Wall clock time and date at job start Mon Mar 30 2020 03:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86807 * 119.99898 * 2 1 4 4 H 1.48496 * 109.47276 * 269.99927 * 3 2 1 5 5 H 1.48495 * 109.46983 * 30.00433 * 3 2 1 6 6 H 1.48503 * 109.46814 * 150.00316 * 3 2 1 7 7 C 1.40051 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00313 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99585 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99946 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99873 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00218 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47517 * 180.02562 * 12 11 9 14 14 H 1.08993 * 110.03521 * 306.36898 * 13 12 11 15 15 C 1.55744 * 110.01525 * 184.99968 * 13 12 11 16 16 C 1.52432 * 102.82756 * 246.27191 * 15 13 12 17 17 H 1.08993 * 113.25239 * 89.90633 * 16 15 13 18 18 C 1.52569 * 119.69515 * 226.72025 * 16 15 13 19 19 O 1.45619 * 103.52146 * 146.12343 * 18 16 15 20 20 C 1.45539 * 109.07274 * 333.92459 * 19 18 16 21 21 C 1.48214 * 105.37012 * 356.01337 * 20 19 18 22 22 H 1.09002 * 105.00807 * 286.98232 * 21 20 19 23 23 O 1.37431 * 135.68170 * 155.72706 * 21 20 19 24 24 H 0.97004 * 119.99991 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99847 * 0.02562 * 11 9 7 26 26 H 1.09003 * 109.46905 * 59.99852 * 12 11 9 27 27 H 1.09007 * 109.47305 * 300.00706 * 12 11 9 28 28 H 1.09001 * 110.73758 * 127.93843 * 15 13 12 29 29 H 1.08999 * 110.89313 * 4.67804 * 15 13 12 30 30 H 1.09004 * 110.61297 * 264.63529 * 18 16 15 31 31 H 1.09004 * 110.61456 * 27.46224 * 18 16 15 32 32 H 1.09004 * 110.26126 * 237.04394 * 20 19 18 33 33 H 1.08993 * 110.26959 * 114.99792 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4381 2.6526 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0581 -2.4804 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2165 -4.9164 0.0000 13 6 2.2107 -6.0793 0.0005 14 1 2.9148 -5.9690 -0.8240 15 6 1.4490 -7.4318 -0.1264 16 6 1.7135 -8.0968 1.2195 17 1 0.9650 -7.8543 1.9738 18 6 2.1469 -9.5588 1.2680 19 8 3.0441 -9.6102 2.4138 20 6 3.6274 -8.2929 2.6205 21 6 3.1283 -7.4619 1.4992 22 1 3.6752 -7.8116 0.6236 23 8 2.9291 -6.1194 1.2830 24 1 -0.4850 0.8401 0.0004 25 1 2.9189 -3.6476 -0.0002 26 1 0.5895 -4.9743 -0.8897 27 1 0.5900 -4.9739 0.8902 28 1 1.8586 -8.0306 -0.9399 29 1 0.3816 -7.2648 -0.2713 30 1 1.2864 -10.2092 1.4249 31 1 2.6726 -9.8338 0.3535 32 1 4.7153 -8.3528 2.5909 33 1 3.2973 -7.8790 3.5733 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724554019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:54 Heat of formation + Delta-G solvation = -98.155373 kcal Electronic energy + Delta-G solvation = -17318.551309 eV Core-core repulsion = 14345.521958 eV Total energy + Delta-G solvation = -2973.029351 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.32685 -37.94634 -36.99299 -33.57950 -32.65304 -32.23617 -30.14916 -28.77492 -26.66366 -24.87771 -22.04542 -21.67805 -20.83305 -19.69458 -17.61673 -17.04561 -16.38702 -16.02715 -15.40368 -15.25727 -14.93505 -14.31020 -13.99734 -13.55276 -13.32464 -13.12558 -12.71235 -12.40382 -11.96688 -11.83548 -11.46146 -11.33272 -10.98126 -10.93032 -10.76477 -10.49546 -10.41478 -10.19620 -9.99771 -9.45281 -8.83482 -7.61111 -7.49676 -6.16854 -4.61809 2.96663 3.15768 3.22469 3.26379 3.52601 4.06911 4.12715 4.46017 4.53234 4.60908 4.70970 4.90257 4.97928 5.14143 5.16579 5.23169 5.42010 5.46576 5.50424 5.56974 5.61288 5.82661 5.83987 5.94691 6.31509 6.37667 6.46885 6.89703 7.45611 7.95199 8.09771 8.35012 9.04584 9.55092 10.61766 10.80123 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.055368 B = 0.004578 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.582401 B = 6115.340625 C = 6409.441644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.583 6.583 11 N -0.765 5.765 12 C 0.137 3.863 13 C 0.068 3.932 14 H 0.085 0.915 15 C -0.130 4.130 16 C -0.186 4.186 17 H 0.105 0.895 18 C 0.062 3.938 19 O -0.380 6.380 20 C 0.083 3.917 21 C 0.035 3.965 22 H 0.032 0.968 23 O -0.324 6.324 24 H 0.268 0.732 25 H 0.383 0.617 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -15.731 0.628 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.466 6.466 11 N -0.421 5.421 12 C 0.012 3.988 13 C 0.012 3.988 14 H 0.103 0.897 15 C -0.168 4.168 16 C -0.205 4.205 17 H 0.123 0.877 18 C -0.014 4.014 19 O -0.300 6.300 20 C 0.007 3.993 21 C -0.026 4.026 22 H 0.050 0.950 23 O -0.243 6.243 24 H 0.079 0.921 25 H 0.214 0.786 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.246 -15.633 0.857 16.512 hybrid contribution 0.808 0.833 -0.315 1.203 sum 6.054 -14.799 0.542 15.999 Atomic orbital electron populations 1.70023 1.07074 1.27222 1.35477 1.25709 0.94611 1.00287 0.92600 0.86369 0.80184 0.81381 0.78791 1.19760 1.20463 1.18894 1.20888 0.93616 0.89372 1.54285 0.91405 1.18225 0.87184 0.82444 0.76286 1.90593 1.14104 1.86886 1.55051 1.46071 1.08709 1.04535 1.82741 1.21038 0.93071 0.83225 1.01509 1.24332 0.93705 0.95682 0.85120 0.89671 1.22471 1.02622 0.95398 0.96335 1.24116 1.00475 0.96170 0.99721 0.87663 1.22862 0.93396 0.95544 0.89580 1.89331 1.61991 1.28928 1.49713 1.21589 0.98114 0.82252 0.97339 1.21851 0.95836 0.85507 0.99358 0.95008 1.88342 1.76169 1.19674 1.40082 0.92140 0.78551 0.91670 0.92464 0.90077 0.89130 0.88982 0.91439 0.89356 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.36 11.83 55.55 0.66 -22.71 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.37 29.56 -169.99 -5.02 15.35 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -15.68 9.54 -35.63 -0.34 -16.02 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.55 16.12 7.75 -12.99 -0.10 16.02 16 10 O -0.58 -19.17 15.02 5.20 0.08 -19.10 16 11 N -0.76 -17.56 5.54 -61.72 -0.34 -17.91 16 12 C 0.14 2.61 5.19 -4.05 -0.02 2.59 16 13 C 0.07 0.98 3.30 -25.27 -0.08 0.89 16 14 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.13 -1.43 6.14 -25.56 -0.16 -1.59 16 16 C -0.19 -2.07 3.92 -88.63 -0.35 -2.42 16 17 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 18 C 0.06 0.59 7.28 36.94 0.27 0.86 16 19 O -0.38 -4.43 11.58 -35.23 -0.41 -4.84 16 20 C 0.08 0.91 7.61 34.83 0.27 1.18 16 21 C 0.04 0.44 3.94 -26.56 -0.10 0.34 16 22 H 0.03 0.37 6.92 -51.93 -0.36 0.02 16 23 O -0.32 -5.12 11.22 -24.50 -0.27 -5.40 16 24 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 25 H 0.38 7.93 8.45 -40.82 -0.35 7.59 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 28 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 29 H 0.09 0.97 7.76 -51.93 -0.40 0.57 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.56 8.02 -51.93 -0.42 0.15 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 278.54 15.07 4.20 4.20 Total: -1.00 -35.22 278.54 -6.28 -41.50 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.45 Total: 4.67 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.72 Total: 4.23 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.31 Total: -40.61 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.60 Total: -29.33 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -35.22 -6.28 -41.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724554019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.659 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds