Wall clock time and date at job start Mon Mar 30 2020 03:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86807 * 119.99898 * 2 1 4 4 H 1.48496 * 109.47276 * 269.99927 * 3 2 1 5 5 H 1.48495 * 109.46983 * 30.00433 * 3 2 1 6 6 H 1.48503 * 109.46814 * 150.00316 * 3 2 1 7 7 C 1.40051 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00313 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99585 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99946 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99873 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00218 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47517 * 180.02562 * 12 11 9 14 14 H 1.08993 * 110.03521 * 306.36898 * 13 12 11 15 15 C 1.55744 * 110.01525 * 184.99968 * 13 12 11 16 16 C 1.52432 * 102.82756 * 246.27191 * 15 13 12 17 17 H 1.08993 * 113.25239 * 89.90633 * 16 15 13 18 18 C 1.52569 * 119.69515 * 226.72025 * 16 15 13 19 19 O 1.45619 * 103.52146 * 146.12343 * 18 16 15 20 20 C 1.45539 * 109.07274 * 333.92459 * 19 18 16 21 21 C 1.48214 * 105.37012 * 356.01337 * 20 19 18 22 22 H 1.09002 * 105.00807 * 286.98232 * 21 20 19 23 23 O 1.37431 * 135.68170 * 155.72706 * 21 20 19 24 24 H 0.97004 * 119.99991 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99847 * 0.02562 * 11 9 7 26 26 H 1.09003 * 109.46905 * 59.99852 * 12 11 9 27 27 H 1.09007 * 109.47305 * 300.00706 * 12 11 9 28 28 H 1.09001 * 110.73758 * 127.93843 * 15 13 12 29 29 H 1.08999 * 110.89313 * 4.67804 * 15 13 12 30 30 H 1.09004 * 110.61297 * 264.63529 * 18 16 15 31 31 H 1.09004 * 110.61456 * 27.46224 * 18 16 15 32 32 H 1.09004 * 110.26126 * 237.04394 * 20 19 18 33 33 H 1.08993 * 110.26959 * 114.99792 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4381 2.6526 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0581 -2.4804 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2165 -4.9164 0.0000 13 6 2.2107 -6.0793 0.0005 14 1 2.9148 -5.9690 -0.8240 15 6 1.4490 -7.4318 -0.1264 16 6 1.7135 -8.0968 1.2195 17 1 0.9650 -7.8543 1.9738 18 6 2.1469 -9.5588 1.2680 19 8 3.0441 -9.6102 2.4138 20 6 3.6274 -8.2929 2.6205 21 6 3.1283 -7.4619 1.4992 22 1 3.6752 -7.8116 0.6236 23 8 2.9291 -6.1194 1.2830 24 1 -0.4850 0.8401 0.0004 25 1 2.9189 -3.6476 -0.0002 26 1 0.5895 -4.9743 -0.8897 27 1 0.5900 -4.9739 0.8902 28 1 1.8586 -8.0306 -0.9399 29 1 0.3816 -7.2648 -0.2713 30 1 1.2864 -10.2092 1.4249 31 1 2.6726 -9.8338 0.3535 32 1 4.7153 -8.3528 2.5909 33 1 3.2973 -7.8790 3.5733 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724554019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:54 Heat of formation + Delta-G solvation = -126.310786 kcal Electronic energy + Delta-G solvation = -17319.772219 eV Core-core repulsion = 14345.521958 eV Total energy + Delta-G solvation = -2974.250261 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.30541 -39.47608 -38.57692 -35.39182 -34.48536 -33.63974 -31.42929 -29.83530 -28.49388 -26.35172 -23.21224 -22.62946 -21.88388 -21.70341 -19.29181 -18.39600 -17.47884 -17.37884 -17.05388 -16.42873 -16.19353 -15.88652 -15.50730 -15.01995 -14.63726 -14.38411 -14.15611 -13.56543 -13.35941 -13.16690 -13.12211 -12.81510 -12.71746 -12.63041 -12.12035 -11.99572 -11.75455 -11.49083 -10.93959 -10.87521 -10.43534 -9.90372 -9.52103 -8.30495 -6.87186 1.40102 1.41897 1.57391 1.96714 2.24835 2.45730 2.72634 3.01305 3.20737 3.58849 3.59668 3.65341 3.81694 4.05293 4.12197 4.15653 4.23170 4.35397 4.61013 4.67621 4.71934 4.76898 4.77762 4.92959 4.99507 5.09297 5.30861 5.55867 5.85425 5.86621 6.19572 6.24516 6.85407 7.50948 8.46471 8.65651 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.055368 B = 0.004578 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.582401 B = 6115.340625 C = 6409.441644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.536 3.464 10 O -0.634 6.634 11 N -0.754 5.754 12 C 0.137 3.863 13 C 0.075 3.925 14 H 0.104 0.896 15 C -0.121 4.121 16 C -0.182 4.182 17 H 0.089 0.911 18 C 0.065 3.935 19 O -0.394 6.394 20 C 0.084 3.916 21 C 0.020 3.980 22 H 0.047 0.953 23 O -0.354 6.354 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.063 0.937 27 H 0.031 0.969 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.132 -16.305 0.044 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.611 4.611 8 H 0.105 0.895 9 C 0.340 3.660 10 O -0.521 6.521 11 N -0.408 5.408 12 C 0.012 3.988 13 C 0.019 3.981 14 H 0.122 0.878 15 C -0.159 4.159 16 C -0.201 4.201 17 H 0.107 0.893 18 C -0.011 4.011 19 O -0.315 6.315 20 C 0.008 3.992 21 C -0.040 4.040 22 H 0.065 0.935 23 O -0.273 6.273 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.193 -16.266 0.272 17.788 hybrid contribution 0.197 0.937 -0.110 0.964 sum 7.390 -15.329 0.162 17.018 Atomic orbital electron populations 1.70186 1.09571 1.29008 1.36416 1.26998 0.95546 1.05006 0.91115 0.84989 0.78678 0.74894 0.79526 1.18353 1.19725 1.17371 1.21442 0.94738 0.90145 1.54778 0.89535 1.18635 0.86852 0.84409 0.76083 1.90544 1.16148 1.88020 1.57425 1.45767 1.09319 1.04634 1.81079 1.21156 0.94078 0.83428 1.00154 1.24284 0.93274 0.95156 0.85402 0.87819 1.22467 1.02424 0.93627 0.97391 1.24081 0.99309 0.97442 0.99288 0.89258 1.23021 0.93872 0.94369 0.89821 1.89315 1.62429 1.29024 1.50698 1.21665 0.99118 0.81766 0.96629 1.22071 0.97036 0.84112 1.00764 0.93526 1.88286 1.76411 1.21958 1.40665 0.91504 0.77135 0.91889 0.95044 0.86753 0.89129 0.87419 0.89394 0.87537 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.13 11.83 21.84 0.26 -50.87 16 2 C 0.03 1.61 5.50 85.31 0.47 2.08 16 3 Si 1.00 41.46 29.56 68.60 2.03 43.49 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 7 C -0.57 -33.39 9.54 24.83 0.24 -33.15 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.54 32.05 7.75 86.36 0.67 32.72 16 10 O -0.63 -43.45 15.02 -4.32 -0.06 -43.52 16 11 N -0.75 -35.19 5.54 -467.41 -2.59 -37.78 16 12 C 0.14 5.32 5.19 86.38 0.45 5.77 16 13 C 0.08 2.07 3.30 31.54 0.10 2.17 16 14 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 15 C -0.12 -2.40 6.14 31.35 0.19 -2.21 16 16 C -0.18 -3.75 3.92 -9.51 -0.04 -3.79 16 17 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 18 C 0.06 1.05 7.28 71.84 0.52 1.57 16 19 O -0.39 -8.36 11.58 -148.98 -1.72 -10.08 16 20 C 0.08 1.71 7.61 70.47 0.54 2.25 16 21 C 0.02 0.47 3.94 30.71 0.12 0.60 16 22 H 0.05 0.96 6.92 -2.39 -0.02 0.94 16 23 O -0.35 -10.93 11.22 -110.58 -1.24 -12.17 16 24 H 0.28 15.42 8.29 -92.71 -0.77 14.65 16 25 H 0.40 16.33 8.45 -92.71 -0.78 15.55 16 26 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.03 1.37 8.14 -2.38 -0.02 1.36 16 28 H 0.11 1.56 8.04 -2.39 -0.02 1.54 16 29 H 0.09 1.82 7.76 -2.39 -0.02 1.80 16 30 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.09 1.11 8.02 -2.38 -0.02 1.09 16 32 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -78.69 278.54 0.26 -78.43 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.34 Total: 24.50 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 3.26 Total: 8.00 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -2.33 Total: -88.65 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -3.03 Total: -65.77 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -78.69 0.26 -78.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724554019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.881 kcal (2) G-P(sol) polarization free energy of solvation -78.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds