Wall clock time and date at job start Mon Mar 30 2020 04:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21276 * 119.99985 * 2 1 4 4 N 1.34776 * 119.99493 * 179.97438 * 2 1 3 5 5 C 1.47587 * 134.48555 * 180.02562 * 4 2 1 6 6 C 1.53944 * 86.11245 * 155.35942 * 5 4 2 7 7 C 1.50705 * 113.73923 * 137.95139 * 6 5 4 8 8 O 1.20826 * 120.00007 * 1.92686 * 7 6 5 9 9 O 1.34232 * 119.99952 * 181.92532 * 7 6 5 10 10 C 1.45200 * 117.00036 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47087 * 29.99298 * 10 9 7 12 12 C 1.53005 * 109.46596 * 269.99777 * 10 9 7 13 13 C 1.50701 * 109.47210 * 150.00195 * 10 9 7 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27726 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 C 1.47811 * 134.46241 * 359.86920 * 4 2 1 22 22 H 1.08997 * 109.47420 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47358 * 300.00625 * 1 2 3 24 24 H 1.09008 * 109.46792 * 60.00507 * 1 2 3 25 25 H 1.08996 * 113.77118 * 41.06236 * 5 4 2 26 26 H 1.08998 * 113.87086 * 269.66963 * 5 4 2 27 27 H 1.09000 * 113.74476 * 269.15397 * 6 5 4 28 28 H 1.08995 * 109.47438 * 299.99524 * 12 10 9 29 29 H 1.08996 * 109.47069 * 60.00384 * 12 10 9 30 30 H 1.09004 * 109.46658 * 179.97438 * 12 10 9 31 31 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 32 32 H 1.09004 * 113.76571 * 90.37737 * 21 4 2 33 33 H 1.08998 * 113.83294 * 318.91917 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6097 -1.5365 0.0012 6 6 3.1591 -2.8619 0.6416 7 6 3.8592 -4.0743 0.0837 8 8 4.7130 -3.9434 -0.7612 9 8 3.5342 -5.2995 0.5253 10 6 4.2498 -6.4211 -0.0562 11 1 5.2515 -6.1027 -0.3448 12 6 3.4977 -6.9206 -1.2915 13 6 4.3481 -7.5334 0.9558 14 1 3.9163 -7.4095 1.9380 15 6 4.9947 -8.7067 0.6299 16 7 5.5207 -8.8574 -0.5660 17 14 5.1233 -10.0824 1.8870 18 1 3.7606 -10.5214 2.2816 19 1 5.8594 -11.2277 1.2938 20 1 5.8518 -9.5922 3.0846 21 6 1.7847 -2.5913 0.0036 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 4.2230 -0.9182 0.6565 26 1 4.0357 -1.6527 -0.9954 27 1 3.1483 -2.8414 1.7314 28 1 2.4960 -7.2389 -1.0030 29 1 3.4266 -6.1161 -2.0235 30 1 4.0351 -7.7623 -1.7283 31 1 5.9759 -9.6827 -0.7951 32 1 1.6714 -3.0179 -0.9931 33 1 0.9439 -2.8132 0.6608 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788360628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:11 Heat of formation + Delta-G solvation = -92.526314 kcal Electronic energy + Delta-G solvation = -17138.110377 eV Core-core repulsion = 14165.325120 eV Total energy + Delta-G solvation = -2972.785257 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.75116 -39.25968 -37.60954 -35.70683 -33.32167 -31.33826 -29.80459 -28.72577 -26.29683 -25.38668 -24.15923 -21.24676 -19.55969 -19.07158 -17.54002 -17.13869 -16.64217 -16.04970 -15.81314 -15.15975 -14.91185 -14.50231 -13.72822 -13.23322 -13.03184 -12.83902 -12.66327 -12.62282 -12.25485 -11.93304 -11.85217 -11.31917 -11.11255 -11.09543 -10.90664 -10.45813 -10.33597 -10.10443 -9.70893 -9.61165 -8.98973 -8.88527 -8.54447 -6.23452 -4.31002 2.45613 2.59332 2.74625 3.23098 3.26935 3.28778 3.56285 4.15961 4.28696 4.30711 4.74808 4.93885 5.03344 5.09971 5.20516 5.21278 5.32460 5.46734 5.52727 5.61007 5.71972 5.96704 6.55658 6.80340 6.82777 7.06906 7.49413 7.53073 7.65193 7.85310 7.98144 8.06876 8.52085 8.80047 9.34820 10.83886 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.055421 B = 0.004526 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.102816 B = 6184.332485 C = 6276.964074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.535 3.465 3 O -0.551 6.551 4 N -0.647 5.647 5 C 0.125 3.875 6 C -0.124 4.124 7 C 0.462 3.538 8 O -0.515 6.515 9 O -0.352 6.352 10 C 0.214 3.786 11 H 0.047 0.953 12 C -0.154 4.154 13 C -0.523 4.523 14 H 0.069 0.931 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.912 3.088 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.121 3.879 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.037 0.963 29 H 0.016 0.984 30 H 0.099 0.901 31 H 0.267 0.733 32 H 0.095 0.905 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.472 10.182 1.611 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.326 3.674 3 O -0.428 6.428 4 N -0.384 5.384 5 C 0.003 3.997 6 C -0.144 4.144 7 C 0.304 3.696 8 O -0.404 6.404 9 O -0.268 6.268 10 C 0.162 3.838 11 H 0.065 0.935 12 C -0.212 4.212 13 C -0.561 4.561 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.739 3.261 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.001 4.001 22 H 0.095 0.905 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.151 0.849 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.910 10.783 1.238 14.043 hybrid contribution 0.184 -0.933 0.451 1.052 sum -8.727 9.850 1.689 13.268 Atomic orbital electron populations 1.21812 0.91211 1.04397 1.05174 1.20498 0.90238 0.81586 0.75110 1.90724 1.70829 1.30461 1.50831 1.50161 1.09201 1.05533 1.73497 1.23112 0.83396 0.90810 1.02352 1.23000 0.96644 0.91487 1.03260 1.22833 0.80978 0.85790 0.80037 1.90626 1.31396 1.87230 1.31191 1.86493 1.62148 1.15162 1.62949 1.20684 0.91416 0.79521 0.92149 0.93483 1.22163 1.00294 1.01502 0.97262 1.20976 1.37234 0.98454 0.99466 0.91308 1.24883 0.94730 0.98342 0.95949 1.69882 1.36220 1.27136 1.19416 0.86323 0.78431 0.80491 0.80831 1.19914 1.21019 1.19965 1.23179 0.96622 0.78627 1.01706 0.90452 0.88703 0.88689 0.89139 0.87958 0.84894 0.94346 0.96539 0.88228 0.92278 0.88678 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.34 36.01 0.37 -0.94 16 2 C 0.53 6.77 8.17 -10.99 -0.09 6.68 16 3 O -0.55 -9.32 17.83 5.56 0.10 -9.22 16 4 N -0.65 -7.82 3.61 -178.25 -0.64 -8.46 16 5 C 0.13 1.63 8.17 -2.96 -0.02 1.61 16 6 C -0.12 -1.62 4.44 -90.86 -0.40 -2.02 16 7 C 0.46 8.67 7.46 36.01 0.27 8.94 16 8 O -0.51 -11.19 15.13 -18.75 -0.28 -11.48 16 9 O -0.35 -7.71 9.86 -39.26 -0.39 -8.10 16 10 C 0.21 5.50 2.56 -27.88 -0.07 5.43 16 11 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 12 C -0.15 -3.72 9.33 37.16 0.35 -3.38 16 13 C -0.52 -14.18 8.89 -34.44 -0.31 -14.49 16 14 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 15 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 16 N -0.89 -24.64 11.33 55.43 0.63 -24.01 16 17 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.12 1.27 7.71 -2.85 -0.02 1.25 16 22 H 0.08 0.47 7.22 -51.93 -0.37 0.09 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.10 1.43 7.43 -51.93 -0.39 1.05 16 27 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 2.60 6.08 -51.93 -0.32 2.28 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 33 H 0.10 0.77 7.97 -51.93 -0.41 0.35 16 LS Contribution 289.92 15.07 4.37 4.37 Total: -1.00 -32.33 289.92 -5.63 -37.96 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.36 Total: -1.24 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.02 Total: 4.69 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: -0.02 Total: -32.47 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.57 Total: -28.80 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.33 -5.63 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788360628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.566 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds