Wall clock time and date at job start Mon Mar 30 2020 03:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38615 * 119.99868 * 2 1 4 4 N 1.29685 * 124.94984 * 359.97438 * 3 2 1 5 5 C 1.32116 * 116.86673 * 180.02562 * 4 3 2 6 6 C 1.33332 * 114.57851 * 0.02562 * 5 4 3 7 7 C 1.50701 * 125.94972 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46921 * 89.99687 * 7 6 5 9 9 C 1.46901 * 110.99975 * 66.04817 * 8 7 6 10 10 C 1.46903 * 110.99790 * 189.99765 * 8 7 6 11 11 C 1.50702 * 109.46939 * 170.00172 * 10 8 7 12 12 H 1.07998 * 119.99887 * 0.02562 * 11 10 8 13 13 C 1.37875 * 119.99667 * 179.97438 * 11 10 8 14 14 N 1.31520 * 120.00476 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99670 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46954 * 90.00753 * 15 13 11 17 17 H 1.48499 * 109.47115 * 210.00078 * 15 13 11 18 18 H 1.48496 * 109.47460 * 330.00419 * 15 13 11 19 19 S 1.70965 * 124.94851 * 180.33366 * 3 2 1 20 20 H 1.08996 * 109.46995 * 299.99861 * 1 2 3 21 21 H 1.08997 * 109.47406 * 59.99817 * 1 2 3 22 22 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 23 23 H 0.97003 * 119.99951 * 180.02562 * 2 1 3 24 24 H 1.08004 * 122.71191 * 180.02562 * 5 4 3 25 25 H 1.09002 * 109.47060 * 209.99868 * 7 6 5 26 26 H 1.09001 * 109.47380 * 329.99955 * 7 6 5 27 27 H 1.09001 * 109.47121 * 59.99638 * 9 8 7 28 28 H 1.09005 * 109.47342 * 179.97438 * 9 8 7 29 29 H 1.08999 * 109.46894 * 299.99652 * 9 8 7 30 30 H 1.09003 * 109.47188 * 290.00257 * 10 8 7 31 31 H 1.08993 * 109.47221 * 50.00180 * 10 8 7 32 32 H 0.96995 * 119.99798 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1580 1.2005 0.0000 4 7 1.6089 2.3753 -0.0005 5 6 2.4238 3.4152 -0.0009 6 6 3.7202 3.1039 -0.0014 7 6 4.8654 4.0836 -0.0025 8 7 5.2380 4.4027 1.3822 9 6 5.7876 3.2236 2.0646 10 6 6.1842 5.5255 1.4272 11 6 6.3534 5.9829 2.8532 12 1 5.8126 5.4887 3.6466 13 6 7.1996 7.0317 3.1448 14 7 7.8587 7.6333 2.1787 15 14 7.4088 7.5991 4.9123 16 1 8.5240 6.8492 5.5442 17 1 7.7152 9.0520 4.9327 18 1 6.1537 7.3473 5.6649 19 16 3.8613 1.3480 -0.0082 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.9500 -0.8401 -0.0004 24 1 2.0685 4.4352 -0.0009 25 1 5.7198 3.6432 -0.5164 26 1 4.5627 4.9958 -0.5167 27 1 6.6750 2.8778 1.5346 28 1 6.0556 3.4878 3.0876 29 1 5.0401 2.4303 2.0778 30 1 7.1480 5.2046 1.0318 31 1 5.8002 6.3486 0.8248 32 1 8.4536 8.3713 2.3840 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719362819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:47 Heat of formation + Delta-G solvation = 56.251787 kcal Electronic energy + Delta-G solvation = -14742.937836 eV Core-core repulsion = 12251.649704 eV Total energy + Delta-G solvation = -2491.288132 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.43694 -36.77482 -35.48901 -32.61499 -30.30979 -27.49518 -27.00323 -25.82273 -24.08903 -22.69311 -20.49529 -19.22019 -18.60733 -16.36105 -16.20663 -15.25940 -15.03380 -14.69117 -14.24124 -14.20016 -13.85690 -13.24194 -13.09424 -12.42275 -12.13829 -11.94371 -11.67850 -11.22397 -10.89714 -10.80413 -10.63143 -10.46709 -10.12621 -9.84226 -9.41184 -9.19382 -8.89923 -8.42472 -7.57709 -7.22812 -6.01529 -4.02654 1.23187 1.30340 2.01458 3.21890 3.26048 3.33226 3.39416 3.44493 4.44726 4.89332 5.00905 5.15574 5.34292 5.38368 5.43282 5.63993 5.68207 6.09533 6.18703 6.23081 6.31179 6.40289 6.77134 6.89715 7.05957 7.27271 7.33421 7.80765 8.07563 8.16579 8.20246 8.54629 9.04945 9.61482 11.09346 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.050799 B = 0.004714 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.062706 B = 5937.709514 C = 6032.852342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.708 5.708 3 C 0.300 3.700 4 N -0.544 5.544 5 C 0.083 3.917 6 C -0.220 4.220 7 C 0.134 3.866 8 N -0.535 5.535 9 C 0.034 3.966 10 C 0.192 3.808 11 C -0.506 4.506 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 S 0.077 5.923 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.412 0.588 24 H 0.175 0.825 25 H 0.032 0.968 26 H 0.089 0.911 27 H 0.010 0.990 28 H 0.075 0.925 29 H 0.047 0.953 30 H -0.008 1.008 31 H 0.032 0.968 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.306 -15.066 -5.796 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.349 5.349 3 C -0.071 4.071 4 N -0.270 5.270 5 C -0.066 4.066 6 C -0.343 4.343 7 C 0.003 3.997 8 N -0.259 5.259 9 C -0.114 4.114 10 C 0.067 3.933 11 C -0.545 4.545 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.726 3.274 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.197 1.197 19 S 0.326 5.674 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.247 0.753 24 H 0.192 0.808 25 H 0.050 0.950 26 H 0.108 0.892 27 H 0.028 0.972 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.010 0.990 31 H 0.050 0.950 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.554 -15.384 -5.590 19.475 hybrid contribution 0.770 0.651 0.548 1.148 sum -9.784 -14.732 -5.042 18.390 Atomic orbital electron populations 1.21476 0.78620 1.01570 1.02217 1.43569 1.06198 1.02772 1.82322 1.23525 0.93086 0.90464 1.00056 1.66391 1.38073 0.96557 1.25937 1.21274 0.87683 0.97857 0.99823 1.25408 0.99544 0.93697 1.15663 1.20369 0.91872 0.95059 0.92393 1.62170 1.45046 1.07187 1.11511 1.22296 0.96243 0.92409 1.00500 1.19764 0.88244 0.87254 0.98001 1.21155 1.24806 1.15762 0.92738 0.91833 1.24982 0.95741 0.96427 0.97442 1.69958 1.28770 1.23472 1.31710 0.86499 0.78441 0.77746 0.84754 1.20770 1.21247 1.19749 1.83885 1.03199 1.05913 1.74384 0.92481 0.92580 0.90976 0.75256 0.80819 0.94954 0.89249 0.97165 0.90620 0.93439 0.99032 0.95017 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.90 10.98 59.85 0.66 1.56 16 2 N -0.71 -7.21 5.87 -69.11 -0.41 -7.62 16 3 C 0.30 4.18 8.09 -87.68 -0.71 3.47 16 4 N -0.54 -8.74 10.14 -15.21 -0.15 -8.89 16 5 C 0.08 1.35 11.24 -19.14 -0.22 1.14 16 6 C -0.22 -3.65 5.28 -36.02 -0.19 -3.84 16 7 C 0.13 2.46 5.49 -4.97 -0.03 2.44 16 8 N -0.53 -11.78 4.74 -245.82 -1.17 -12.95 16 9 C 0.03 0.70 9.13 60.07 0.55 1.25 16 10 C 0.19 5.02 4.72 -4.97 -0.02 5.00 16 11 C -0.51 -14.32 8.46 -34.44 -0.29 -14.61 16 12 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 15 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 S 0.08 1.08 21.87 -107.50 -2.35 -1.27 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.41 3.04 8.95 -40.82 -0.37 2.68 16 24 H 0.17 2.64 8.06 -52.48 -0.42 2.21 16 25 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 26 H 0.09 1.59 7.93 -51.93 -0.41 1.18 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 29 H 0.05 0.87 6.13 -51.93 -0.32 0.55 16 30 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 31 H 0.03 0.87 7.93 -51.93 -0.41 0.46 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 285.64 15.07 4.30 4.30 Total: -1.00 -31.79 285.64 -8.73 -40.53 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -4.32 Total: -2.70 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.35 Total: -2.12 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.99 Total: -55.49 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.35 Total: -1.27 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.79 -8.73 -40.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719362819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.777 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds