Wall clock time and date at job start Mon Mar 30 2020 03:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38615 * 119.99868 * 2 1 4 4 N 1.29685 * 124.94984 * 359.97438 * 3 2 1 5 5 C 1.32116 * 116.86673 * 180.02562 * 4 3 2 6 6 C 1.33332 * 114.57851 * 0.02562 * 5 4 3 7 7 C 1.50701 * 125.94972 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46921 * 89.99687 * 7 6 5 9 9 C 1.46901 * 110.99975 * 66.04817 * 8 7 6 10 10 C 1.46903 * 110.99790 * 189.99765 * 8 7 6 11 11 C 1.50702 * 109.46939 * 170.00172 * 10 8 7 12 12 H 1.07998 * 119.99887 * 0.02562 * 11 10 8 13 13 C 1.37875 * 119.99667 * 179.97438 * 11 10 8 14 14 N 1.31520 * 120.00476 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99670 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46954 * 90.00753 * 15 13 11 17 17 H 1.48499 * 109.47115 * 210.00078 * 15 13 11 18 18 H 1.48496 * 109.47460 * 330.00419 * 15 13 11 19 19 S 1.70965 * 124.94851 * 180.33366 * 3 2 1 20 20 H 1.08996 * 109.46995 * 299.99861 * 1 2 3 21 21 H 1.08997 * 109.47406 * 59.99817 * 1 2 3 22 22 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 23 23 H 0.97003 * 119.99951 * 180.02562 * 2 1 3 24 24 H 1.08004 * 122.71191 * 180.02562 * 5 4 3 25 25 H 1.09002 * 109.47060 * 209.99868 * 7 6 5 26 26 H 1.09001 * 109.47380 * 329.99955 * 7 6 5 27 27 H 1.09001 * 109.47121 * 59.99638 * 9 8 7 28 28 H 1.09005 * 109.47342 * 179.97438 * 9 8 7 29 29 H 1.08999 * 109.46894 * 299.99652 * 9 8 7 30 30 H 1.09003 * 109.47188 * 290.00257 * 10 8 7 31 31 H 1.08993 * 109.47221 * 50.00180 * 10 8 7 32 32 H 0.96995 * 119.99798 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1580 1.2005 0.0000 4 7 1.6089 2.3753 -0.0005 5 6 2.4238 3.4152 -0.0009 6 6 3.7202 3.1039 -0.0014 7 6 4.8654 4.0836 -0.0025 8 7 5.2380 4.4027 1.3822 9 6 5.7876 3.2236 2.0646 10 6 6.1842 5.5255 1.4272 11 6 6.3534 5.9829 2.8532 12 1 5.8126 5.4887 3.6466 13 6 7.1996 7.0317 3.1448 14 7 7.8587 7.6333 2.1787 15 14 7.4088 7.5991 4.9123 16 1 8.5240 6.8492 5.5442 17 1 7.7152 9.0520 4.9327 18 1 6.1537 7.3473 5.6649 19 16 3.8613 1.3480 -0.0082 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.9500 -0.8401 -0.0004 24 1 2.0685 4.4352 -0.0009 25 1 5.7198 3.6432 -0.5164 26 1 4.5627 4.9958 -0.5167 27 1 6.6750 2.8778 1.5346 28 1 6.0556 3.4878 3.0876 29 1 5.0401 2.4303 2.0778 30 1 7.1480 5.2046 1.0318 31 1 5.8002 6.3486 0.8248 32 1 8.4536 8.3713 2.3840 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719362819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:47 Heat of formation + Delta-G solvation = 33.621886 kcal Electronic energy + Delta-G solvation = -14743.919142 eV Core-core repulsion = 12251.649704 eV Total energy + Delta-G solvation = -2492.269438 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60706 -38.39015 -36.55998 -34.70909 -31.74626 -29.14396 -28.34022 -27.24442 -25.62038 -24.11577 -22.26960 -20.33386 -19.75777 -18.47308 -17.34769 -16.86457 -16.32653 -16.04852 -15.72761 -15.58827 -15.41378 -14.77810 -14.11032 -13.94943 -13.64190 -13.32676 -13.04342 -12.92977 -12.73303 -12.61512 -12.30126 -12.12588 -11.80356 -11.36351 -11.10836 -10.60981 -10.53896 -10.05831 -9.03946 -8.62918 -8.18846 -6.28938 0.05704 0.18715 0.82788 1.42251 1.43636 1.55432 2.03654 2.33596 2.42189 3.13487 3.46209 3.81277 4.04912 4.26781 4.45730 4.51950 4.62384 4.68687 4.73415 4.96700 4.97501 5.06139 5.14315 5.18732 5.29071 5.65587 5.88251 6.04752 6.25728 6.30516 6.59681 6.86455 7.08542 7.40537 8.91841 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.050799 B = 0.004714 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.062706 B = 5937.709514 C = 6032.852342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.692 5.692 3 C 0.303 3.697 4 N -0.572 5.572 5 C 0.087 3.913 6 C -0.253 4.253 7 C 0.140 3.860 8 N -0.544 5.544 9 C 0.041 3.959 10 C 0.207 3.793 11 C -0.524 4.524 12 H 0.061 0.939 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.267 1.267 19 S 0.111 5.889 20 H 0.045 0.955 21 H 0.049 0.951 22 H 0.112 0.888 23 H 0.427 0.573 24 H 0.176 0.824 25 H 0.035 0.965 26 H 0.087 0.913 27 H 0.013 0.987 28 H 0.058 0.942 29 H 0.070 0.930 30 H -0.034 1.034 31 H 0.010 0.990 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.256 -16.829 -5.111 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.334 5.334 3 C -0.068 4.068 4 N -0.298 5.298 5 C -0.063 4.063 6 C -0.376 4.376 7 C 0.010 3.990 8 N -0.268 5.268 9 C -0.108 4.108 10 C 0.081 3.919 11 C -0.562 4.562 12 H 0.079 0.921 13 C -0.195 4.195 14 N -0.574 5.574 15 Si 0.793 3.207 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.191 1.191 19 S 0.360 5.640 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.131 0.869 23 H 0.266 0.734 24 H 0.193 0.807 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.088 0.912 30 H -0.016 1.016 31 H 0.028 0.972 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.522 -17.216 -4.913 21.291 hybrid contribution 0.960 1.061 0.266 1.455 sum -10.562 -16.155 -4.647 19.853 Atomic orbital electron populations 1.21658 0.77224 1.04005 1.01308 1.43824 1.07153 1.02169 1.80228 1.23867 0.93541 0.91139 0.98290 1.66441 1.38277 0.97078 1.28028 1.21397 0.87803 0.98393 0.98714 1.25133 0.98809 0.95228 1.18428 1.20253 0.92707 0.95867 0.90215 1.62078 1.43577 1.06994 1.14145 1.22237 0.97017 0.92230 0.99285 1.19419 0.87738 0.88136 0.96626 1.21449 1.25011 1.16144 0.93589 0.92089 1.25878 0.95230 0.96399 1.01958 1.70078 1.29362 1.23979 1.34003 0.85397 0.78681 0.77364 0.79263 1.19777 1.20659 1.19109 1.83656 1.02794 1.03315 1.74261 0.93595 0.93246 0.86922 0.73439 0.80670 0.94727 0.89474 0.96895 0.92293 0.91180 1.01621 0.97187 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.44 10.98 127.77 1.40 2.84 16 2 N -0.69 -12.04 5.87 -372.55 -2.19 -14.23 16 3 C 0.30 7.82 8.09 179.32 1.45 9.27 16 4 N -0.57 -17.63 10.14 -202.02 -2.05 -19.68 16 5 C 0.09 2.80 11.24 83.54 0.94 3.74 16 6 C -0.25 -8.23 5.28 24.58 0.13 -8.10 16 7 C 0.14 5.20 5.49 85.56 0.47 5.67 16 8 N -0.54 -24.29 4.74 -931.63 -4.42 -28.71 16 9 C 0.04 1.66 9.13 127.69 1.17 2.82 16 10 C 0.21 11.16 4.72 85.56 0.40 11.56 16 11 C -0.52 -30.09 8.46 25.60 0.22 -29.87 16 12 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 15 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 S 0.11 2.88 21.87 -56.49 -1.24 1.65 16 20 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 21 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.43 4.78 8.95 -92.71 -0.83 3.95 16 24 H 0.18 5.36 8.06 -2.91 -0.02 5.33 16 25 H 0.03 1.26 8.12 -2.39 -0.02 1.24 16 26 H 0.09 3.20 7.93 -2.39 -0.02 3.18 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 2.55 6.76 -2.38 -0.02 2.54 16 29 H 0.07 2.49 6.13 -2.39 -0.01 2.47 16 30 H -0.03 -1.96 8.12 -2.39 -0.02 -1.98 16 31 H 0.01 0.58 7.93 -2.39 -0.02 0.56 16 32 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -68.08 285.64 -0.65 -68.73 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 0.29 Total: 3.06 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 6.64 Total: -1.41 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -8.37 Total: -118.72 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.24 Total: 1.65 kcal Total: -68.08 -0.65 -68.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719362819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.352 kcal (2) G-P(sol) polarization free energy of solvation -68.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds