Wall clock time and date at job start Mon Mar 30 2020 04:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.47063 * 136.06196 * 359.63468 * 4 2 1 6 6 C 1.53747 * 87.89242 * 152.96007 * 5 4 2 7 7 C 1.50695 * 114.27085 * 139.79317 * 6 5 4 8 8 O 1.20829 * 119.99863 * 266.48013 * 7 6 5 9 9 O 1.34233 * 120.00476 * 86.47060 * 7 6 5 10 10 C 1.45201 * 117.00291 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46926 * 330.00491 * 10 9 7 12 12 C 1.52994 * 109.46870 * 90.00197 * 10 9 7 13 13 C 1.50705 * 109.46987 * 210.00262 * 10 9 7 14 14 H 1.08001 * 119.99771 * 0.02562 * 13 10 9 15 15 C 1.37869 * 119.99784 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00167 * 179.97438 * 15 13 10 17 17 Si 1.86805 * 120.00202 * 0.02562 * 15 13 10 18 18 H 1.48503 * 109.46936 * 89.99696 * 17 15 13 19 19 H 1.48501 * 109.47291 * 209.99852 * 17 15 13 20 20 H 1.48502 * 109.47031 * 329.99873 * 17 15 13 21 21 C 1.47066 * 136.05495 * 179.97438 * 4 2 1 22 22 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 24 24 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 25 25 H 1.09000 * 113.46723 * 267.69839 * 5 4 2 26 26 H 1.09004 * 113.46617 * 38.12776 * 5 4 2 27 27 H 1.09007 * 114.39667 * 272.67638 * 6 5 4 28 28 H 1.09001 * 109.47125 * 179.97438 * 12 10 9 29 29 H 1.08994 * 109.47557 * 299.99903 * 12 10 9 30 30 H 1.09002 * 109.47106 * 60.00404 * 12 10 9 31 31 H 0.97005 * 120.00658 * 180.02562 * 16 15 13 32 32 H 1.09001 * 113.47292 * 321.87108 * 21 4 2 33 33 H 1.09003 * 113.46573 * 92.31221 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8266 -2.5945 0.0077 6 6 3.1645 -2.8719 -0.6972 7 6 3.8799 -4.1038 -0.2057 8 8 4.7110 -4.0122 0.6665 9 8 3.5937 -5.3030 -0.7367 10 6 4.3212 -6.4459 -0.2143 11 1 5.3083 -6.1264 0.1198 12 6 3.5522 -7.0439 0.9654 13 6 4.4687 -7.4846 -1.2962 14 1 4.0573 -7.3036 -2.2783 15 6 5.1299 -8.6653 -1.0326 16 7 5.2583 -9.5720 -1.9765 17 14 5.8421 -8.9780 0.6658 18 1 4.8237 -9.6478 1.5140 19 1 7.0389 -9.8493 0.5480 20 1 6.2299 -7.6854 1.2855 21 6 3.5941 -1.5740 0.0002 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5138 0.8900 24 1 -0.3633 -0.5139 -0.8900 25 1 1.7665 -3.0218 1.0086 26 1 0.9552 -2.8285 -0.6040 27 1 3.1236 -2.8024 -1.7843 28 1 4.0981 -7.9022 1.3573 29 1 3.4455 -6.2927 1.7479 30 1 2.5651 -7.3634 0.6313 31 1 5.7231 -10.4029 -1.7910 32 1 4.2287 -0.9387 -0.6177 33 1 4.0005 -1.7321 0.9993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788360629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:12 Heat of formation + Delta-G solvation = -102.674357 kcal Electronic energy + Delta-G solvation = -17188.304312 eV Core-core repulsion = 14215.079003 eV Total energy + Delta-G solvation = -2973.225309 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.12030 -40.75457 -38.94484 -37.52777 -35.27098 -32.79478 -32.16752 -29.78903 -27.33464 -27.04980 -25.67272 -23.02973 -21.20600 -20.07949 -19.30263 -18.57597 -18.11278 -17.73628 -17.23367 -16.67660 -16.50888 -15.86931 -15.31081 -14.72551 -14.62721 -14.19079 -14.17596 -13.79622 -13.68511 -13.51519 -13.27179 -13.22296 -12.96818 -12.82241 -12.20886 -11.94875 -11.75535 -11.64675 -11.42877 -11.20715 -11.00856 -10.81586 -9.93347 -8.42598 -6.51465 1.15616 1.25907 1.33938 1.42556 1.48713 1.52445 2.09655 2.21463 2.90755 3.03765 3.42087 3.72280 3.85113 4.06236 4.26554 4.28861 4.42139 4.44628 4.46405 4.55961 4.57112 4.65387 4.70376 4.79430 4.93682 5.09490 5.24699 5.36495 5.64936 6.14967 6.53517 6.58027 6.85207 7.00182 7.13644 8.73249 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.057176 B = 0.004769 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.597148 B = 5869.624432 C = 5956.947786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.535 3.465 3 O -0.600 6.600 4 N -0.648 5.648 5 C 0.131 3.869 6 C -0.119 4.119 7 C 0.467 3.533 8 O -0.542 6.542 9 O -0.345 6.345 10 C 0.191 3.809 11 H 0.031 0.969 12 C -0.164 4.164 13 C -0.539 4.539 14 H 0.049 0.951 15 C 0.031 3.969 16 N -0.931 5.931 17 Si 0.940 3.060 18 H -0.250 1.250 19 H -0.287 1.287 20 H -0.257 1.257 21 C 0.115 3.885 22 H 0.095 0.905 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.102 0.898 26 H 0.132 0.868 27 H 0.157 0.843 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.275 0.725 32 H 0.086 0.914 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.828 12.959 5.742 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.329 3.671 3 O -0.481 6.481 4 N -0.384 5.384 5 C 0.009 3.991 6 C -0.139 4.139 7 C 0.311 3.689 8 O -0.433 6.433 9 O -0.260 6.260 10 C 0.137 3.863 11 H 0.048 0.952 12 C -0.221 4.221 13 C -0.577 4.577 14 H 0.067 0.933 15 C -0.169 4.169 16 N -0.569 5.569 17 Si 0.765 3.235 18 H -0.175 1.175 19 H -0.214 1.214 20 H -0.181 1.181 21 C -0.008 4.008 22 H 0.113 0.887 23 H 0.129 0.871 24 H 0.132 0.868 25 H 0.120 0.880 26 H 0.150 0.850 27 H 0.175 0.825 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.352 13.531 5.940 18.043 hybrid contribution 0.987 -0.620 0.434 1.244 sum -9.364 12.911 6.374 17.176 Atomic orbital electron populations 1.21907 0.86774 1.06354 1.06621 1.21345 0.91965 0.80179 0.73630 1.90714 1.72312 1.32101 1.53007 1.49663 1.09163 1.06412 1.73123 1.23082 0.96550 0.77480 1.01997 1.22901 0.98519 0.87999 1.04436 1.23738 0.80353 0.85723 0.79096 1.90616 1.33765 1.87276 1.31594 1.86509 1.61907 1.16319 1.61313 1.20652 0.91337 0.81251 0.93048 0.95164 1.22405 1.01963 1.00330 0.97382 1.20973 1.37645 1.01086 0.97956 0.93302 1.25547 0.95242 0.94940 1.01195 1.69956 1.42968 1.08728 1.35288 0.85995 0.78412 0.79194 0.79901 1.17520 1.21409 1.18122 1.22883 0.85158 0.91198 1.01563 0.88665 0.87150 0.86758 0.87994 0.85013 0.82534 0.92922 0.92008 0.90751 0.91602 0.89512 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 10.15 71.24 0.72 -1.01 16 2 C 0.54 11.80 8.19 87.66 0.72 12.51 16 3 O -0.60 -19.38 17.86 -3.03 -0.05 -19.43 16 4 N -0.65 -13.11 3.69 -857.92 -3.16 -16.27 16 5 C 0.13 2.05 8.00 83.26 0.67 2.72 16 6 C -0.12 -2.64 4.61 -11.13 -0.05 -2.69 16 7 C 0.47 15.71 7.50 71.23 0.53 16.24 16 8 O -0.54 -21.23 15.17 21.95 0.33 -20.90 16 9 O -0.35 -14.03 9.86 -51.45 -0.51 -14.54 16 10 C 0.19 9.02 2.15 29.85 0.06 9.08 16 11 H 0.03 1.53 6.21 -2.39 -0.01 1.51 16 12 C -0.16 -6.61 9.03 71.98 0.65 -5.96 16 13 C -0.54 -30.23 9.48 25.60 0.24 -29.99 16 14 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 15 C 0.03 1.71 5.45 84.65 0.46 2.17 16 16 N -0.93 -55.60 13.96 21.44 0.30 -55.30 16 17 Si 0.94 42.63 24.37 68.60 1.67 44.30 16 18 H -0.25 -10.39 6.87 99.48 0.68 -9.71 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.34 6.53 99.48 0.65 -10.69 16 21 C 0.12 2.66 7.96 83.17 0.66 3.32 16 22 H 0.09 1.05 8.12 -2.39 -0.02 1.04 16 23 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.10 1.52 8.10 -2.39 -0.02 1.50 16 26 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.16 2.94 8.14 -2.38 -0.02 2.92 16 28 H 0.05 2.16 3.27 -2.39 -0.01 2.16 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.09 2.32 7.46 -2.39 -0.02 2.30 16 Total: -1.00 -74.11 284.46 4.28 -69.83 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.03 Total: 5.91 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 4.67 Total: 6.40 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -2.86 Total: -71.57 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -0.23 Total: -54.88 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.67 Total: 44.30 kcal Total: -74.11 4.28 -69.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788360629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.840 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds