Wall clock time and date at job start Mon Mar 30 2020 03:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00209 * 2 1 4 4 H 1.48498 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46872 * 299.99544 * 3 2 1 6 6 H 1.48497 * 109.47566 * 59.99636 * 3 2 1 7 7 C 1.38811 * 119.99264 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99287 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00680 * 0.02562 * 7 2 1 10 10 C 1.47574 * 125.71296 * 0.02562 * 9 7 2 11 11 C 1.55680 * 104.57519 * 204.70983 * 10 9 7 12 12 H 1.09002 * 112.76930 * 201.71227 * 11 10 9 13 13 C 1.53029 * 107.30794 * 77.36624 * 11 10 9 14 14 O 1.39844 * 112.41363 * 201.78498 * 13 11 10 15 15 C 1.43224 * 113.67176 * 61.42517 * 14 13 11 16 16 C 1.52944 * 108.13082 * 295.82226 * 15 14 13 17 17 C 1.51345 * 110.96131 * 57.20595 * 16 15 14 18 18 C 1.50704 * 109.56235 * 187.91677 * 17 16 15 19 19 O 1.20823 * 119.99455 * 123.90322 * 18 17 16 20 20 O 1.34225 * 120.00139 * 303.91102 * 18 17 16 21 21 C 1.47354 * 125.71755 * 179.97438 * 9 7 2 22 22 H 0.97007 * 119.99910 * 0.02562 * 1 2 3 23 23 H 1.09004 * 110.41474 * 85.93586 * 10 9 7 24 24 H 1.09004 * 110.41780 * 323.48626 * 10 9 7 25 25 H 1.08999 * 109.19647 * 321.02954 * 13 11 10 26 26 H 1.09006 * 109.19411 * 80.29470 * 13 11 10 27 27 H 1.08996 * 109.73139 * 176.16078 * 15 14 13 28 28 H 1.09004 * 109.73063 * 55.47855 * 15 14 13 29 29 H 1.09005 * 109.17846 * 296.82986 * 16 15 14 30 30 H 1.08999 * 109.14397 * 177.56714 * 16 15 14 31 31 H 0.96700 * 117.00258 * 179.97438 * 20 18 17 32 32 H 1.09002 * 110.01334 * 59.89458 * 21 9 7 33 33 H 1.08995 * 110.01841 * 298.50526 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1430 -2.5350 -0.0005 11 6 -0.3970 -3.9356 0.6297 12 1 -1.3706 -4.3476 0.3638 13 6 -0.2167 -3.7936 2.1427 14 8 0.0628 -5.0151 2.7634 15 6 1.2769 -5.6255 2.3111 16 6 1.1132 -5.9704 0.8301 17 6 0.7725 -4.7373 0.0214 18 6 0.4285 -5.1386 -1.3899 19 8 -0.6359 -4.8214 -1.8656 20 8 1.3045 -5.8484 -2.1183 21 6 1.9314 -3.7312 0.0005 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5277 -2.5012 -1.0199 24 1 -0.6036 -1.7556 0.6066 25 1 0.6204 -3.1247 2.3426 26 1 -1.1238 -3.3695 2.5735 27 1 1.4667 -6.5345 2.8819 28 1 2.1073 -4.9308 2.4375 29 1 0.3140 -6.7034 0.7193 30 1 2.0444 -6.3971 0.4574 31 1 1.0391 -6.0827 -3.0181 32 1 2.5531 -3.8600 0.8866 33 1 2.5303 -3.8704 -0.8994 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715821149.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:21 Heat of formation + Delta-G solvation = -128.709318 kcal Electronic energy + Delta-G solvation = -18770.791759 eV Core-core repulsion = 15796.437489 eV Total energy + Delta-G solvation = -2974.354270 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.36861 -40.27349 -37.89781 -37.09567 -35.04517 -33.23445 -31.83926 -28.87865 -27.42941 -26.35905 -24.22337 -23.17263 -22.16029 -20.08413 -19.02906 -18.92978 -18.10983 -17.14570 -16.88244 -16.70661 -16.21031 -15.68560 -15.60508 -15.22885 -14.38095 -14.15358 -13.95513 -13.83378 -13.20566 -13.06478 -12.89555 -12.78062 -12.51441 -12.37373 -12.19601 -11.94540 -11.79730 -11.56598 -11.37024 -11.16035 -10.80314 -10.38006 -8.95711 -7.80209 -5.26470 1.16470 1.46808 1.47527 1.57904 2.01398 2.46608 3.01729 3.27732 3.32115 3.51511 3.74706 3.84480 4.00239 4.14972 4.32052 4.41070 4.56060 4.58393 4.68343 4.80722 4.82884 4.97754 5.06870 5.14584 5.17537 5.42671 5.47266 5.55490 5.73862 6.23262 6.33617 6.96002 7.05005 7.70332 8.34321 9.22186 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.026719 B = 0.009257 C = 0.008152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.691806 B = 3024.057164 C = 3434.122762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.297 1.297 6 H -0.290 1.290 7 C -0.238 4.238 8 H 0.087 0.913 9 N -0.621 5.621 10 C 0.166 3.834 11 C -0.123 4.123 12 H 0.090 0.910 13 C 0.091 3.909 14 O -0.386 6.386 15 C 0.057 3.943 16 C -0.129 4.129 17 C -0.051 4.051 18 C 0.496 3.504 19 O -0.544 6.544 20 O -0.503 6.503 21 C 0.144 3.856 22 H 0.248 0.752 23 H -0.019 1.019 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.135 0.865 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.425 0.575 32 H 0.059 0.941 33 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -13.342 2.242 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.216 1.216 7 C -0.367 4.367 8 H 0.105 0.895 9 N -0.348 5.348 10 C 0.041 3.959 11 C -0.143 4.143 12 H 0.108 0.892 13 C 0.013 3.987 14 O -0.304 6.304 15 C -0.019 4.019 16 C -0.167 4.167 17 C -0.053 4.053 18 C 0.339 3.661 19 O -0.434 6.434 20 O -0.316 6.316 21 C 0.019 3.981 22 H 0.058 0.942 23 H -0.001 1.001 24 H 0.103 0.897 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.153 0.847 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.286 0.714 32 H 0.077 0.923 33 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.558 -13.028 2.635 13.760 hybrid contribution -0.030 1.256 -1.432 1.904 sum 3.528 -11.773 1.203 12.349 Atomic orbital electron populations 1.70035 1.06358 1.25093 1.58367 1.25650 0.96557 1.01074 1.02479 0.84960 0.78224 0.79213 0.76606 1.18773 1.22413 1.21637 1.19498 0.91154 0.83256 1.42761 0.89483 1.44867 1.02178 1.00760 1.86983 1.21851 0.84396 0.93484 0.96194 1.23050 0.97161 0.96942 0.97166 0.89218 1.21753 1.01439 0.85705 0.89796 1.87372 1.43083 1.36469 1.63516 1.22969 0.86392 0.99382 0.93173 1.21721 1.04789 0.94152 0.96002 1.20865 0.98112 0.97680 0.88598 1.23402 0.80871 0.73009 0.88839 1.90679 1.26750 1.53023 1.72903 1.84465 1.48116 1.66742 1.32240 1.21425 0.93053 0.83685 0.99937 0.94244 1.00121 0.89749 0.94402 0.88628 0.84749 0.92509 0.89798 0.87191 0.71388 0.92324 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.87 10.09 21.65 0.22 -56.66 16 2 C -0.07 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.98 45.40 29.55 68.60 2.03 47.42 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 7 C -0.24 -13.12 10.28 84.03 0.86 -12.25 16 8 H 0.09 4.54 7.83 -2.91 -0.02 4.51 16 9 N -0.62 -31.66 2.98 -690.85 -2.06 -33.71 16 10 C 0.17 8.51 4.81 87.10 0.42 8.93 16 11 C -0.12 -4.94 2.92 -9.42 -0.03 -4.96 16 12 H 0.09 3.61 7.57 -2.39 -0.02 3.60 16 13 C 0.09 3.32 5.67 71.99 0.41 3.73 16 14 O -0.39 -12.12 10.68 -139.25 -1.49 -13.60 16 15 C 0.06 1.37 6.69 71.96 0.48 1.85 16 16 C -0.13 -3.20 4.70 30.03 0.14 -3.06 16 17 C -0.05 -1.77 0.60 -52.87 -0.03 -1.80 16 18 C 0.50 17.49 6.49 71.24 0.46 17.96 16 19 O -0.54 -23.08 15.57 21.97 0.34 -22.74 16 20 O -0.50 -13.09 13.13 -51.37 -0.67 -13.77 16 21 C 0.14 5.73 5.78 86.38 0.50 6.23 16 22 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 23 H -0.02 -1.13 7.34 -2.39 -0.02 -1.15 16 24 H 0.08 4.83 5.71 -2.38 -0.01 4.81 16 25 H 0.04 1.57 7.22 -2.39 -0.02 1.55 16 26 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 27 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 1.43 6.66 -2.38 -0.02 1.41 16 29 H 0.08 1.95 8.11 -2.38 -0.02 1.93 16 30 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.42 7.18 9.10 -74.06 -0.67 6.51 16 32 H 0.06 2.14 6.38 -2.39 -0.02 2.13 16 33 H 0.03 1.30 7.69 -2.39 -0.02 1.28 16 Total: -1.00 -70.62 263.09 2.51 -68.11 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.46 Total: 11.51 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 3.68 Total: 13.43 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -1.84 Total: -90.37 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -1.82 Total: -50.11 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -70.62 2.51 -68.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715821149.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.597 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds