Wall clock time and date at job start Mon Mar 30 2020 04:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21276 * 119.99985 * 2 1 4 4 N 1.34776 * 119.99493 * 179.97438 * 2 1 3 5 5 C 1.47587 * 134.48555 * 180.02562 * 4 2 1 6 6 C 1.53944 * 86.11245 * 155.35942 * 5 4 2 7 7 C 1.50705 * 113.73923 * 137.95139 * 6 5 4 8 8 O 1.20826 * 120.00007 * 1.92686 * 7 6 5 9 9 O 1.34232 * 119.99952 * 181.92532 * 7 6 5 10 10 C 1.45200 * 117.00036 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47087 * 29.99298 * 10 9 7 12 12 C 1.53005 * 109.46596 * 269.99777 * 10 9 7 13 13 C 1.50701 * 109.47210 * 150.00195 * 10 9 7 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99694 * 180.27726 * 13 10 9 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 10 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 10 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 C 1.47811 * 134.46241 * 359.86920 * 4 2 1 22 22 H 1.08997 * 109.47420 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47358 * 300.00625 * 1 2 3 24 24 H 1.09008 * 109.46792 * 60.00507 * 1 2 3 25 25 H 1.08996 * 113.77118 * 41.06236 * 5 4 2 26 26 H 1.08998 * 113.87086 * 269.66963 * 5 4 2 27 27 H 1.09000 * 113.74476 * 269.15397 * 6 5 4 28 28 H 1.08995 * 109.47438 * 299.99524 * 12 10 9 29 29 H 1.08996 * 109.47069 * 60.00384 * 12 10 9 30 30 H 1.09004 * 109.46658 * 179.97438 * 12 10 9 31 31 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 32 32 H 1.09004 * 113.76571 * 90.37737 * 21 4 2 33 33 H 1.08998 * 113.83294 * 318.91917 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6097 -1.5365 0.0012 6 6 3.1591 -2.8619 0.6416 7 6 3.8592 -4.0743 0.0837 8 8 4.7130 -3.9434 -0.7612 9 8 3.5342 -5.2995 0.5253 10 6 4.2498 -6.4211 -0.0562 11 1 5.2515 -6.1027 -0.3448 12 6 3.4977 -6.9206 -1.2915 13 6 4.3481 -7.5334 0.9558 14 1 3.9163 -7.4095 1.9380 15 6 4.9947 -8.7067 0.6299 16 7 5.5207 -8.8574 -0.5660 17 14 5.1233 -10.0824 1.8870 18 1 3.7606 -10.5214 2.2816 19 1 5.8594 -11.2277 1.2938 20 1 5.8518 -9.5922 3.0846 21 6 1.7847 -2.5913 0.0036 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 4.2230 -0.9182 0.6565 26 1 4.0357 -1.6527 -0.9954 27 1 3.1483 -2.8414 1.7314 28 1 2.4960 -7.2389 -1.0030 29 1 3.4266 -6.1161 -2.0235 30 1 4.0351 -7.7623 -1.7283 31 1 5.9759 -9.6827 -0.7951 32 1 1.6714 -3.0179 -0.9931 33 1 0.9439 -2.8132 0.6608 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788360628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:11 Heat of formation + Delta-G solvation = -113.836443 kcal Electronic energy + Delta-G solvation = -17139.034453 eV Core-core repulsion = 14165.325120 eV Total energy + Delta-G solvation = -2973.709333 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.97885 -40.64311 -38.79437 -37.41582 -35.30358 -32.37114 -31.61445 -29.70073 -27.43525 -27.22636 -25.49124 -22.96044 -21.07951 -20.04604 -19.03695 -18.56612 -18.08164 -17.54716 -17.04961 -16.58364 -16.45840 -15.92773 -15.12714 -14.52134 -14.30488 -14.16337 -13.86063 -13.64263 -13.47215 -13.25112 -13.13537 -12.92959 -12.89846 -12.78142 -12.35767 -12.19220 -12.10313 -11.57892 -11.43747 -10.98846 -10.94257 -10.57003 -9.91036 -8.26470 -6.43216 1.24582 1.44337 1.47899 1.50329 1.54488 1.59489 2.11713 2.44629 3.04793 3.10485 3.40830 3.79007 3.93386 4.11129 4.28614 4.41874 4.46911 4.55871 4.58163 4.65313 4.69902 4.81420 4.86629 4.95259 5.07380 5.19610 5.51434 5.66538 5.94672 6.10045 6.56107 6.61789 6.94844 7.02007 7.28778 8.80727 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.055421 B = 0.004526 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.102816 B = 6184.332485 C = 6276.964074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.528 3.472 3 O -0.602 6.602 4 N -0.645 5.645 5 C 0.118 3.882 6 C -0.114 4.114 7 C 0.460 3.540 8 O -0.550 6.550 9 O -0.354 6.354 10 C 0.216 3.784 11 H 0.006 0.994 12 C -0.142 4.142 13 C -0.548 4.548 14 H 0.070 0.930 15 C 0.017 3.983 16 N -0.918 5.918 17 Si 0.981 3.019 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.269 1.269 21 C 0.132 3.868 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.159 0.841 28 H 0.050 0.950 29 H 0.026 0.974 30 H 0.077 0.923 31 H 0.270 0.730 32 H 0.097 0.903 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.549 9.945 2.905 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.322 3.678 3 O -0.483 6.483 4 N -0.381 5.381 5 C -0.005 4.005 6 C -0.133 4.133 7 C 0.304 3.696 8 O -0.441 6.441 9 O -0.270 6.270 10 C 0.163 3.837 11 H 0.024 0.976 12 C -0.200 4.200 13 C -0.585 4.585 14 H 0.088 0.912 15 C -0.183 4.183 16 N -0.556 5.556 17 Si 0.804 3.196 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.194 1.194 21 C 0.010 3.990 22 H 0.120 0.880 23 H 0.127 0.873 24 H 0.123 0.877 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.177 0.823 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.016 10.547 2.533 15.460 hybrid contribution 0.873 -0.784 0.006 1.173 sum -10.144 9.763 2.539 14.306 Atomic orbital electron populations 1.21864 0.87016 1.06434 1.06323 1.21448 0.92093 0.80642 0.73658 1.90702 1.72223 1.32226 1.53192 1.50206 1.08585 1.06339 1.72942 1.23074 0.84621 0.91105 1.01696 1.23127 0.97786 0.87905 1.04502 1.23930 0.80494 0.85977 0.79219 1.90616 1.33103 1.87473 1.32897 1.86478 1.61741 1.15736 1.63063 1.20358 0.90117 0.80551 0.92695 0.97578 1.21974 1.00252 1.00906 0.96819 1.21288 1.37996 0.99349 0.99894 0.91157 1.25801 0.93950 1.00696 0.97854 1.70011 1.36523 1.27851 1.21178 0.85263 0.78917 0.77200 0.78222 1.18666 1.20572 1.19429 1.23339 0.96100 0.77084 1.02455 0.87963 0.87272 0.87677 0.88751 0.89556 0.82304 0.93115 0.95542 0.90448 0.92078 0.88535 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.34 71.24 0.74 -1.19 16 2 C 0.53 12.36 8.17 87.66 0.72 13.07 16 3 O -0.60 -20.08 17.83 -3.02 -0.05 -20.13 16 4 N -0.65 -14.21 3.61 -836.25 -3.02 -17.23 16 5 C 0.12 2.99 8.17 86.48 0.71 3.69 16 6 C -0.11 -2.75 4.44 -10.89 -0.05 -2.80 16 7 C 0.46 17.14 7.46 71.24 0.53 17.67 16 8 O -0.55 -24.53 15.13 21.96 0.33 -24.20 16 9 O -0.35 -15.43 9.86 -51.44 -0.51 -15.94 16 10 C 0.22 11.27 2.56 29.85 0.08 11.35 16 11 H 0.01 0.38 7.16 -2.39 -0.02 0.36 16 12 C -0.14 -6.89 9.33 71.98 0.67 -6.22 16 13 C -0.55 -29.78 8.89 25.60 0.23 -29.56 16 14 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 15 C 0.02 0.89 5.31 84.65 0.45 1.34 16 16 N -0.92 -51.49 11.33 21.45 0.24 -51.24 16 17 Si 0.98 41.47 29.54 68.60 2.03 43.50 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 19 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 21 C 0.13 2.34 7.71 86.43 0.67 3.01 16 22 H 0.10 0.74 7.22 -2.39 -0.02 0.73 16 23 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.09 2.47 7.43 -2.39 -0.02 2.46 16 27 H 0.16 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 4.12 6.08 -2.38 -0.01 4.10 16 31 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.10 1.75 8.09 -2.38 -0.02 1.73 16 33 H 0.14 1.43 7.97 -2.39 -0.02 1.41 16 Total: -1.00 -71.96 289.92 4.86 -67.10 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.11 Total: 7.77 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 4.73 Total: 10.38 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -2.78 Total: -68.47 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: -0.23 Total: -60.27 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -71.96 4.86 -67.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788360628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.732 kcal (2) G-P(sol) polarization free energy of solvation -71.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds