Wall clock time and date at job start Mon Mar 30 2020 04:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.47063 * 136.06196 * 359.63468 * 4 2 1 6 6 C 1.53747 * 87.89242 * 152.96007 * 5 4 2 7 7 C 1.50695 * 114.27085 * 139.79317 * 6 5 4 8 8 O 1.20829 * 119.99863 * 266.48013 * 7 6 5 9 9 O 1.34233 * 120.00476 * 86.47060 * 7 6 5 10 10 C 1.45201 * 117.00291 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46926 * 330.00491 * 10 9 7 12 12 C 1.52994 * 109.46870 * 90.00197 * 10 9 7 13 13 C 1.50705 * 109.46987 * 210.00262 * 10 9 7 14 14 H 1.08001 * 119.99771 * 0.02562 * 13 10 9 15 15 C 1.37869 * 119.99784 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00167 * 179.97438 * 15 13 10 17 17 Si 1.86805 * 120.00202 * 0.02562 * 15 13 10 18 18 H 1.48503 * 109.46936 * 89.99696 * 17 15 13 19 19 H 1.48501 * 109.47291 * 209.99852 * 17 15 13 20 20 H 1.48502 * 109.47031 * 329.99873 * 17 15 13 21 21 C 1.47066 * 136.05495 * 179.97438 * 4 2 1 22 22 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 24 24 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 25 25 H 1.09000 * 113.46723 * 267.69839 * 5 4 2 26 26 H 1.09004 * 113.46617 * 38.12776 * 5 4 2 27 27 H 1.09007 * 114.39667 * 272.67638 * 6 5 4 28 28 H 1.09001 * 109.47125 * 179.97438 * 12 10 9 29 29 H 1.08994 * 109.47557 * 299.99903 * 12 10 9 30 30 H 1.09002 * 109.47106 * 60.00404 * 12 10 9 31 31 H 0.97005 * 120.00658 * 180.02562 * 16 15 13 32 32 H 1.09001 * 113.47292 * 321.87108 * 21 4 2 33 33 H 1.09003 * 113.46573 * 92.31221 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8266 -2.5945 0.0077 6 6 3.1645 -2.8719 -0.6972 7 6 3.8799 -4.1038 -0.2057 8 8 4.7110 -4.0122 0.6665 9 8 3.5937 -5.3030 -0.7367 10 6 4.3212 -6.4459 -0.2143 11 1 5.3083 -6.1264 0.1198 12 6 3.5522 -7.0439 0.9654 13 6 4.4687 -7.4846 -1.2962 14 1 4.0573 -7.3036 -2.2783 15 6 5.1299 -8.6653 -1.0326 16 7 5.2583 -9.5720 -1.9765 17 14 5.8421 -8.9780 0.6658 18 1 4.8237 -9.6478 1.5140 19 1 7.0389 -9.8493 0.5480 20 1 6.2299 -7.6854 1.2855 21 6 3.5941 -1.5740 0.0002 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3633 -0.5139 -0.8900 25 1 1.7665 -3.0218 1.0086 26 1 0.9552 -2.8285 -0.6040 27 1 3.1236 -2.8024 -1.7843 28 1 4.0981 -7.9022 1.3573 29 1 3.4455 -6.2927 1.7479 30 1 2.5651 -7.3634 0.6313 31 1 5.7231 -10.4029 -1.7910 32 1 4.2287 -0.9387 -0.6177 33 1 4.0005 -1.7321 0.9993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788360629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:12 Heat of formation + Delta-G solvation = -78.997648 kcal Electronic energy + Delta-G solvation = -17187.277612 eV Core-core repulsion = 14215.079003 eV Total energy + Delta-G solvation = -2972.198610 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.98459 -39.45575 -37.84021 -35.94917 -33.28300 -31.46515 -30.70774 -28.95677 -26.19832 -25.37835 -24.41582 -21.41453 -19.75850 -19.18217 -17.80026 -17.14943 -16.67220 -16.30578 -16.03811 -15.30754 -15.26065 -14.48072 -13.98914 -13.32271 -13.05988 -13.04226 -12.85393 -12.67258 -12.56014 -12.37068 -12.13588 -11.89538 -11.58107 -11.03418 -10.94371 -10.31907 -10.25801 -10.02182 -9.87269 -9.66706 -9.20855 -8.98264 -8.75274 -6.28574 -4.31759 2.38344 2.50322 2.54119 3.13610 3.26828 3.27642 3.38434 4.02344 4.20824 4.23787 4.64060 4.89785 4.94828 5.02545 5.10775 5.15574 5.22293 5.34182 5.40943 5.46138 5.64857 5.86703 6.06189 6.18591 6.30622 6.50258 6.92886 7.24947 7.41898 7.45125 7.90262 8.11055 8.46854 8.77691 9.27955 10.83440 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.057176 B = 0.004769 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.597148 B = 5869.624432 C = 5956.947786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.542 3.458 3 O -0.547 6.547 4 N -0.650 5.650 5 C 0.120 3.880 6 C -0.126 4.126 7 C 0.467 3.533 8 O -0.515 6.515 9 O -0.336 6.336 10 C 0.190 3.810 11 H 0.047 0.953 12 C -0.170 4.170 13 C -0.527 4.527 14 H 0.088 0.912 15 C 0.081 3.919 16 N -0.887 5.887 17 Si 0.879 3.121 18 H -0.273 1.273 19 H -0.289 1.289 20 H -0.262 1.262 21 C 0.121 3.879 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.138 0.862 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.270 0.730 32 H 0.088 0.912 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 12.554 4.352 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.333 3.667 3 O -0.424 6.424 4 N -0.387 5.387 5 C -0.003 4.003 6 C -0.146 4.146 7 C 0.308 3.692 8 O -0.405 6.405 9 O -0.251 6.251 10 C 0.136 3.864 11 H 0.065 0.935 12 C -0.227 4.227 13 C -0.565 4.565 14 H 0.106 0.894 15 C -0.123 4.123 16 N -0.524 5.524 17 Si 0.708 3.292 18 H -0.200 1.200 19 H -0.216 1.216 20 H -0.187 1.187 21 C -0.001 4.001 22 H 0.112 0.888 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.156 0.844 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.703 13.130 4.548 16.396 hybrid contribution 0.473 -0.567 0.960 1.211 sum -8.230 12.563 5.508 15.997 Atomic orbital electron populations 1.21867 0.90883 1.05423 1.04482 1.20394 0.90156 0.81074 0.75062 1.90736 1.70920 1.30249 1.50506 1.49618 1.09698 1.05610 1.73745 1.22950 0.97032 0.79056 1.01266 1.22816 0.97237 0.91202 1.03342 1.22818 0.80717 0.85741 0.79896 1.90628 1.32462 1.87128 1.30280 1.86519 1.62171 1.15698 1.60678 1.20977 0.91015 0.80902 0.93466 0.93525 1.22526 1.02120 1.00041 0.98029 1.20769 1.37832 0.99640 0.98247 0.89436 1.24727 0.95065 0.95316 0.97190 1.69829 1.41720 1.07922 1.32899 0.86974 0.78675 0.79010 0.84528 1.19965 1.21625 1.18720 1.22902 0.84087 0.91111 1.02007 0.88831 0.89352 0.89192 0.88766 0.88631 0.84406 0.92471 0.94429 0.91688 0.91989 0.89363 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.15 36.01 0.37 -0.84 16 2 C 0.54 6.51 8.19 -10.98 -0.09 6.42 16 3 O -0.55 -8.95 17.86 5.56 0.10 -8.85 16 4 N -0.65 -7.35 3.69 -185.10 -0.68 -8.03 16 5 C 0.12 1.16 8.00 -8.39 -0.07 1.09 16 6 C -0.13 -1.53 4.61 -91.14 -0.42 -1.95 16 7 C 0.47 8.14 7.50 36.00 0.27 8.41 16 8 O -0.52 -10.32 15.17 -18.75 -0.28 -10.60 16 9 O -0.34 -6.97 9.86 -39.27 -0.39 -7.35 16 10 C 0.19 4.53 2.15 -27.88 -0.06 4.47 16 11 H 0.05 1.18 6.21 -51.93 -0.32 0.86 16 12 C -0.17 -3.63 9.03 37.15 0.34 -3.29 16 13 C -0.53 -14.54 9.48 -34.44 -0.33 -14.87 16 14 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 15 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 16 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 17 Si 0.88 20.97 24.37 -169.99 -4.14 16.83 16 18 H -0.27 -6.23 6.87 56.52 0.39 -5.84 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 21 C 0.12 1.47 7.96 -8.53 -0.07 1.41 16 22 H 0.09 0.65 8.12 -51.93 -0.42 0.22 16 23 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.14 1.47 8.14 -51.92 -0.42 1.04 16 28 H 0.06 1.26 3.27 -51.93 -0.17 1.09 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.30 7.46 -51.93 -0.39 0.92 16 LS Contribution 284.46 15.07 4.29 4.29 Total: -1.00 -33.27 284.46 -4.78 -38.05 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.29 Total: -2.06 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.16 Total: 2.99 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.09 Total: -33.29 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.57 Total: -26.80 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.83 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.27 -4.78 -38.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788360629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.946 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds