Wall clock time and date at job start Mon Mar 30 2020 04:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47208 * 2 1 4 4 C 1.50704 * 109.46989 * 240.00626 * 2 1 3 5 5 H 1.08006 * 120.00144 * 240.00071 * 4 2 1 6 6 C 1.37878 * 120.00018 * 59.99735 * 4 2 1 7 7 N 1.31510 * 120.00031 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00036 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47263 * 60.00189 * 8 6 4 10 10 H 1.48503 * 109.47124 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47411 * 300.00095 * 8 6 4 12 12 O 1.45201 * 109.47252 * 120.00683 * 2 1 3 13 13 C 1.34227 * 116.99710 * 269.99464 * 12 2 1 14 14 O 1.20824 * 120.00267 * 0.02562 * 13 12 2 15 15 C 1.50707 * 119.99703 * 179.97438 * 13 12 2 16 16 H 1.09002 * 110.21235 * 39.53149 * 15 13 12 17 17 C 1.54831 * 110.29279 * 277.55725 * 15 13 12 18 18 C 1.54631 * 101.60220 * 215.53072 * 17 15 13 19 19 C 1.51281 * 104.31067 * 24.82962 * 18 17 15 20 20 O 1.21288 * 124.93742 * 163.64367 * 19 18 17 21 21 N 1.34418 * 110.11952 * 343.67722 * 19 18 17 22 22 C 1.46493 * 124.35106 * 179.57371 * 21 19 18 23 23 H 1.08999 * 109.47208 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46782 * 299.99213 * 1 2 3 25 25 H 1.08997 * 109.47605 * 59.99234 * 1 2 3 26 26 H 0.96997 * 120.00639 * 180.02562 * 7 6 4 27 27 H 1.08999 * 111.07622 * 97.45615 * 17 15 13 28 28 H 1.08994 * 111.01534 * 333.58427 * 17 15 13 29 29 H 1.09002 * 110.48855 * 266.08223 * 18 17 15 30 30 H 1.08998 * 110.48570 * 143.57284 * 18 17 15 31 31 H 1.09003 * 109.47025 * 0.02562 * 22 21 19 32 32 H 1.09001 * 109.47220 * 120.02572 * 22 21 19 33 33 H 1.09003 * 109.47400 * 240.02621 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 1.8256 -2.5199 -4.0080 10 1 1.8257 -0.4201 -5.2205 11 1 3.8061 -1.1206 -4.0084 12 8 2.0140 -0.6846 1.1855 13 6 2.2173 0.0638 2.2810 14 8 1.9976 1.2515 2.2506 15 6 2.7184 -0.5776 3.5494 16 1 3.4711 -1.3314 3.3183 17 6 1.5428 -1.2154 4.3294 18 6 1.9657 -0.9581 5.7944 19 6 2.8759 0.2476 5.7146 20 8 3.1960 0.9399 6.6576 21 7 3.2778 0.4404 4.4465 22 6 4.1604 1.5272 4.0152 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.7088 1.1617 -3.4842 27 1 1.4713 -2.2838 4.1260 28 1 0.6033 -0.7125 4.1005 29 1 2.5050 -1.8177 6.1923 30 1 1.0937 -0.7377 6.4100 31 1 4.4306 2.1390 4.8759 32 1 5.0626 1.1077 3.5700 33 1 3.6447 2.1436 3.2788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821624536.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:14 Heat of formation + Delta-G solvation = -120.124493 kcal Electronic energy + Delta-G solvation = -17661.694562 eV Core-core repulsion = 14687.712558 eV Total energy + Delta-G solvation = -2973.982004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83054 -39.20706 -36.55919 -35.56828 -33.38325 -32.78111 -29.91195 -28.30557 -26.60836 -25.39600 -23.13567 -21.69146 -20.03048 -19.28376 -17.63277 -16.98320 -16.41609 -16.04405 -15.68688 -15.14967 -14.82023 -14.24218 -13.92755 -13.52219 -13.18545 -12.85982 -12.54541 -12.44334 -12.15513 -11.91697 -11.65760 -11.32114 -11.18583 -11.11214 -10.92396 -10.47041 -10.35571 -10.01131 -9.81314 -9.66735 -9.02682 -8.69156 -8.55140 -6.25524 -4.33350 2.48158 2.65666 2.90642 3.21616 3.25643 3.27523 3.50607 4.20927 4.25192 4.36010 4.80538 4.83604 5.07636 5.24962 5.36733 5.48032 5.56447 5.64639 5.71802 5.82777 6.00006 6.36287 6.53282 6.78712 6.80387 7.00610 7.06944 7.50253 7.62586 7.82512 8.04043 8.09541 8.48475 8.76972 9.32478 10.81753 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.046951 B = 0.005452 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.221175 B = 5134.944487 C = 5226.817094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.524 4.524 5 H 0.069 0.931 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.351 6.351 13 C 0.446 3.554 14 O -0.507 6.507 15 C 0.136 3.864 16 H 0.115 0.885 17 C -0.117 4.117 18 C -0.153 4.153 19 C 0.520 3.480 20 O -0.536 6.536 21 N -0.600 5.600 22 C 0.083 3.917 23 H 0.038 0.962 24 H 0.015 0.985 25 H 0.100 0.900 26 H 0.268 0.732 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 -5.151 10.842 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.064 0.936 4 C -0.562 4.562 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.266 6.266 13 C 0.287 3.713 14 O -0.397 6.397 15 C 0.030 3.970 16 H 0.133 0.867 17 C -0.155 4.155 18 C -0.193 4.193 19 C 0.308 3.692 20 O -0.413 6.413 21 N -0.335 5.335 22 C -0.058 4.058 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.211 -4.235 11.081 12.067 hybrid contribution 0.226 -0.217 -1.091 1.135 sum 2.436 -4.453 9.990 11.205 Atomic orbital electron populations 1.22165 0.97417 1.00206 1.01466 1.20688 0.91479 0.93903 0.77515 0.93560 1.20969 1.32804 1.13612 0.88793 0.91283 1.24888 0.94851 0.95060 0.99100 1.69879 1.35853 1.22454 1.24431 0.86312 0.79219 0.79546 0.80940 1.19879 1.21000 1.19961 1.86488 1.75516 1.43563 1.21080 1.23296 0.75701 0.86208 0.86122 1.90599 1.47860 1.16726 1.84472 1.21317 0.97844 0.90339 0.87532 0.86729 1.22638 0.97134 1.03009 0.92682 1.22375 1.00834 0.97942 0.98143 1.20836 0.80464 0.85817 0.82062 1.90712 1.59602 1.51468 1.39505 1.47895 1.48338 1.29324 1.07910 1.21804 0.92870 0.89296 1.01866 0.94289 0.96545 0.88186 0.92245 0.87506 0.89262 0.87305 0.87578 0.89963 0.92128 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.33 37.16 0.35 -3.41 16 2 C 0.22 5.55 2.56 -27.88 -0.07 5.48 16 3 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 4 C -0.52 -14.14 8.90 -34.44 -0.31 -14.45 16 5 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 O -0.35 -7.72 9.86 -39.25 -0.39 -8.10 16 13 C 0.45 8.55 6.80 36.01 0.24 8.79 16 14 O -0.51 -11.22 13.69 -18.75 -0.26 -11.48 16 15 C 0.14 1.87 3.82 -67.97 -0.26 1.61 16 16 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.12 -1.23 6.70 -24.91 -0.17 -1.40 16 18 C -0.15 -1.51 6.85 -26.74 -0.18 -1.69 16 19 C 0.52 7.54 8.03 -10.86 -0.09 7.45 16 20 O -0.54 -9.53 17.35 5.55 0.10 -9.43 16 21 N -0.60 -8.82 3.00 -173.80 -0.52 -9.34 16 22 C 0.08 1.19 10.49 59.84 0.63 1.82 16 23 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.10 2.62 6.07 -51.93 -0.32 2.31 16 26 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.04 7.91 -51.93 -0.41 0.63 16 29 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.13 7.53 -51.93 -0.39 0.74 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.37 6.17 -51.93 -0.32 1.05 16 LS Contribution 282.82 15.07 4.26 4.26 Total: -1.00 -31.84 282.82 -5.46 -37.30 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.31 Total: -0.47 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 0.05 Total: 5.80 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.11 Total: -33.31 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.55 Total: -29.01 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.84 -5.46 -37.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821624536.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.823 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds