Wall clock time and date at job start Mon Mar 30 2020 03:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48496 * 109.47298 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47408 * 29.99829 * 3 2 1 6 6 H 1.48504 * 109.47193 * 149.99789 * 3 2 1 7 7 C 1.38815 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99821 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99997 * 0.02562 * 7 2 1 10 10 C 1.48342 * 125.80401 * 359.97438 * 9 7 2 11 11 C 1.52515 * 106.04658 * 176.94345 * 10 9 7 12 12 H 1.09001 * 109.43661 * 272.55629 * 11 10 9 13 13 C 1.51350 * 118.78290 * 145.10384 * 11 10 9 14 14 O 1.43927 * 106.55439 * 182.74391 * 13 11 10 15 15 C 1.42336 * 116.95264 * 57.54803 * 14 13 11 16 16 C 1.53976 * 112.06483 * 306.42858 * 15 14 13 17 17 C 1.51644 * 106.61865 * 54.28414 * 16 15 14 18 18 C 1.50699 * 110.68681 * 57.87875 * 17 16 15 19 19 O 1.20827 * 120.00518 * 7.53947 * 18 17 16 20 20 O 1.34233 * 120.00031 * 187.53226 * 18 17 16 21 21 C 1.48755 * 125.80088 * 180.02562 * 9 7 2 22 22 H 0.97003 * 119.99337 * 0.02562 * 1 2 3 23 23 H 1.08993 * 110.20256 * 295.49775 * 10 9 7 24 24 H 1.09002 * 110.19267 * 57.28864 * 10 9 7 25 25 H 1.09005 * 110.03127 * 63.48938 * 13 11 10 26 26 H 1.09001 * 110.03525 * 302.00370 * 13 11 10 27 27 H 1.09004 * 108.95988 * 67.09379 * 15 14 13 28 28 H 1.09001 * 108.96462 * 185.76005 * 15 14 13 29 29 H 1.09002 * 110.01750 * 173.55765 * 16 15 14 30 30 H 1.08996 * 110.02135 * 294.90224 * 16 15 14 31 31 H 0.96699 * 117.00252 * 179.97438 * 20 18 17 32 32 H 1.09005 * 110.65475 * 37.03815 * 21 9 7 33 33 H 1.09002 * 110.65036 * 273.95965 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1503 -2.5380 0.0005 11 6 -0.4218 -4.0368 -0.0776 12 1 -0.4468 -4.3469 -1.1223 13 6 -1.6180 -4.6001 0.6589 14 8 -1.5862 -6.0256 0.4630 15 6 -0.4112 -6.7088 0.8856 16 6 0.8638 -6.0985 0.2751 17 6 0.8446 -4.6214 0.6177 18 6 0.7799 -4.4217 2.1100 19 8 0.8884 -5.3694 2.8516 20 8 0.6019 -3.1910 2.6153 21 6 1.9352 -3.7450 0.0016 22 1 -0.4849 0.8401 -0.0004 23 1 -0.5693 -2.1380 0.9238 24 1 -0.5805 -2.0260 -0.8602 25 1 -2.5387 -4.1870 0.2467 26 1 -1.5459 -4.3675 1.7213 27 1 -0.3433 -6.6575 1.9723 28 1 -0.4822 -7.7543 0.5857 29 1 1.7467 -6.5702 0.7067 30 1 0.8607 -6.2325 -0.8065 31 1 0.5666 -3.1128 3.5785 32 1 2.8350 -3.7617 0.6167 33 1 2.1578 -4.0672 -1.0156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715821145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:20 Heat of formation + Delta-G solvation = -116.133652 kcal Electronic energy + Delta-G solvation = -18951.472266 eV Core-core repulsion = 15977.663318 eV Total energy + Delta-G solvation = -2973.808948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.51619 -39.73830 -38.04813 -37.04000 -34.81285 -32.91612 -31.93266 -29.00862 -27.63726 -25.50686 -24.18287 -23.64401 -21.70633 -20.70645 -19.10993 -18.73016 -17.46380 -17.02662 -16.90056 -16.68008 -16.17775 -15.73478 -15.47209 -15.09722 -14.42954 -14.13376 -13.88193 -13.78528 -13.15638 -12.98372 -12.84620 -12.76327 -12.63051 -12.47759 -11.99140 -11.86686 -11.77885 -11.58727 -11.26117 -11.05218 -10.64775 -10.45474 -8.84300 -7.78384 -5.11604 1.12217 1.49725 1.50285 1.58459 2.17684 2.51705 2.75513 3.24035 3.39722 3.45607 3.68447 3.79590 4.13726 4.20688 4.31304 4.43087 4.51439 4.64914 4.73693 4.74823 4.76869 4.91644 4.93704 4.99502 5.11962 5.48098 5.62077 5.68492 5.85047 6.21077 6.24694 7.05763 7.13250 7.77999 8.44448 9.32482 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.008374 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.267778 B = 3343.048484 C = 3486.737841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.615 5.615 10 C 0.205 3.795 11 C -0.130 4.130 12 H 0.096 0.904 13 C 0.083 3.917 14 O -0.396 6.396 15 C 0.048 3.952 16 C -0.117 4.117 17 C -0.081 4.081 18 C 0.503 3.497 19 O -0.542 6.542 20 O -0.491 6.491 21 C 0.151 3.849 22 H 0.245 0.755 23 H 0.026 0.974 24 H 0.023 0.977 25 H 0.116 0.884 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.411 0.589 32 H 0.044 0.956 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 -10.985 1.496 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.342 5.342 10 C 0.081 3.919 11 C -0.150 4.150 12 H 0.114 0.886 13 C 0.007 3.993 14 O -0.315 6.315 15 C -0.028 4.028 16 C -0.155 4.155 17 C -0.083 4.083 18 C 0.347 3.653 19 O -0.434 6.434 20 O -0.301 6.301 21 C 0.026 3.974 22 H 0.054 0.946 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.134 0.866 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.270 0.730 32 H 0.062 0.938 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.423 -11.130 1.197 11.202 hybrid contribution 0.624 1.499 0.897 1.855 sum 0.201 -9.631 2.094 9.858 Atomic orbital electron populations 1.70134 1.05971 1.24960 1.58369 1.25475 0.96513 1.00376 1.02961 0.85174 0.77591 0.79822 0.77256 1.21565 1.22371 1.19835 1.19316 0.90703 0.83437 1.42547 0.90287 1.45174 1.01758 1.00110 1.87161 1.20507 0.83840 0.88712 0.98882 1.22811 0.93961 0.97610 1.00592 0.88576 1.22259 0.98822 0.80401 0.97850 1.87720 1.39393 1.19550 1.84825 1.22970 0.83688 0.97020 0.99165 1.21940 1.00115 0.90090 1.03353 1.21510 1.00504 0.98680 0.87583 1.23150 0.70225 0.79872 0.92032 1.90581 1.48397 1.42545 1.61902 1.84945 1.82743 1.31904 1.30477 1.21394 0.93311 0.84400 0.98259 0.94562 0.95578 0.95919 0.86649 0.94340 0.92900 0.86136 0.88821 0.87780 0.72977 0.93767 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.98 10.37 21.65 0.22 -54.76 16 2 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 3 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.23 -12.50 10.30 84.03 0.87 -11.63 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.62 -30.03 2.88 -692.55 -2.00 -32.02 16 10 C 0.21 9.59 4.28 85.86 0.37 9.96 16 11 C -0.13 -4.67 2.27 -10.51 -0.02 -4.69 16 12 H 0.10 3.28 7.99 -2.39 -0.02 3.26 16 13 C 0.08 2.67 6.56 71.44 0.47 3.14 16 14 O -0.40 -12.04 10.63 -148.98 -1.58 -13.62 16 15 C 0.05 1.28 6.50 72.31 0.47 1.75 16 16 C -0.12 -3.09 5.13 30.48 0.16 -2.93 16 17 C -0.08 -2.73 0.75 -52.43 -0.04 -2.77 16 18 C 0.50 18.07 4.93 71.24 0.35 18.42 16 19 O -0.54 -19.68 14.64 21.96 0.32 -19.36 16 20 O -0.49 -18.36 10.65 -51.45 -0.55 -18.90 16 21 C 0.15 5.87 6.34 85.90 0.54 6.41 16 22 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 23 H 0.03 1.36 6.51 -2.39 -0.02 1.34 16 24 H 0.02 1.20 7.28 -2.39 -0.02 1.19 16 25 H 0.12 3.37 8.14 -2.38 -0.02 3.35 16 26 H 0.04 1.31 6.62 -2.39 -0.02 1.29 16 27 H 0.05 1.61 5.61 -2.38 -0.01 1.59 16 28 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 30 H 0.10 2.38 8.03 -2.39 -0.02 2.36 16 31 H 0.41 11.34 9.10 -74.06 -0.67 10.67 16 32 H 0.04 1.71 8.08 -2.38 -0.02 1.69 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -65.71 260.48 2.53 -63.19 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.46 Total: 13.63 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 3.63 Total: 14.80 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -1.77 Total: -86.78 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -1.81 Total: -51.89 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.71 2.53 -63.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715821145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.947 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds