Wall clock time and date at job start Mon Mar 30 2020 04:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47685 * 2 1 4 4 C 1.50702 * 109.47103 * 239.99619 * 2 1 3 5 5 H 1.07998 * 120.00618 * 240.00315 * 4 2 1 6 6 C 1.37881 * 119.99868 * 59.99921 * 4 2 1 7 7 N 1.31519 * 119.99915 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00101 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46663 * 90.00537 * 8 6 4 10 10 H 1.48496 * 109.47345 * 210.00452 * 8 6 4 11 11 H 1.48496 * 109.47503 * 330.00812 * 8 6 4 12 12 N 1.46501 * 109.47057 * 120.00210 * 2 1 3 13 13 C 1.34783 * 119.99603 * 274.99816 * 12 2 1 14 14 O 1.21275 * 120.00183 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99687 * 180.02562 * 13 12 2 16 16 H 1.09001 * 115.55460 * 34.27333 * 15 13 12 17 17 C 1.53006 * 117.49508 * 248.60743 * 15 13 12 18 18 C 1.52997 * 117.49950 * 179.97438 * 15 13 12 19 19 C 1.53006 * 117.49537 * 359.97438 * 18 15 13 20 20 C 1.50699 * 117.50247 * 214.97927 * 18 15 13 21 21 O 1.20831 * 119.99736 * 359.97438 * 20 18 15 22 22 O 1.34223 * 120.00242 * 179.97438 * 20 18 15 23 23 H 1.08997 * 109.47107 * 59.99984 * 1 2 3 24 24 H 1.08996 * 109.47685 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47020 * 300.00136 * 1 2 3 26 26 H 0.96997 * 120.00079 * 179.97438 * 7 6 4 27 27 H 0.96994 * 120.00358 * 94.99408 * 12 2 1 28 28 H 1.08990 * 117.50086 * 359.97438 * 17 15 13 29 29 H 1.09004 * 117.49623 * 145.02605 * 17 15 13 30 30 H 1.09005 * 109.46967 * 180.02562 * 19 18 15 31 31 H 1.09000 * 109.47392 * 300.01595 * 19 18 15 32 32 H 1.09004 * 109.46938 * 60.02111 * 19 18 15 33 33 H 0.96703 * 117.00307 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3445 -2.1617 -4.4123 10 1 2.4872 -0.1405 -5.1120 11 1 3.6306 -1.7569 -3.7120 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8591 1.1586 2.4115 15 6 2.6499 -0.7285 3.5874 16 1 3.3937 -1.5054 3.4108 17 6 1.6581 -0.9472 4.7318 18 6 2.7744 0.0897 4.8742 19 6 2.3794 1.5666 4.8133 20 6 3.9163 -0.2400 5.8008 21 8 4.6906 -1.1225 5.5151 22 8 4.0733 0.4467 6.9433 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7094 1.1617 -3.4844 27 1 2.2489 -1.6318 1.1527 28 1 0.6421 -0.5770 4.5950 29 1 1.7498 -1.8678 5.3083 30 1 2.5184 2.0207 5.7944 31 1 3.0051 2.0803 4.0834 32 1 1.3333 1.6511 4.5186 33 1 4.8205 0.1995 7.5050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713630732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:06 Heat of formation + Delta-G solvation = -109.570247 kcal Electronic energy + Delta-G solvation = -17320.205557 eV Core-core repulsion = 14346.681220 eV Total energy + Delta-G solvation = -2973.524337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79786 -39.19190 -36.74805 -36.01975 -34.64165 -32.40130 -29.46034 -28.32307 -25.27981 -24.84376 -23.83837 -21.15986 -20.03128 -19.25122 -17.98137 -17.12445 -16.75049 -15.74092 -15.47550 -15.17443 -14.38776 -14.27625 -13.79946 -13.34126 -12.89793 -12.48491 -12.38961 -12.24944 -12.08202 -11.70081 -11.66535 -11.10414 -10.98412 -10.79869 -10.71354 -10.34427 -10.26817 -10.24642 -10.12331 -9.06113 -8.92250 -8.56187 -7.93340 -6.13373 -4.22566 1.95544 2.73941 3.05848 3.24386 3.31365 3.33908 3.82168 4.05430 4.36509 4.47314 4.78559 4.97504 5.12272 5.19422 5.44073 5.60883 5.72063 5.93072 6.02679 6.13505 6.33076 6.59898 6.80618 6.94344 7.12697 7.43122 7.54289 7.68267 7.77482 7.89866 8.13369 8.64037 8.76348 9.08834 9.45028 10.92612 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.044603 B = 0.005081 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.612874 B = 5509.040076 C = 5790.779563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.701 5.701 13 C 0.530 3.470 14 O -0.546 6.546 15 C -0.150 4.150 16 H 0.132 0.868 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.098 4.098 20 C 0.519 3.481 21 O -0.515 6.515 22 O -0.508 6.508 23 H 0.090 0.910 24 H 0.026 0.974 25 H 0.015 0.985 26 H 0.264 0.736 27 H 0.390 0.610 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 -3.018 15.055 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.348 5.348 13 C 0.314 3.686 14 O -0.426 6.426 15 C -0.171 4.171 16 H 0.150 0.850 17 C -0.157 4.157 18 C -0.114 4.114 19 C -0.155 4.155 20 C 0.362 3.638 21 O -0.404 6.404 22 O -0.319 6.319 23 H 0.109 0.891 24 H 0.046 0.954 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.223 0.777 28 H 0.135 0.865 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.832 -2.168 14.561 14.835 hybrid contribution 1.051 -1.219 -0.536 1.696 sum 2.882 -3.387 14.025 14.714 Atomic orbital electron populations 1.22073 0.98370 0.99144 1.00911 1.18775 0.91067 0.94010 0.79865 0.93263 1.21224 1.32469 1.13254 0.90312 0.92039 1.24885 0.94801 0.94933 0.99063 1.69901 1.35934 1.22393 1.23902 0.86438 0.79196 0.79263 0.82155 1.20533 1.21061 1.19846 1.46481 1.64514 1.13632 1.10183 1.19275 0.78673 0.86933 0.83701 1.90663 1.51519 1.15620 1.84764 1.22567 1.03495 1.02013 0.89070 0.84971 1.23205 0.95082 0.98586 0.98806 1.20898 0.96368 0.97769 0.96411 1.21332 1.03696 0.89110 1.01321 1.22224 0.84225 0.77803 0.79582 1.90716 1.44302 1.31202 1.74149 1.84509 1.53201 1.61410 1.32794 0.89137 0.95447 0.96628 0.92566 0.77735 0.86516 0.87459 0.92393 0.90703 0.90339 0.73219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.23 16 2 C 0.26 6.65 2.56 -69.08 -0.18 6.47 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.76 11.32 55.43 0.63 -24.13 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.70 -14.46 5.07 -54.93 -0.28 -14.73 16 13 C 0.53 10.29 7.56 -10.98 -0.08 10.21 16 14 O -0.55 -12.17 12.77 5.56 0.07 -12.10 16 15 C -0.15 -2.26 5.70 -91.77 -0.52 -2.78 16 16 H 0.13 1.90 7.67 -51.93 -0.40 1.50 16 17 C -0.12 -1.44 9.59 -26.71 -0.26 -1.69 16 18 C -0.11 -1.55 2.64 -155.65 -0.41 -1.96 16 19 C -0.10 -1.39 8.05 37.16 0.30 -1.09 16 20 C 0.52 6.76 7.87 36.01 0.28 7.04 16 21 O -0.52 -7.95 17.02 -18.75 -0.32 -8.27 16 22 O -0.51 -4.96 12.69 -39.24 -0.50 -5.46 16 23 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.39 7.04 8.54 -40.82 -0.35 6.69 16 28 H 0.12 1.37 8.05 -51.93 -0.42 0.95 16 29 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.70 7.49 -51.93 -0.39 0.32 16 31 H 0.07 1.22 7.26 -51.93 -0.38 0.84 16 32 H 0.08 1.19 7.02 -51.93 -0.36 0.82 16 33 H 0.41 2.04 9.10 45.56 0.41 2.46 16 LS Contribution 286.23 15.07 4.31 4.31 Total: -1.00 -31.60 286.23 -5.42 -37.02 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.40 Total: 7.53 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -0.92 Total: 0.23 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.35 Total: -38.87 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.75 Total: -25.83 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.60 -5.42 -37.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713630732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.553 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds