Wall clock time and date at job start Mon Mar 30 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37099 * 120.00005 * 2 1 4 4 H 1.08003 * 120.00276 * 147.83386 * 3 2 1 5 5 C 1.38957 * 119.99883 * 328.10104 * 3 2 1 6 6 N 1.31411 * 119.99768 * 159.10516 * 5 3 2 7 7 Si 1.86797 * 119.99908 * 339.10732 * 5 3 2 8 8 H 1.48506 * 109.46807 * 85.50544 * 7 5 3 9 9 H 1.48499 * 109.47005 * 205.50584 * 7 5 3 10 10 H 1.48495 * 109.47388 * 325.50544 * 7 5 3 11 11 C 1.34777 * 120.00326 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00391 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99598 * 0.02562 * 11 2 1 14 14 C 1.53867 * 113.59710 * 279.18724 * 13 11 2 15 15 C 1.53495 * 86.87404 * 220.38453 * 14 13 11 16 16 C 1.52596 * 120.61851 * 149.61547 * 15 14 13 17 17 S 1.81500 * 89.77039 * 93.86508 * 16 15 14 18 18 C 1.52600 * 120.49744 * 260.60068 * 15 14 13 19 19 C 1.53327 * 87.60204 * 25.08769 * 15 14 13 20 20 H 1.09002 * 109.47220 * 95.21458 * 1 2 3 21 21 H 1.09006 * 109.47241 * 215.21835 * 1 2 3 22 22 H 1.09006 * 109.47132 * 335.21963 * 1 2 3 23 23 H 0.97000 * 119.99478 * 180.02562 * 6 5 3 24 24 H 1.09000 * 112.84141 * 50.32645 * 13 11 2 25 25 H 1.08998 * 113.63813 * 334.86240 * 14 13 11 26 26 H 1.09002 * 113.64540 * 105.84342 * 14 13 11 27 27 H 1.08997 * 113.16583 * 209.08807 * 16 15 14 28 28 H 1.09000 * 113.16300 * 338.64433 * 16 15 14 29 29 H 1.09000 * 113.16517 * 21.26806 * 18 15 14 30 30 H 1.09008 * 113.16131 * 150.75567 * 18 15 14 31 31 H 1.09008 * 113.63760 * 220.40609 * 19 15 14 32 32 H 1.08995 * 113.71879 * 89.43869 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1061 1.2591 0.4979 5 6 1.6130 2.2998 -0.6359 6 7 2.0244 3.5049 -0.3111 7 14 0.3058 2.0824 -1.9524 8 1 -1.0312 1.9928 -1.3123 9 1 0.3355 3.2447 -2.8762 10 1 0.5738 0.8369 -2.7152 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4722 0.0005 14 6 0.8819 -2.8928 1.3923 15 6 1.2881 -4.3239 1.0143 16 6 1.7447 -5.3107 2.0850 17 16 0.0468 -5.9375 2.2210 18 6 0.2426 -5.3220 0.5249 19 6 2.2981 -3.7104 0.0374 20 1 -0.3634 -0.0934 -1.0234 21 1 -0.3634 -0.8396 0.5927 22 1 -0.3634 0.9331 0.4308 23 1 1.6490 4.2815 -0.7547 24 1 0.6188 -2.5182 -0.7729 25 1 1.4655 -2.4752 2.2128 26 1 -0.1921 -2.7632 1.5263 27 1 2.4476 -6.0548 1.7105 28 1 2.0962 -4.8240 2.9947 29 1 -0.6566 -4.8446 0.1354 30 1 0.6486 -6.0677 -0.1587 31 1 2.3597 -4.2365 -0.9153 32 1 3.2758 -3.5197 0.4799 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718341709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:49 Heat of formation + Delta-G solvation = -0.829235 kcal Electronic energy + Delta-G solvation = -15597.304577 eV Core-core repulsion = 13071.248475 eV Total energy + Delta-G solvation = -2526.056102 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.51538 -39.38992 -36.69283 -34.19867 -33.39689 -28.32993 -27.45934 -27.29587 -26.71753 -24.44221 -20.35059 -19.31737 -19.04421 -18.00459 -17.39033 -17.30673 -16.33880 -16.10750 -15.82357 -15.48207 -14.59025 -14.56109 -14.00262 -13.97519 -13.66005 -13.51379 -13.20965 -13.08423 -12.57858 -12.40869 -12.29996 -12.16371 -11.82404 -11.47412 -11.35393 -11.06005 -10.78385 -10.26829 -9.75541 -8.76812 -8.50109 -6.10574 0.89997 0.99891 1.23302 1.33943 1.46106 1.93469 2.20134 2.74218 2.99677 3.25107 3.32864 3.63837 3.80966 3.93966 4.15598 4.37118 4.44809 4.45829 4.52625 4.57163 4.68054 4.74378 4.80611 4.84471 4.89777 5.04781 5.19329 5.38932 5.55343 6.03154 6.56270 6.95146 7.34280 7.90388 8.67782 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.047130 B = 0.006116 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.962583 B = 4576.764155 C = 4805.701229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.483 5.483 3 C -0.338 4.338 4 H 0.043 0.957 5 C 0.007 3.993 6 N -0.916 5.916 7 Si 0.955 3.045 8 H -0.232 1.232 9 H -0.292 1.292 10 H -0.263 1.263 11 C 0.465 3.535 12 O -0.620 6.620 13 C -0.127 4.127 14 C -0.087 4.087 15 C -0.081 4.081 16 C -0.057 4.057 17 S -0.348 6.348 18 C -0.037 4.037 19 C -0.088 4.088 20 H 0.057 0.943 21 H 0.104 0.896 22 H 0.068 0.932 23 H 0.279 0.721 24 H 0.133 0.867 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.096 0.904 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 -17.398 -0.409 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.204 5.204 3 C -0.466 4.466 4 H 0.061 0.939 5 C -0.194 4.194 6 N -0.555 5.555 7 Si 0.777 3.223 8 H -0.155 1.155 9 H -0.219 1.219 10 H -0.188 1.188 11 C 0.255 3.745 12 O -0.505 6.505 13 C -0.148 4.148 14 C -0.125 4.125 15 C -0.083 4.083 16 C -0.205 4.205 17 S -0.122 6.122 18 C -0.185 4.185 19 C -0.129 4.129 20 H 0.076 0.924 21 H 0.122 0.878 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.151 0.849 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.142 0.858 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.114 0.886 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.419 -17.819 0.533 20.162 hybrid contribution 0.883 1.238 -0.965 1.801 sum -8.536 -16.581 -0.432 18.654 Atomic orbital electron populations 1.22253 0.80194 1.04432 1.01899 1.43851 1.06004 1.04765 1.65795 1.18746 1.05425 0.87131 1.35285 0.93891 1.26168 1.00782 0.93705 0.98749 1.69878 1.45559 0.98902 1.41119 0.85864 0.79875 0.77725 0.78851 1.15535 1.21870 1.18808 1.21172 0.87757 0.86117 0.79414 1.90509 1.16686 1.87984 1.55300 1.22736 1.00175 0.90725 1.01211 1.22677 1.02629 0.92491 0.94699 1.22397 0.96458 0.93700 0.95735 1.24311 0.94406 0.99742 1.02020 1.89141 1.19103 1.85006 1.18909 1.24143 1.01653 0.98787 0.93917 1.22668 0.96985 0.93254 0.99964 0.92444 0.87796 0.91355 0.91103 0.84907 0.90701 0.88132 0.85832 0.88930 0.86976 0.85267 0.88575 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.93 7.72 127.77 0.99 2.91 16 2 N -0.48 -22.97 2.69 -658.88 -1.77 -24.74 16 3 C -0.34 -19.98 9.46 84.04 0.80 -19.19 16 4 H 0.04 3.00 7.80 -2.91 -0.02 2.98 16 5 C 0.01 0.41 5.19 84.93 0.44 0.85 16 6 N -0.92 -54.97 13.96 21.67 0.30 -54.67 16 7 Si 0.95 41.11 24.22 68.60 1.66 42.77 16 8 H -0.23 -8.44 6.68 99.48 0.66 -7.77 16 9 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.26 -11.04 7.03 99.48 0.70 -10.34 16 11 C 0.46 20.80 7.15 87.66 0.63 21.43 16 12 O -0.62 -33.99 15.71 -3.06 -0.05 -34.04 16 13 C -0.13 -3.65 2.86 -10.96 -0.03 -3.69 16 14 C -0.09 -2.09 6.51 31.05 0.20 -1.89 16 15 C -0.08 -1.57 0.93 -52.17 -0.05 -1.62 16 16 C -0.06 -1.05 7.69 71.85 0.55 -0.50 16 17 S -0.35 -7.26 24.79 -56.49 -1.40 -8.66 16 18 C -0.04 -0.57 7.69 71.85 0.55 -0.02 16 19 C -0.09 -2.16 7.11 31.00 0.22 -1.94 16 20 H 0.06 1.83 5.75 -2.39 -0.01 1.82 16 21 H 0.10 2.74 5.86 -2.38 -0.01 2.73 16 22 H 0.07 2.54 6.61 -2.38 -0.02 2.53 16 23 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 24 H 0.13 3.05 7.93 -2.39 -0.02 3.03 16 25 H 0.07 2.12 8.09 -2.39 -0.02 2.10 16 26 H 0.10 1.99 7.63 -2.39 -0.02 1.97 16 27 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.08 2.36 7.44 -2.39 -0.02 2.35 16 Total: -1.00 -74.62 270.63 4.10 -70.52 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.06 Total: 12.46 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 4.30 Total: -3.64 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -1.47 Total: -79.41 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.05 Total: -34.04 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.66 Total: 42.77 kcal Atomic # 16 Polarization: -7.26 SS G_CDS: -1.40 Total: -8.66 kcal Total: -74.62 4.10 -70.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718341709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.687 kcal (2) G-P(sol) polarization free energy of solvation -74.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds