380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.62 9.16 71.98 0.66 -5.96 16 2 C 0.28 15.78 2.56 44.24 0.11 15.89 16 3 H -0.01 -0.57 7.58 -2.39 -0.02 -0.59 16 4 C -0.55 -30.89 8.73 25.60 0.22 -30.67 16 5 H 0.07 3.86 7.74 -2.91 -0.02 3.83 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -55.77 11.32 21.45 0.24 -55.52 16 8 Si 0.98 43.57 29.54 68.60 2.03 45.59 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 12 N -0.70 -32.08 4.94 -446.09 -2.20 -34.29 16 13 C 0.54 23.31 4.85 87.66 0.42 23.73 16 14 O -0.61 -32.65 15.86 8.41 0.13 -32.52 16 15 C -0.17 -4.54 5.91 -11.54 -0.07 -4.61 16 16 H 0.17 3.35 8.14 -2.39 -0.02 3.33 16 17 C -0.10 -2.28 9.39 30.59 0.29 -1.99 16 18 C -0.11 -2.55 2.63 -52.93 -0.14 -2.69 16 19 C -0.10 -1.37 9.83 71.98 0.71 -0.66 16 20 C 0.49 14.60 7.78 71.24 0.55 15.15 16 21 O -0.53 -21.76 13.73 26.49 0.36 -21.40 16 22 O -0.50 -10.76 12.85 -51.37 -0.66 -11.42 16 23 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 24 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.01 0.52 7.30 -2.39 -0.02 0.51 16 26 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 27 H 0.40 15.71 8.54 -92.71 -0.79 14.92 16 28 H 0.17 1.97 8.05 -2.39 -0.02 1.95 16 29 H 0.08 2.35 7.78 -2.38 -0.02 2.33 16 30 H 0.10 0.76 7.90 -2.38 -0.02 0.74 16 31 H 0.08 1.02 7.60 -2.39 -0.02 1.00 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.43 6.26 9.10 -74.05 -0.67 5.58 16 Total: -1.00 -82.33 286.10 2.79 -79.53 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.32 Total: 20.79 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 3.21 Total: 9.22 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -1.96 Total: -89.81 kcal Atomic # 8 Polarization: -65.17 SS G_CDS: -0.16 Total: -65.33 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -82.33 2.79 -79.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713630726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.661 kcal (2) G-P(sol) polarization free energy of solvation -82.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds