Wall clock time and date at job start Mon Mar 30 2020 03:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48496 * 109.47298 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47408 * 29.99829 * 3 2 1 6 6 H 1.48504 * 109.47193 * 149.99789 * 3 2 1 7 7 C 1.38815 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99821 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.48342 * 125.80401 * 359.97438 * 9 7 2 11 11 C 1.52515 * 106.04658 * 176.94345 * 10 9 7 12 12 H 1.09001 * 109.43661 * 272.55629 * 11 10 9 13 13 C 1.51350 * 118.78290 * 145.10384 * 11 10 9 14 14 O 1.43927 * 106.55439 * 182.74391 * 13 11 10 15 15 C 1.42336 * 116.95264 * 57.54803 * 14 13 11 16 16 C 1.53976 * 112.06483 * 306.42858 * 15 14 13 17 17 C 1.51644 * 106.61865 * 54.28414 * 16 15 14 18 18 C 1.50699 * 110.68681 * 57.87875 * 17 16 15 19 19 O 1.20827 * 120.00518 * 7.53947 * 18 17 16 20 20 O 1.34233 * 120.00031 * 187.53226 * 18 17 16 21 21 C 1.48755 * 125.80088 * 180.02562 * 9 7 2 22 22 H 0.97003 * 119.99337 * 0.02562 * 1 2 3 23 23 H 1.08993 * 110.20256 * 295.49775 * 10 9 7 24 24 H 1.09002 * 110.19267 * 57.28864 * 10 9 7 25 25 H 1.09005 * 110.03127 * 63.48938 * 13 11 10 26 26 H 1.09001 * 110.03525 * 302.00370 * 13 11 10 27 27 H 1.09004 * 108.95988 * 67.09379 * 15 14 13 28 28 H 1.09001 * 108.96462 * 185.76005 * 15 14 13 29 29 H 1.09002 * 110.01750 * 173.55765 * 16 15 14 30 30 H 1.08996 * 110.02135 * 294.90224 * 16 15 14 31 31 H 0.96699 * 117.00252 * 179.97438 * 20 18 17 32 32 H 1.09005 * 110.65475 * 37.03815 * 21 9 7 33 33 H 1.09002 * 110.65036 * 273.95965 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1503 -2.5380 0.0005 11 6 -0.4218 -4.0368 -0.0776 12 1 -0.4468 -4.3469 -1.1223 13 6 -1.6180 -4.6001 0.6589 14 8 -1.5862 -6.0256 0.4630 15 6 -0.4112 -6.7088 0.8856 16 6 0.8638 -6.0985 0.2751 17 6 0.8446 -4.6214 0.6177 18 6 0.7799 -4.4217 2.1100 19 8 0.8884 -5.3694 2.8516 20 8 0.6019 -3.1910 2.6153 21 6 1.9352 -3.7450 0.0016 22 1 -0.4849 0.8401 -0.0004 23 1 -0.5693 -2.1380 0.9238 24 1 -0.5805 -2.0260 -0.8602 25 1 -2.5387 -4.1870 0.2467 26 1 -1.5459 -4.3675 1.7213 27 1 -0.3433 -6.6575 1.9723 28 1 -0.4822 -7.7543 0.5857 29 1 1.7467 -6.5702 0.7067 30 1 0.8607 -6.2325 -0.8065 31 1 0.5666 -3.1128 3.5785 32 1 2.8350 -3.7617 0.6167 33 1 2.1578 -4.0672 -1.0156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715821145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:20 Heat of formation + Delta-G solvation = -94.484862 kcal Electronic energy + Delta-G solvation = -18950.533504 eV Core-core repulsion = 15977.663318 eV Total energy + Delta-G solvation = -2972.870186 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06976 -38.30355 -36.48983 -35.57370 -33.02532 -31.46005 -30.17743 -27.46489 -25.84969 -23.97353 -22.63291 -22.20897 -20.01682 -19.27808 -17.53725 -16.90428 -16.05603 -15.64844 -15.27608 -15.13714 -14.59929 -14.27254 -13.86967 -13.46876 -12.95287 -12.51400 -12.33663 -12.31191 -11.51680 -11.45484 -11.39201 -11.02448 -10.88124 -10.84927 -10.28926 -10.14420 -10.08889 -9.97190 -9.66311 -9.59667 -9.11870 -8.61873 -6.86403 -5.71691 -3.04200 2.59220 3.39602 3.44828 3.46462 3.53106 4.00738 4.44981 4.67502 4.92926 5.06665 5.22336 5.48471 5.52680 5.58552 5.71460 5.81465 5.85397 5.94547 5.99674 6.17792 6.18945 6.26041 6.37834 6.44556 6.56251 6.99678 7.47502 7.50289 7.59844 7.80845 8.18570 8.42568 9.17263 9.77618 10.43472 11.40726 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.008374 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.267778 B = 3343.048484 C = 3486.737841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.192 3.808 11 C -0.141 4.141 12 H 0.086 0.914 13 C 0.078 3.922 14 O -0.394 6.394 15 C 0.051 3.949 16 C -0.123 4.123 17 C -0.086 4.086 18 C 0.503 3.497 19 O -0.538 6.538 20 O -0.472 6.472 21 C 0.154 3.846 22 H 0.252 0.748 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.394 0.606 32 H 0.044 0.956 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 -9.507 1.729 9.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.068 3.932 11 C -0.161 4.161 12 H 0.105 0.895 13 C 0.002 3.998 14 O -0.313 6.313 15 C -0.026 4.026 16 C -0.161 4.161 17 C -0.088 4.088 18 C 0.348 3.652 19 O -0.430 6.430 20 O -0.279 6.279 21 C 0.028 3.972 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.120 0.880 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.250 0.750 32 H 0.062 0.938 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.069 -9.616 1.416 9.778 hybrid contribution 0.784 1.076 0.790 1.548 sum -0.285 -8.540 2.206 8.825 Atomic orbital electron populations 1.69931 1.04790 1.24931 1.57073 1.24738 0.95695 0.97435 1.02326 0.86136 0.78545 0.83633 0.77496 1.21703 1.21741 1.20848 1.18985 0.90263 0.82143 1.43656 0.90542 1.44960 1.01007 0.99062 1.87286 1.20883 0.84513 0.85923 1.01923 1.23011 0.92518 1.00945 0.99606 0.89521 1.22321 0.99034 0.79924 0.98562 1.87703 1.38502 1.20234 1.84885 1.22820 0.84243 0.95527 0.99999 1.21871 0.99507 0.92759 1.01969 1.21460 1.02222 0.96895 0.88243 1.23014 0.70417 0.80102 0.91682 1.90583 1.48203 1.42562 1.61670 1.84970 1.82800 1.31476 1.28639 1.21253 0.92796 0.85947 0.97218 0.93804 0.92786 0.92356 0.87963 0.93488 0.91356 0.89384 0.90210 0.89751 0.74973 0.93770 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.11 10.37 55.49 0.58 -25.53 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -6.00 10.30 -15.06 -0.16 -6.15 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.56 2.88 -170.25 -0.49 -15.05 16 10 C 0.19 4.42 4.28 -3.28 -0.01 4.41 16 11 C -0.14 -2.61 2.27 -90.18 -0.21 -2.82 16 12 H 0.09 1.57 7.99 -51.93 -0.41 1.15 16 13 C 0.08 1.31 6.56 36.32 0.24 1.55 16 14 O -0.39 -6.54 10.63 -35.23 -0.37 -6.92 16 15 C 0.05 0.76 6.50 37.67 0.24 1.01 16 16 C -0.12 -1.84 5.13 -26.91 -0.14 -1.97 16 17 C -0.09 -1.54 0.75 -154.89 -0.12 -1.66 16 18 C 0.50 9.36 4.93 36.01 0.18 9.54 16 19 O -0.54 -10.24 14.64 -18.75 -0.27 -10.51 16 20 O -0.47 -8.86 10.65 -39.27 -0.42 -9.28 16 21 C 0.15 3.10 6.34 -2.86 -0.02 3.08 16 22 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 23 H 0.05 1.36 6.51 -51.93 -0.34 1.02 16 24 H 0.06 1.50 7.28 -51.93 -0.38 1.12 16 25 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 26 H 0.05 0.82 6.62 -51.93 -0.34 0.47 16 27 H 0.07 1.13 5.61 -51.93 -0.29 0.84 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 30 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 31 H 0.39 5.46 9.10 45.56 0.41 5.88 16 32 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 260.48 15.07 3.93 3.93 Total: -1.00 -30.93 260.48 -5.59 -36.51 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.42 Total: 3.41 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -0.08 Total: 6.74 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.08 Total: -40.58 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -1.07 Total: -26.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.93 -5.59 -36.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715821145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.971 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds