Wall clock time and date at job start Mon Mar 30 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37099 * 120.00005 * 2 1 4 4 H 1.08003 * 120.00276 * 147.83386 * 3 2 1 5 5 C 1.38957 * 119.99883 * 328.10104 * 3 2 1 6 6 N 1.31411 * 119.99768 * 159.10516 * 5 3 2 7 7 Si 1.86797 * 119.99908 * 339.10732 * 5 3 2 8 8 H 1.48506 * 109.46807 * 85.50544 * 7 5 3 9 9 H 1.48499 * 109.47005 * 205.50584 * 7 5 3 10 10 H 1.48495 * 109.47388 * 325.50544 * 7 5 3 11 11 C 1.34777 * 120.00326 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00391 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99598 * 0.02562 * 11 2 1 14 14 C 1.53867 * 113.59710 * 279.18724 * 13 11 2 15 15 C 1.53495 * 86.87404 * 220.38453 * 14 13 11 16 16 C 1.52596 * 120.61851 * 149.61547 * 15 14 13 17 17 S 1.81500 * 89.77039 * 93.86508 * 16 15 14 18 18 C 1.52600 * 120.49744 * 260.60068 * 15 14 13 19 19 C 1.53327 * 87.60204 * 25.08769 * 15 14 13 20 20 H 1.09002 * 109.47220 * 95.21458 * 1 2 3 21 21 H 1.09006 * 109.47241 * 215.21835 * 1 2 3 22 22 H 1.09006 * 109.47132 * 335.21963 * 1 2 3 23 23 H 0.97000 * 119.99478 * 180.02562 * 6 5 3 24 24 H 1.09000 * 112.84141 * 50.32645 * 13 11 2 25 25 H 1.08998 * 113.63813 * 334.86240 * 14 13 11 26 26 H 1.09002 * 113.64540 * 105.84342 * 14 13 11 27 27 H 1.08997 * 113.16583 * 209.08807 * 16 15 14 28 28 H 1.09000 * 113.16300 * 338.64433 * 16 15 14 29 29 H 1.09000 * 113.16517 * 21.26806 * 18 15 14 30 30 H 1.09008 * 113.16131 * 150.75567 * 18 15 14 31 31 H 1.09008 * 113.63760 * 220.40609 * 19 15 14 32 32 H 1.08995 * 113.71879 * 89.43869 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1061 1.2591 0.4979 5 6 1.6130 2.2998 -0.6359 6 7 2.0244 3.5049 -0.3111 7 14 0.3058 2.0824 -1.9524 8 1 -1.0312 1.9928 -1.3123 9 1 0.3355 3.2447 -2.8762 10 1 0.5738 0.8369 -2.7152 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4722 0.0005 14 6 0.8819 -2.8928 1.3923 15 6 1.2881 -4.3239 1.0143 16 6 1.7447 -5.3107 2.0850 17 16 0.0468 -5.9375 2.2210 18 6 0.2426 -5.3220 0.5249 19 6 2.2981 -3.7104 0.0374 20 1 -0.3634 -0.0934 -1.0234 21 1 -0.3634 -0.8396 0.5927 22 1 -0.3634 0.9331 0.4308 23 1 1.6490 4.2815 -0.7547 24 1 0.6188 -2.5182 -0.7729 25 1 1.4655 -2.4752 2.2128 26 1 -0.1921 -2.7632 1.5263 27 1 2.4476 -6.0548 1.7105 28 1 2.0962 -4.8240 2.9947 29 1 -0.6566 -4.8446 0.1354 30 1 0.6486 -6.0677 -0.1587 31 1 2.3597 -4.2365 -0.9153 32 1 3.2758 -3.5197 0.4799 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718341709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:49 Heat of formation + Delta-G solvation = 20.426686 kcal Electronic energy + Delta-G solvation = -15596.382852 eV Core-core repulsion = 13071.248475 eV Total energy + Delta-G solvation = -2525.134376 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22878 -37.84753 -34.80429 -32.58639 -31.86643 -26.60911 -26.50013 -25.82347 -25.53948 -22.88531 -18.79257 -18.20583 -17.07619 -16.64111 -16.23174 -15.62530 -15.11537 -15.06426 -14.26262 -13.93011 -13.20030 -13.05836 -12.71028 -12.44349 -12.20439 -12.13197 -12.03129 -11.70127 -11.26101 -11.11800 -10.70819 -10.49651 -10.44837 -10.33592 -9.91565 -9.82120 -9.10228 -8.48441 -7.87896 -7.80232 -6.39210 -3.93832 1.70529 1.84373 3.04078 3.21382 3.24726 3.64534 4.06254 4.15459 4.28198 4.50162 4.73979 4.86071 4.93109 5.12798 5.16660 5.29635 5.38065 5.49221 5.58006 5.72941 5.79425 5.89508 5.98628 6.04162 6.09507 6.26646 6.33569 6.52585 7.53053 8.26075 8.50682 8.95879 9.33483 9.76946 10.73426 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.047130 B = 0.006116 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.962583 B = 4576.764155 C = 4805.701229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.467 5.467 3 C -0.317 4.317 4 H 0.108 0.892 5 C 0.057 3.943 6 N -0.867 5.867 7 Si 0.881 3.119 8 H -0.274 1.274 9 H -0.289 1.289 10 H -0.269 1.269 11 C 0.471 3.529 12 O -0.567 6.567 13 C -0.130 4.130 14 C -0.089 4.089 15 C -0.097 4.097 16 C -0.063 4.063 17 S -0.307 6.307 18 C -0.055 4.055 19 C -0.090 4.090 20 H 0.038 0.962 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.274 0.726 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 -15.062 1.036 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.188 5.188 3 C -0.444 4.444 4 H 0.125 0.875 5 C -0.148 4.148 6 N -0.504 5.504 7 Si 0.709 3.291 8 H -0.200 1.200 9 H -0.216 1.216 10 H -0.194 1.194 11 C 0.260 3.740 12 O -0.449 6.449 13 C -0.152 4.152 14 C -0.126 4.126 15 C -0.098 4.098 16 C -0.211 4.211 17 S -0.080 6.080 18 C -0.203 4.203 19 C -0.131 4.131 20 H 0.056 0.944 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.119 0.881 25 H 0.113 0.887 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.365 -15.463 1.953 16.836 hybrid contribution -0.198 0.509 -1.503 1.599 sum -6.564 -14.954 0.450 16.337 Atomic orbital electron populations 1.22029 0.83401 1.02937 0.99989 1.43699 1.03988 1.05862 1.65295 1.19136 1.06541 0.84328 1.34373 0.87463 1.25310 0.97702 0.94764 0.97038 1.69749 1.43174 0.97747 1.39719 0.87010 0.81430 0.77902 0.82807 1.20031 1.21613 1.19442 1.19915 0.87898 0.84324 0.81899 1.90542 1.13860 1.86853 1.53609 1.22619 0.99431 0.94464 0.98686 1.22705 1.01740 0.91271 0.96920 1.22611 0.96713 0.94336 0.96153 1.24264 0.94770 0.99749 1.02346 1.88887 1.18006 1.84699 1.16445 1.24088 1.01735 0.99287 0.95178 1.22711 0.98026 0.93973 0.98344 0.94379 0.92037 0.90444 0.91596 0.88073 0.88688 0.90298 0.87709 0.88475 0.88499 0.87585 0.90909 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 7.72 59.84 0.46 1.62 16 2 N -0.47 -11.13 2.69 -122.19 -0.33 -11.45 16 3 C -0.32 -8.95 9.46 -14.93 -0.14 -9.09 16 4 H 0.11 3.42 7.80 -52.48 -0.41 3.01 16 5 C 0.06 1.57 5.19 -17.47 -0.09 1.48 16 6 N -0.87 -25.08 13.96 55.50 0.77 -24.31 16 7 Si 0.88 20.42 24.22 -169.99 -4.12 16.31 16 8 H -0.27 -5.82 6.68 56.52 0.38 -5.44 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.27 -6.24 7.03 56.52 0.40 -5.84 16 11 C 0.47 10.53 7.15 -10.99 -0.08 10.45 16 12 O -0.57 -14.87 15.71 5.55 0.09 -14.78 16 13 C -0.13 -2.05 2.86 -90.87 -0.26 -2.31 16 14 C -0.09 -1.18 6.51 -26.02 -0.17 -1.35 16 15 C -0.10 -1.10 0.93 -154.50 -0.14 -1.25 16 16 C -0.06 -0.67 7.69 36.95 0.28 -0.38 16 17 S -0.31 -3.66 24.79 -107.50 -2.66 -6.32 16 18 C -0.05 -0.55 7.69 36.95 0.28 -0.26 16 19 C -0.09 -1.22 7.11 -26.11 -0.19 -1.40 16 20 H 0.04 0.71 5.75 -51.93 -0.30 0.41 16 21 H 0.06 0.95 5.86 -51.93 -0.30 0.64 16 22 H 0.08 1.55 6.61 -51.93 -0.34 1.20 16 23 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.10 1.43 7.93 -51.93 -0.41 1.02 16 25 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 26 H 0.08 0.96 7.63 -51.93 -0.40 0.56 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.11 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.10 1.59 7.44 -51.93 -0.39 1.20 16 LS Contribution 270.63 15.07 4.08 4.08 Total: -1.00 -31.61 270.63 -6.46 -38.07 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.25 Total: 0.90 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.04 Total: -2.49 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.45 Total: -35.76 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.09 Total: -14.78 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.12 Total: 16.31 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -2.66 Total: -6.32 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.61 -6.46 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718341709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.493 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds