Wall clock time and date at job start Mon Mar 30 2020 04:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47208 * 2 1 4 4 C 1.50704 * 109.46989 * 240.00626 * 2 1 3 5 5 H 1.08006 * 120.00144 * 240.00071 * 4 2 1 6 6 C 1.37878 * 120.00018 * 59.99735 * 4 2 1 7 7 N 1.31510 * 120.00031 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00036 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47263 * 60.00189 * 8 6 4 10 10 H 1.48503 * 109.47124 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47411 * 300.00095 * 8 6 4 12 12 O 1.45201 * 109.47252 * 120.00683 * 2 1 3 13 13 C 1.34227 * 116.99710 * 269.99464 * 12 2 1 14 14 O 1.20824 * 120.00267 * 0.02562 * 13 12 2 15 15 C 1.50707 * 119.99703 * 179.97438 * 13 12 2 16 16 H 1.09002 * 110.21235 * 39.53149 * 15 13 12 17 17 C 1.54831 * 110.29279 * 277.55725 * 15 13 12 18 18 C 1.54631 * 101.60220 * 215.53072 * 17 15 13 19 19 C 1.51281 * 104.31067 * 24.82962 * 18 17 15 20 20 O 1.21288 * 124.93742 * 163.64367 * 19 18 17 21 21 N 1.34418 * 110.11952 * 343.67722 * 19 18 17 22 22 C 1.46493 * 124.35106 * 179.57371 * 21 19 18 23 23 H 1.08999 * 109.47208 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46782 * 299.99213 * 1 2 3 25 25 H 1.08997 * 109.47605 * 59.99234 * 1 2 3 26 26 H 0.96997 * 120.00639 * 180.02562 * 7 6 4 27 27 H 1.08999 * 111.07622 * 97.45615 * 17 15 13 28 28 H 1.08994 * 111.01534 * 333.58427 * 17 15 13 29 29 H 1.09002 * 110.48855 * 266.08223 * 18 17 15 30 30 H 1.08998 * 110.48570 * 143.57284 * 18 17 15 31 31 H 1.09003 * 109.47025 * 0.02562 * 22 21 19 32 32 H 1.09001 * 109.47220 * 120.02572 * 22 21 19 33 33 H 1.09003 * 109.47400 * 240.02621 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 1.8256 -2.5199 -4.0080 10 1 1.8257 -0.4201 -5.2205 11 1 3.8061 -1.1206 -4.0084 12 8 2.0140 -0.6846 1.1855 13 6 2.2173 0.0638 2.2810 14 8 1.9976 1.2515 2.2506 15 6 2.7184 -0.5776 3.5494 16 1 3.4711 -1.3314 3.3183 17 6 1.5428 -1.2154 4.3294 18 6 1.9657 -0.9581 5.7944 19 6 2.8759 0.2476 5.7146 20 8 3.1960 0.9399 6.6576 21 7 3.2778 0.4404 4.4465 22 6 4.1604 1.5272 4.0152 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.7088 1.1617 -3.4842 27 1 1.4713 -2.2838 4.1260 28 1 0.6033 -0.7125 4.1005 29 1 2.5050 -1.8177 6.1923 30 1 1.0937 -0.7377 6.4100 31 1 4.4306 2.1390 4.8759 32 1 5.0626 1.1077 3.5700 33 1 3.6447 2.1436 3.2788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821624536.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:14 Heat of formation + Delta-G solvation = -140.847533 kcal Electronic energy + Delta-G solvation = -17662.593181 eV Core-core repulsion = 14687.712558 eV Total energy + Delta-G solvation = -2974.880622 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.10696 -40.69621 -37.99724 -37.10511 -35.34693 -33.80944 -31.81686 -29.55634 -27.70931 -27.44427 -24.47069 -23.12583 -21.62950 -20.50692 -19.10390 -18.70505 -17.74394 -17.51499 -17.07450 -16.77051 -16.53188 -15.65680 -14.89348 -14.84139 -14.69979 -14.36126 -14.06461 -13.64625 -13.54664 -13.27998 -13.07288 -13.00510 -12.81924 -12.76254 -12.37411 -12.16903 -12.08129 -11.60223 -11.47634 -11.02972 -10.97952 -10.59670 -9.90999 -8.28182 -6.45293 1.15003 1.34433 1.44626 1.47249 1.55395 1.71171 2.10866 2.41493 3.03087 3.23047 3.39005 3.78342 3.94298 4.04649 4.27737 4.37101 4.51622 4.56806 4.77371 4.77880 4.82182 4.83620 4.97404 5.01527 5.14549 5.23369 5.49046 5.62825 5.91152 5.94101 6.06555 6.59316 6.87154 7.00444 7.26594 8.79027 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.046951 B = 0.005452 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.221175 B = 5134.944487 C = 5226.817094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.219 3.781 3 H 0.005 0.995 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.982 3.018 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.269 1.269 12 O -0.352 6.352 13 C 0.441 3.559 14 O -0.543 6.543 15 C 0.141 3.859 16 H 0.149 0.851 17 C -0.109 4.109 18 C -0.136 4.136 19 C 0.510 3.490 20 O -0.576 6.576 21 N -0.609 5.609 22 C 0.082 3.918 23 H 0.051 0.949 24 H 0.023 0.977 25 H 0.078 0.922 26 H 0.270 0.730 27 H 0.146 0.854 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 -7.731 11.299 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.023 0.977 4 C -0.585 4.585 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.805 3.195 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.193 1.193 12 O -0.267 6.267 13 C 0.284 3.716 14 O -0.434 6.434 15 C 0.036 3.964 16 H 0.166 0.834 17 C -0.147 4.147 18 C -0.175 4.175 19 C 0.300 3.700 20 O -0.456 6.456 21 N -0.343 5.343 22 C -0.059 4.059 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.164 0.836 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.455 -6.833 11.554 13.646 hybrid contribution 0.166 0.668 -1.180 1.366 sum 2.621 -6.165 10.374 12.349 Atomic orbital electron populations 1.21977 0.96640 1.00658 1.00694 1.20346 0.92069 0.91955 0.79059 0.97727 1.21279 1.33436 1.13988 0.89752 0.91007 1.25820 0.94704 0.95615 1.02194 1.70012 1.36636 1.23711 1.25269 0.85244 0.78767 0.78723 0.76766 1.18610 1.20610 1.19349 1.86467 1.75866 1.43375 1.21040 1.24487 0.74458 0.85921 0.86726 1.90597 1.49285 1.18525 1.84988 1.21642 0.99997 0.90026 0.84736 0.83413 1.22784 0.94848 1.04799 0.92235 1.22439 1.00522 0.96671 0.97906 1.21717 0.80336 0.86699 0.81213 1.90690 1.61076 1.53222 1.40596 1.48128 1.48190 1.29449 1.08498 1.21743 0.93376 0.89564 1.01263 0.93038 0.95839 0.90386 0.92061 0.83595 0.90589 0.83610 0.86014 0.89890 0.90230 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.97 9.33 71.98 0.67 -6.30 16 2 C 0.22 11.45 2.56 29.85 0.08 11.52 16 3 H 0.00 0.29 7.16 -2.39 -0.02 0.28 16 4 C -0.55 -29.63 8.90 25.60 0.23 -29.40 16 5 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -51.59 11.32 21.45 0.24 -51.34 16 8 Si 0.98 41.33 29.54 68.60 2.03 43.36 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 12 O -0.35 -15.36 9.86 -51.39 -0.51 -15.87 16 13 C 0.44 16.78 6.80 71.24 0.48 17.27 16 14 O -0.54 -24.78 13.69 21.97 0.30 -24.48 16 15 C 0.14 3.57 3.82 44.82 0.17 3.74 16 16 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 17 C -0.11 -1.89 6.70 31.77 0.21 -1.68 16 18 C -0.14 -2.14 6.85 30.59 0.21 -1.93 16 19 C 0.51 13.86 8.03 87.90 0.71 14.56 16 20 O -0.58 -20.08 17.35 -3.05 -0.05 -20.14 16 21 N -0.61 -17.13 3.00 -822.37 -2.47 -19.60 16 22 C 0.08 2.39 10.49 127.77 1.34 3.73 16 23 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 4.19 6.07 -2.39 -0.01 4.17 16 26 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.57 7.91 -2.39 -0.02 1.55 16 29 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 2.35 7.53 -2.39 -0.02 2.33 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.93 6.17 -2.39 -0.01 1.91 16 Total: -1.00 -71.37 282.82 5.20 -66.18 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.11 Total: 9.06 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 4.55 Total: 12.84 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -2.23 Total: -70.95 kcal Atomic # 8 Polarization: -60.22 SS G_CDS: -0.26 Total: -60.48 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -71.37 5.20 -66.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821624536.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.672 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds