Wall clock time and date at job start Mon Mar 30 2020 04:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47685 * 2 1 4 4 C 1.50702 * 109.47103 * 239.99619 * 2 1 3 5 5 H 1.07998 * 120.00618 * 240.00315 * 4 2 1 6 6 C 1.37881 * 119.99868 * 59.99921 * 4 2 1 7 7 N 1.31519 * 119.99915 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00101 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46663 * 90.00537 * 8 6 4 10 10 H 1.48496 * 109.47345 * 210.00452 * 8 6 4 11 11 H 1.48496 * 109.47503 * 330.00812 * 8 6 4 12 12 N 1.46501 * 109.47057 * 120.00210 * 2 1 3 13 13 C 1.34783 * 119.99603 * 274.99816 * 12 2 1 14 14 O 1.21275 * 120.00183 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99687 * 180.02562 * 13 12 2 16 16 H 1.09001 * 115.55460 * 34.27333 * 15 13 12 17 17 C 1.53006 * 117.49508 * 248.60743 * 15 13 12 18 18 C 1.52997 * 117.49950 * 179.97438 * 15 13 12 19 19 C 1.53006 * 117.49537 * 359.97438 * 18 15 13 20 20 C 1.50699 * 117.50247 * 214.97927 * 18 15 13 21 21 O 1.20831 * 119.99736 * 359.97438 * 20 18 15 22 22 O 1.34223 * 120.00242 * 179.97438 * 20 18 15 23 23 H 1.08997 * 109.47107 * 59.99984 * 1 2 3 24 24 H 1.08996 * 109.47685 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47020 * 300.00136 * 1 2 3 26 26 H 0.96997 * 120.00079 * 179.97438 * 7 6 4 27 27 H 0.96994 * 120.00358 * 94.99408 * 12 2 1 28 28 H 1.08990 * 117.50086 * 359.97438 * 17 15 13 29 29 H 1.09004 * 117.49623 * 145.02605 * 17 15 13 30 30 H 1.09005 * 109.46967 * 180.02562 * 19 18 15 31 31 H 1.09000 * 109.47392 * 300.01595 * 19 18 15 32 32 H 1.09004 * 109.46938 * 60.02111 * 19 18 15 33 33 H 0.96703 * 117.00307 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3445 -2.1617 -4.4123 10 1 2.4872 -0.1405 -5.1120 11 1 3.6306 -1.7569 -3.7120 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8591 1.1586 2.4115 15 6 2.6499 -0.7285 3.5874 16 1 3.3937 -1.5054 3.4108 17 6 1.6581 -0.9472 4.7318 18 6 2.7744 0.0897 4.8742 19 6 2.3794 1.5666 4.8133 20 6 3.9163 -0.2400 5.8008 21 8 4.6906 -1.1225 5.5151 22 8 4.0733 0.4467 6.9433 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7094 1.1617 -3.4844 27 1 2.2489 -1.6318 1.1527 28 1 0.6421 -0.5770 4.5950 29 1 1.7498 -1.8678 5.3083 30 1 2.5184 2.0207 5.7944 31 1 3.0051 2.0803 4.0834 32 1 1.3333 1.6511 4.5186 33 1 4.8205 0.1995 7.5050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713630732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:06 Heat of formation + Delta-G solvation = -132.263121 kcal Electronic energy + Delta-G solvation = -17321.189594 eV Core-core repulsion = 14346.681220 eV Total energy + Delta-G solvation = -2974.508374 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.89773 -40.56818 -37.99071 -37.07617 -36.41109 -34.31845 -31.19462 -29.65419 -27.33331 -26.03520 -25.06957 -22.73171 -21.41729 -20.75701 -18.95017 -18.67550 -18.12390 -17.15947 -16.96380 -16.66253 -15.98499 -15.80885 -15.00035 -14.90356 -14.37599 -14.11219 -13.73643 -13.60776 -13.31831 -13.20221 -12.94095 -12.84549 -12.69227 -12.59799 -12.27197 -12.13672 -11.84826 -11.40301 -11.25855 -11.09455 -10.63712 -10.46118 -9.73093 -8.17616 -6.34796 0.94595 1.44937 1.45843 1.55973 1.59856 1.85506 2.37031 2.59056 2.72976 3.12845 3.34497 3.67070 3.82871 4.10171 4.22449 4.58224 4.67062 4.77449 4.89256 4.93480 4.94427 4.96459 5.10839 5.39510 5.46443 5.52350 5.62410 5.71067 5.91572 6.11228 6.72809 6.95032 6.96634 7.32374 7.54099 8.88519 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.044603 B = 0.005081 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.612874 B = 5509.040076 C = 5790.779563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H 0.000 1.000 4 C -0.549 4.549 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.266 1.266 12 N -0.701 5.701 13 C 0.527 3.473 14 O -0.580 6.580 15 C -0.163 4.163 16 H 0.143 0.857 17 C -0.089 4.089 18 C -0.120 4.120 19 C -0.091 4.091 20 C 0.529 3.471 21 O -0.542 6.542 22 O -0.498 6.498 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.016 0.984 26 H 0.266 0.734 27 H 0.404 0.596 28 H 0.121 0.879 29 H 0.139 0.861 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -4.709 16.317 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.018 0.982 4 C -0.587 4.587 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.191 1.191 12 N -0.349 5.349 13 C 0.314 3.686 14 O -0.462 6.462 15 C -0.184 4.184 16 H 0.161 0.839 17 C -0.126 4.126 18 C -0.122 4.122 19 C -0.148 4.148 20 C 0.373 3.627 21 O -0.433 6.433 22 O -0.312 6.312 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.239 0.761 28 H 0.139 0.861 29 H 0.157 0.843 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 2.290 -3.880 15.876 16.503 hybrid contribution 0.924 -0.601 -0.832 1.381 sum 3.214 -4.482 15.044 16.023 Atomic orbital electron populations 1.21876 0.97977 0.99499 0.99727 1.18364 0.91322 0.91892 0.81666 0.98189 1.21554 1.32618 1.13555 0.90941 0.91100 1.25771 0.94873 0.95560 1.02234 1.70046 1.37004 1.23816 1.24609 0.85354 0.78920 0.78074 0.78039 1.19549 1.21188 1.19073 1.46242 1.64916 1.14233 1.09517 1.19973 0.77555 0.86605 0.84464 1.90653 1.52776 1.17311 1.85429 1.22345 1.05630 1.02725 0.87679 0.83944 1.23386 0.94399 0.98985 0.95865 1.20942 0.97803 0.97594 0.95817 1.21200 1.02218 0.89741 1.01616 1.21902 0.83360 0.77413 0.80024 1.90717 1.45073 1.32508 1.74953 1.84445 1.54363 1.60462 1.31893 0.91599 0.94117 0.96456 0.92531 0.76081 0.86078 0.84304 0.90129 0.93523 0.91608 0.70511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 9.26 71.98 0.67 -5.91 16 2 C 0.27 13.96 2.56 44.24 0.11 14.08 16 3 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 4 C -0.55 -29.10 8.73 25.60 0.22 -28.88 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.02 0.85 5.30 84.65 0.45 1.29 16 7 N -0.92 -52.39 11.32 21.45 0.24 -52.15 16 8 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 12 N -0.70 -29.00 5.07 -446.10 -2.26 -31.26 16 13 C 0.53 20.57 7.56 87.66 0.66 21.23 16 14 O -0.58 -26.64 12.77 -3.01 -0.04 -26.68 16 15 C -0.16 -4.66 5.70 -11.54 -0.07 -4.73 16 16 H 0.14 3.83 7.67 -2.39 -0.02 3.81 16 17 C -0.09 -1.90 9.59 30.60 0.29 -1.60 16 18 C -0.12 -3.07 2.64 -52.92 -0.14 -3.21 16 19 C -0.09 -2.53 8.05 71.98 0.58 -1.95 16 20 C 0.53 12.45 7.87 71.24 0.56 13.01 16 21 O -0.54 -15.47 17.02 21.95 0.37 -15.10 16 22 O -0.50 -8.14 12.69 -51.35 -0.65 -8.80 16 23 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 24 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.40 14.29 8.54 -92.71 -0.79 13.50 16 28 H 0.12 2.52 8.05 -2.39 -0.02 2.50 16 29 H 0.14 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.08 1.83 7.49 -2.38 -0.02 1.81 16 31 H 0.05 1.55 7.26 -2.39 -0.02 1.53 16 32 H 0.06 1.98 7.02 -2.39 -0.02 1.96 16 33 H 0.43 2.83 9.10 -74.06 -0.67 2.16 16 Total: -1.00 -69.19 286.23 2.72 -66.48 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.32 Total: 20.08 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 3.34 Total: 3.33 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.02 Total: -83.41 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.32 Total: -50.58 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -69.19 2.72 -66.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713630732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.787 kcal (2) G-P(sol) polarization free energy of solvation -69.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds