Wall clock time and date at job start Mon Mar 30 2020 03:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48510 * 109.46918 * 239.99811 * 3 2 1 5 5 H 1.48497 * 109.47531 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47039 * 120.00351 * 3 2 1 7 7 C 1.40042 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00353 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99918 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99876 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99665 * 179.72458 * 11 9 7 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 H 1.08996 * 109.99771 * 306.34721 * 13 12 11 15 15 C 1.56221 * 110.01558 * 185.00142 * 13 12 11 16 16 C 1.52905 * 100.40311 * 217.66206 * 15 13 12 17 17 H 1.09003 * 112.64561 * 281.37443 * 16 15 13 18 18 C 1.51879 * 120.20136 * 144.92431 * 16 15 13 19 19 O 1.45124 * 105.94466 * 224.84240 * 18 16 15 20 20 C 1.45922 * 109.26422 * 7.00835 * 19 18 16 21 21 C 1.49263 * 102.82201 * 23.76888 * 20 19 18 22 22 H 1.09000 * 105.91811 * 62.85553 * 21 20 19 23 23 O 1.37298 * 134.29294 * 194.95481 * 21 20 19 24 24 H 0.97004 * 119.99544 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 11 9 7 26 26 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 27 27 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 28 28 H 1.09001 * 111.23022 * 335.44571 * 15 13 12 29 29 H 1.09000 * 111.22933 * 99.86858 * 15 13 12 30 30 H 1.08999 * 110.15619 * 343.96325 * 18 16 15 31 31 H 1.09002 * 110.16175 * 105.65151 * 18 16 15 32 32 H 1.09000 * 110.74317 * 142.10401 * 20 19 18 33 33 H 1.08995 * 110.74220 * 265.25562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9164 0.0045 13 6 2.2106 -6.0793 0.0089 14 1 2.9136 -5.9718 -0.8171 15 6 1.4465 -7.4365 -0.1126 16 6 2.2867 -8.3107 0.8190 17 1 3.2113 -8.6522 0.3535 18 6 1.6239 -9.3879 1.6599 19 8 2.1988 -9.2677 2.9870 20 6 3.0434 -8.0789 3.0399 21 6 2.4846 -7.2267 1.9493 22 1 1.4588 -7.0019 2.2415 23 8 2.9303 -6.1159 1.2767 24 1 -0.4850 0.8401 -0.0004 25 1 2.9189 -3.6477 -0.0020 26 1 0.5903 -4.9703 0.8953 27 1 0.5891 -4.9781 -0.8847 28 1 0.4220 -7.3463 0.2485 29 1 1.4705 -7.8128 -1.1353 30 1 0.5472 -9.2232 1.7007 31 1 1.8373 -10.3729 1.2449 32 1 2.9496 -7.5813 4.0052 33 1 4.0836 -8.3351 2.8388 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724554021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:56 Heat of formation + Delta-G solvation = -101.433975 kcal Electronic energy + Delta-G solvation = -17363.825192 eV Core-core repulsion = 14390.653670 eV Total energy + Delta-G solvation = -2973.171522 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.29724 -37.96229 -36.97416 -33.50066 -32.65618 -32.23835 -30.11643 -28.74532 -26.69164 -24.91362 -22.41727 -21.13395 -20.85828 -19.56674 -17.94266 -17.20239 -16.34799 -15.77611 -15.40013 -15.27591 -14.89449 -14.34510 -13.99045 -13.49833 -13.29193 -13.03718 -12.65191 -12.41702 -12.10911 -11.94293 -11.39742 -11.28118 -11.06287 -10.91505 -10.85131 -10.51634 -10.39089 -10.21648 -9.92234 -9.33550 -8.82535 -7.61026 -7.49173 -6.16488 -4.61625 2.96432 3.17856 3.22335 3.24581 3.53242 4.08863 4.15071 4.38789 4.48609 4.61112 4.87158 4.92858 4.97029 5.01753 5.20685 5.31341 5.46268 5.47397 5.52549 5.59547 5.66342 5.73294 5.84700 5.95233 6.30229 6.39482 6.47691 7.02680 7.45746 7.95908 8.10578 8.35168 9.04684 9.55868 10.62163 10.80501 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.052295 B = 0.004652 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.296811 B = 6017.812285 C = 6210.498334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.584 6.584 11 N -0.763 5.763 12 C 0.125 3.875 13 C 0.072 3.928 14 H 0.098 0.902 15 C -0.130 4.130 16 C -0.189 4.189 17 H 0.103 0.897 18 C 0.063 3.937 19 O -0.380 6.380 20 C 0.082 3.918 21 C 0.039 3.961 22 H 0.044 0.956 23 O -0.334 6.334 24 H 0.268 0.732 25 H 0.383 0.617 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 -15.697 1.073 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.467 6.467 11 N -0.419 5.419 12 C -0.001 4.001 13 C 0.016 3.984 14 H 0.116 0.884 15 C -0.168 4.168 16 C -0.208 4.208 17 H 0.121 0.879 18 C -0.013 4.013 19 O -0.300 6.300 20 C 0.005 3.995 21 C -0.021 4.021 22 H 0.062 0.938 23 O -0.252 6.252 24 H 0.079 0.921 25 H 0.215 0.785 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.936 -15.578 1.305 16.393 hybrid contribution 0.767 0.808 -0.323 1.160 sum 5.703 -14.769 0.981 15.863 Atomic orbital electron populations 1.70019 1.07073 1.27323 1.35417 1.25707 0.94616 1.00281 0.92603 0.86425 0.79800 0.80996 0.79454 1.19291 1.20575 1.19264 1.20853 0.93593 0.89386 1.54366 0.91437 1.18221 0.87178 0.82456 0.76292 1.90590 1.14127 1.86894 1.55071 1.46046 1.08706 1.04466 1.82684 1.21211 0.93541 0.84072 1.01270 1.24210 0.93969 0.94879 0.85381 0.88423 1.22724 0.99551 0.93726 1.00792 1.24122 1.01393 0.96972 0.98270 0.87897 1.22517 0.97752 0.98419 0.82628 1.89296 1.65420 1.44304 1.31009 1.22047 0.94623 0.84813 0.97995 1.22258 0.98612 0.86928 0.94334 0.93821 1.87784 1.64854 1.41596 1.30972 0.92091 0.78518 0.92939 0.91959 0.89512 0.89296 0.90864 0.90205 0.88206 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.42 11.83 55.55 0.66 -22.77 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.40 29.56 -169.99 -5.02 15.38 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.54 -15.72 9.54 -35.63 -0.34 -16.06 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.55 16.16 7.75 -12.99 -0.10 16.06 16 10 O -0.58 -19.26 15.02 5.20 0.08 -19.18 16 11 N -0.76 -17.58 5.54 -61.72 -0.34 -17.92 16 12 C 0.12 2.39 5.29 -4.04 -0.02 2.37 16 13 C 0.07 1.03 3.53 -25.00 -0.09 0.94 16 14 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 15 C -0.13 -1.42 6.03 -25.05 -0.15 -1.57 16 16 C -0.19 -1.97 3.74 -88.58 -0.33 -2.30 16 17 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 18 C 0.06 0.62 7.38 36.59 0.27 0.89 16 19 O -0.38 -4.57 11.56 -35.23 -0.41 -4.97 16 20 C 0.08 0.91 7.62 35.32 0.27 1.18 16 21 C 0.04 0.51 3.85 -25.91 -0.10 0.41 16 22 H 0.04 0.63 7.38 -51.93 -0.38 0.25 16 23 O -0.33 -5.22 11.04 -24.04 -0.27 -5.49 16 24 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 25 H 0.38 7.95 8.45 -40.82 -0.35 7.60 16 26 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.09 0.96 7.84 -51.93 -0.41 0.55 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 279.10 15.07 4.21 4.21 Total: -1.00 -35.33 279.10 -6.27 -41.60 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.48 Total: 4.84 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.69 Total: 4.30 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.31 Total: -40.68 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.59 Total: -29.64 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -35.33 -6.27 -41.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724554021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.834 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds