Wall clock time and date at job start Mon Mar 30 2020 04:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47575 * 2 1 4 4 C 1.50704 * 109.47437 * 239.99891 * 2 1 3 5 5 H 1.07991 * 120.00485 * 245.37813 * 4 2 1 6 6 C 1.37878 * 119.99530 * 65.37286 * 4 2 1 7 7 N 1.31514 * 119.99926 * 185.16741 * 6 4 2 8 8 Si 1.86804 * 119.99995 * 5.17415 * 6 4 2 9 9 H 1.48501 * 109.46712 * 269.99418 * 8 6 4 10 10 H 1.48498 * 109.47164 * 149.99677 * 8 6 4 11 11 H 1.48492 * 109.47398 * 29.99475 * 8 6 4 12 12 N 1.46503 * 109.46916 * 120.00375 * 2 1 3 13 13 C 1.34783 * 119.99934 * 274.99480 * 12 2 1 14 14 O 1.21281 * 119.99605 * 0.02562 * 13 12 2 15 15 C 1.50693 * 119.99920 * 179.97438 * 13 12 2 16 16 H 1.08998 * 115.55295 * 325.67740 * 15 13 12 17 17 C 1.53002 * 117.49773 * 111.38326 * 15 13 12 18 18 C 1.52994 * 60.00244 * 107.48878 * 17 15 13 19 19 C 1.53003 * 117.49971 * 252.51304 * 18 17 15 20 20 C 1.50706 * 117.51842 * 107.47869 * 18 17 15 21 21 O 1.20826 * 119.99892 * 291.37282 * 20 18 17 22 22 O 1.34223 * 119.99598 * 111.37161 * 20 18 17 23 23 H 1.09007 * 109.46922 * 294.97657 * 1 2 3 24 24 H 1.09006 * 109.46813 * 54.97326 * 1 2 3 25 25 H 1.08994 * 109.47232 * 174.97307 * 1 2 3 26 26 H 0.97001 * 120.00050 * 355.00132 * 7 6 4 27 27 H 0.97002 * 120.00228 * 94.99825 * 12 2 1 28 28 H 1.09001 * 117.49867 * 214.98486 * 17 15 13 29 29 H 1.09000 * 117.49856 * 359.97438 * 17 15 13 30 30 H 1.08997 * 109.47036 * 128.62045 * 19 18 17 31 31 H 1.09002 * 109.46615 * 248.61883 * 19 18 17 32 32 H 1.09000 * 109.47080 * 8.61977 * 19 18 17 33 33 H 0.96699 * 116.99829 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7931 -0.1783 -2.4797 7 7 2.1413 -0.8472 -3.5571 8 14 0.9743 1.4930 -2.6418 9 1 -0.4989 1.3180 -2.7073 10 1 1.4493 2.1588 -3.8812 11 1 1.3216 2.3305 -1.4658 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0184 2.3572 14 8 1.8583 1.1583 2.4117 15 6 2.6488 -0.7290 3.5877 16 1 2.3509 -1.7732 3.6819 17 6 4.0306 -0.3377 4.1154 18 6 2.7729 0.0891 4.8747 19 6 2.3779 1.5660 4.8138 20 6 2.4737 -0.6106 6.1755 21 8 2.1501 -1.7748 6.1748 22 8 2.5669 0.0594 7.3348 23 1 -0.3633 0.4340 0.9316 24 1 -0.3633 0.5899 -0.8416 25 1 -0.3633 -1.0236 -0.0900 26 1 2.6311 -1.6803 -3.4736 27 1 2.2489 -1.6319 1.1526 28 1 4.6422 -1.1247 4.5566 29 1 4.5770 0.4334 3.5722 30 1 1.3321 1.6506 4.5184 31 1 2.5161 2.0198 5.7952 32 1 3.0042 2.0798 4.0845 33 1 2.3658 -0.4318 8.1431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713630737.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:07 Heat of formation + Delta-G solvation = -133.755051 kcal Electronic energy + Delta-G solvation = -17397.481746 eV Core-core repulsion = 14422.908677 eV Total energy + Delta-G solvation = -2974.573069 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.94217 -40.64947 -38.08778 -37.11681 -36.50503 -34.46865 -31.81207 -29.75589 -26.92359 -26.05995 -25.10924 -22.55052 -21.44577 -20.90545 -19.60176 -18.95710 -18.26468 -17.34499 -17.01559 -16.69472 -15.87247 -15.67148 -15.05075 -14.94191 -14.61406 -14.23974 -14.12366 -13.73582 -13.55970 -13.40304 -13.19683 -13.17069 -12.61828 -12.46974 -11.97423 -11.88384 -11.67706 -11.43552 -11.30024 -10.95736 -10.70749 -10.58555 -9.91751 -8.79008 -6.48244 0.91887 1.42401 1.51313 1.52404 1.69293 1.80133 2.40697 2.46197 2.65530 3.03784 3.31047 3.61239 3.76768 4.01614 4.18958 4.47032 4.55742 4.63287 4.65244 4.74450 4.85060 4.92804 4.95126 5.02171 5.39280 5.41283 5.50583 5.61684 5.62852 5.98836 6.49800 6.80019 6.93587 7.26543 7.39164 8.60766 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.047568 B = 0.005404 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.484783 B = 5179.873456 C = 5384.861466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.239 3.761 3 H 0.031 0.969 4 C -0.604 4.604 5 H 0.040 0.960 6 C -0.011 4.011 7 N -0.936 5.936 8 Si 1.083 2.917 9 H -0.260 1.260 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.699 5.699 13 C 0.532 3.468 14 O -0.573 6.573 15 C -0.164 4.164 16 H 0.142 0.858 17 C -0.095 4.095 18 C -0.115 4.115 19 C -0.092 4.092 20 C 0.529 3.471 21 O -0.542 6.542 22 O -0.498 6.498 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.257 0.743 27 H 0.403 0.597 28 H 0.136 0.864 29 H 0.121 0.879 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 2.009 19.975 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.135 3.865 3 H 0.049 0.951 4 C -0.642 4.642 5 H 0.059 0.941 6 C -0.210 4.210 7 N -0.572 5.572 8 Si 0.906 3.094 9 H -0.185 1.185 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.347 5.347 13 C 0.319 3.681 14 O -0.454 6.454 15 C -0.185 4.185 16 H 0.160 0.840 17 C -0.132 4.132 18 C -0.117 4.117 19 C -0.149 4.149 20 C 0.373 3.627 21 O -0.433 6.433 22 O -0.311 6.311 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.238 0.762 28 H 0.154 0.846 29 H 0.139 0.861 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 1.221 3.811 18.545 18.972 hybrid contribution 0.546 -2.419 1.096 2.711 sum 1.767 1.392 19.641 19.770 Atomic orbital electron populations 1.22299 0.97734 1.01276 0.99861 1.18918 0.91355 0.93550 0.82724 0.95100 1.22345 1.39562 1.09776 0.92548 0.94142 1.26895 0.96534 1.05965 0.91632 1.70933 1.38068 1.16965 1.31215 0.83511 0.77093 0.72353 0.76426 1.18494 1.21354 1.18775 1.46079 1.65051 1.14323 1.09252 1.19911 0.77474 0.86602 0.84146 1.90649 1.52379 1.17009 1.85323 1.22332 1.04286 1.00989 0.90920 0.84018 1.23380 0.88074 1.03656 0.98117 1.20944 1.06515 0.97573 0.86668 1.21229 1.02017 0.89290 1.02343 1.21906 0.71793 0.83703 0.85331 1.90721 1.45391 1.19036 1.88152 1.84444 1.81522 1.47781 1.17376 0.93595 0.93189 0.92736 0.93358 0.76213 0.84622 0.86112 0.92918 0.90139 0.91528 0.70479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.63 9.07 71.98 0.65 -5.98 16 2 C 0.24 11.23 2.14 44.25 0.09 11.33 16 3 H 0.03 1.58 6.08 -2.39 -0.01 1.57 16 4 C -0.60 -32.71 9.10 25.60 0.23 -32.48 16 5 H 0.04 2.32 7.95 -2.92 -0.02 2.29 16 6 C -0.01 -0.61 5.43 84.65 0.46 -0.15 16 7 N -0.94 -56.77 13.70 21.45 0.29 -56.48 16 8 Si 1.08 50.29 25.29 68.60 1.73 52.02 16 9 H -0.26 -11.10 6.81 99.48 0.68 -10.42 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.26 -11.64 6.36 99.48 0.63 -11.01 16 12 N -0.70 -27.47 5.07 -446.09 -2.26 -29.73 16 13 C 0.53 19.16 7.56 87.65 0.66 19.83 16 14 O -0.57 -23.59 12.77 -3.03 -0.04 -23.63 16 15 C -0.16 -4.45 5.70 -11.54 -0.07 -4.52 16 16 H 0.14 3.63 7.67 -2.39 -0.02 3.61 16 17 C -0.10 -1.98 9.58 30.59 0.29 -1.69 16 18 C -0.12 -2.76 2.64 -52.93 -0.14 -2.90 16 19 C -0.09 -2.31 8.05 71.98 0.58 -1.73 16 20 C 0.53 11.69 7.87 71.24 0.56 12.25 16 21 O -0.54 -14.83 17.02 21.96 0.37 -14.46 16 22 O -0.50 -7.48 12.69 -51.35 -0.65 -8.13 16 23 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.05 2.15 4.40 -2.38 -0.01 2.14 16 25 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.26 15.64 8.72 -92.71 -0.81 14.83 16 27 H 0.40 14.29 8.53 -92.71 -0.79 13.50 16 28 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.12 2.49 8.05 -2.39 -0.02 2.47 16 30 H 0.05 1.55 7.26 -2.39 -0.02 1.53 16 31 H 0.08 1.64 7.49 -2.39 -0.02 1.63 16 32 H 0.07 1.83 7.02 -2.39 -0.02 1.81 16 33 H 0.43 2.33 9.10 -74.06 -0.67 1.66 16 Total: -1.00 -69.48 280.63 2.33 -67.15 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -0.45 Total: 19.29 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 3.33 Total: -6.04 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -1.97 Total: -86.21 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.32 Total: -46.21 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.73 Total: 52.02 kcal Total: -69.48 2.33 -67.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713630737.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.603 kcal (2) G-P(sol) polarization free energy of solvation -69.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds