Wall clock time and date at job start Mon Mar 30 2020 04:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47575 * 2 1 4 4 C 1.50704 * 109.47437 * 239.99891 * 2 1 3 5 5 H 1.07991 * 120.00485 * 245.37813 * 4 2 1 6 6 C 1.37878 * 119.99530 * 65.37286 * 4 2 1 7 7 N 1.31514 * 119.99926 * 185.16741 * 6 4 2 8 8 Si 1.86804 * 119.99995 * 5.17415 * 6 4 2 9 9 H 1.48501 * 109.46712 * 269.99418 * 8 6 4 10 10 H 1.48498 * 109.47164 * 149.99677 * 8 6 4 11 11 H 1.48492 * 109.47398 * 29.99475 * 8 6 4 12 12 N 1.46503 * 109.46916 * 120.00375 * 2 1 3 13 13 C 1.34783 * 119.99934 * 274.99480 * 12 2 1 14 14 O 1.21281 * 119.99605 * 0.02562 * 13 12 2 15 15 C 1.50693 * 119.99920 * 179.97438 * 13 12 2 16 16 H 1.08998 * 115.55295 * 325.67740 * 15 13 12 17 17 C 1.53002 * 117.49773 * 111.38326 * 15 13 12 18 18 C 1.52994 * 60.00244 * 107.48878 * 17 15 13 19 19 C 1.53003 * 117.49971 * 252.51304 * 18 17 15 20 20 C 1.50706 * 117.51842 * 107.47869 * 18 17 15 21 21 O 1.20826 * 119.99892 * 291.37282 * 20 18 17 22 22 O 1.34223 * 119.99598 * 111.37161 * 20 18 17 23 23 H 1.09007 * 109.46922 * 294.97657 * 1 2 3 24 24 H 1.09006 * 109.46813 * 54.97326 * 1 2 3 25 25 H 1.08994 * 109.47232 * 174.97307 * 1 2 3 26 26 H 0.97001 * 120.00050 * 355.00132 * 7 6 4 27 27 H 0.97002 * 120.00228 * 94.99825 * 12 2 1 28 28 H 1.09001 * 117.49867 * 214.98486 * 17 15 13 29 29 H 1.09000 * 117.49856 * 359.97438 * 17 15 13 30 30 H 1.08997 * 109.47036 * 128.62045 * 19 18 17 31 31 H 1.09002 * 109.46615 * 248.61883 * 19 18 17 32 32 H 1.09000 * 109.47080 * 8.61977 * 19 18 17 33 33 H 0.96699 * 116.99829 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7931 -0.1783 -2.4797 7 7 2.1413 -0.8472 -3.5571 8 14 0.9743 1.4930 -2.6418 9 1 -0.4989 1.3180 -2.7073 10 1 1.4493 2.1588 -3.8812 11 1 1.3216 2.3305 -1.4658 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0184 2.3572 14 8 1.8583 1.1583 2.4117 15 6 2.6488 -0.7290 3.5877 16 1 2.3509 -1.7732 3.6819 17 6 4.0306 -0.3377 4.1154 18 6 2.7729 0.0891 4.8747 19 6 2.3779 1.5660 4.8138 20 6 2.4737 -0.6106 6.1755 21 8 2.1501 -1.7748 6.1748 22 8 2.5669 0.0594 7.3348 23 1 -0.3633 0.4340 0.9316 24 1 -0.3633 0.5899 -0.8416 25 1 -0.3633 -1.0236 -0.0900 26 1 2.6311 -1.6803 -3.4736 27 1 2.2489 -1.6319 1.1526 28 1 4.6422 -1.1247 4.5566 29 1 4.5770 0.4334 3.5722 30 1 1.3321 1.6506 4.5184 31 1 2.5161 2.0198 5.7952 32 1 3.0042 2.0798 4.0845 33 1 2.3658 -0.4318 8.1431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713630737.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:08 Heat of formation + Delta-G solvation = -109.245546 kcal Electronic energy + Delta-G solvation = -17396.418934 eV Core-core repulsion = 14422.908677 eV Total energy + Delta-G solvation = -2973.510257 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.88817 -39.34439 -36.88848 -36.11549 -34.82634 -32.47288 -30.07455 -28.59903 -25.10773 -24.77310 -23.89707 -21.09743 -19.99406 -19.47790 -18.05443 -17.67794 -17.07929 -16.03474 -15.74526 -15.30014 -14.52720 -14.08647 -13.80546 -13.28945 -13.08006 -12.69931 -12.53626 -12.35495 -12.27195 -12.12221 -11.76976 -11.65830 -11.46767 -10.83985 -10.56627 -10.39689 -10.23116 -10.09058 -9.79426 -9.11682 -8.88076 -8.58111 -8.21320 -6.57346 -4.25807 1.88079 2.64966 2.92088 3.34583 3.43646 3.57388 3.69405 3.92696 4.37603 4.39615 4.68623 4.87069 5.03658 5.19730 5.32213 5.50305 5.63426 5.83992 5.94120 6.03661 6.26328 6.33947 6.41347 6.50958 6.59545 6.86483 7.24494 7.32205 7.60763 7.70463 8.20597 8.41838 8.66618 8.91419 9.45183 10.83325 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.047568 B = 0.005404 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.484783 B = 5179.873456 C = 5384.861466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.235 3.765 3 H 0.049 0.951 4 C -0.609 4.609 5 H 0.062 0.938 6 C 0.035 3.965 7 N -0.905 5.905 8 Si 1.052 2.948 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.694 5.694 13 C 0.531 3.469 14 O -0.548 6.548 15 C -0.151 4.151 16 H 0.133 0.867 17 C -0.118 4.118 18 C -0.112 4.112 19 C -0.098 4.098 20 C 0.519 3.481 21 O -0.515 6.515 22 O -0.507 6.507 23 H 0.033 0.967 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.268 0.732 27 H 0.395 0.605 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 1.470 17.883 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.132 3.868 3 H 0.067 0.933 4 C -0.648 4.648 5 H 0.080 0.920 6 C -0.170 4.170 7 N -0.539 5.539 8 Si 0.880 3.120 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.341 5.341 13 C 0.316 3.684 14 O -0.427 6.427 15 C -0.172 4.172 16 H 0.151 0.849 17 C -0.155 4.155 18 C -0.114 4.114 19 C -0.155 4.155 20 C 0.362 3.638 21 O -0.403 6.403 22 O -0.319 6.319 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.228 0.772 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.219 3.289 16.394 16.765 hybrid contribution 0.490 -2.242 1.631 2.816 sum 1.709 1.047 18.025 18.136 Atomic orbital electron populations 1.22405 0.99141 1.00918 0.99280 1.19236 0.90363 0.94754 0.82431 0.93285 1.22165 1.40795 1.10714 0.91090 0.91958 1.25708 0.96198 1.03526 0.91597 1.70830 1.36150 1.16703 1.30201 0.83910 0.76446 0.75536 0.76068 1.20814 1.21418 1.19984 1.46221 1.64422 1.13886 1.09596 1.19338 0.78528 0.86882 0.83663 1.90659 1.51507 1.15719 1.84802 1.22517 1.01666 1.00891 0.92165 0.84875 1.23216 0.89082 1.03390 0.99832 1.20903 1.05780 0.98135 0.86600 1.21336 1.03722 0.88847 1.01596 1.22197 0.72452 0.84312 0.84865 1.90718 1.43985 1.17941 1.87697 1.84506 1.82246 1.47947 1.17178 0.94761 0.93103 0.93092 0.92134 0.77239 0.87326 0.86392 0.90777 0.92272 0.90309 0.73149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.07 37.16 0.34 -3.21 16 2 C 0.24 5.59 2.14 -69.08 -0.15 5.44 16 3 H 0.05 1.26 6.08 -51.93 -0.32 0.95 16 4 C -0.61 -16.38 9.10 -34.44 -0.31 -16.69 16 5 H 0.06 1.75 7.95 -52.49 -0.42 1.33 16 6 C 0.04 0.99 5.43 -17.82 -0.10 0.90 16 7 N -0.91 -27.03 13.70 55.43 0.76 -26.27 16 8 Si 1.05 25.25 25.29 -169.99 -4.30 20.95 16 9 H -0.28 -6.42 6.81 56.52 0.38 -6.03 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.34 6.36 56.52 0.36 -5.98 16 12 N -0.69 -13.85 5.07 -54.93 -0.28 -14.12 16 13 C 0.53 9.82 7.56 -10.99 -0.08 9.74 16 14 O -0.55 -11.46 12.77 5.56 0.07 -11.39 16 15 C -0.15 -2.18 5.70 -91.77 -0.52 -2.71 16 16 H 0.13 1.83 7.67 -51.93 -0.40 1.43 16 17 C -0.12 -1.39 9.58 -26.73 -0.26 -1.64 16 18 C -0.11 -1.48 2.64 -155.66 -0.41 -1.89 16 19 C -0.10 -1.32 8.05 37.16 0.30 -1.02 16 20 C 0.52 6.46 7.87 36.01 0.28 6.74 16 21 O -0.52 -7.65 17.02 -18.75 -0.32 -7.97 16 22 O -0.51 -4.68 12.69 -39.24 -0.50 -5.18 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 1.14 4.40 -51.93 -0.23 0.91 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.27 7.93 8.72 -40.82 -0.36 7.57 16 27 H 0.39 7.08 8.53 -40.82 -0.35 6.73 16 28 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.12 1.36 8.05 -51.93 -0.42 0.95 16 30 H 0.07 1.12 7.26 -51.93 -0.38 0.75 16 31 H 0.06 0.68 7.49 -51.93 -0.39 0.29 16 32 H 0.08 1.13 7.02 -51.93 -0.36 0.77 16 33 H 0.41 1.84 9.10 45.56 0.41 2.26 16 LS Contribution 280.63 15.07 4.23 4.23 Total: -1.00 -32.49 280.63 -4.57 -37.05 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.32 Total: 7.03 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.91 Total: -4.34 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.48 Total: -40.39 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.75 Total: -24.54 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -4.30 Total: 20.95 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.49 -4.57 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713630737.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.193 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds