Wall clock time and date at job start Mon Mar 30 2020 04:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 H 1.09001 * 110.21432 * 40.70156 * 15 13 12 17 17 C 1.54487 * 110.24738 * 278.77046 * 15 13 12 18 18 C 1.54618 * 101.76474 * 215.58204 * 17 15 13 19 19 C 1.51283 * 104.20122 * 24.79802 * 18 17 15 20 20 O 1.21274 * 124.94133 * 163.72235 * 19 18 17 21 21 N 1.34556 * 110.13608 * 343.67593 * 19 18 17 22 22 C 1.46503 * 124.43453 * 179.64122 * 21 19 18 23 23 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 24 24 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 25 25 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 1.09000 * 110.96616 * 333.70044 * 17 15 13 28 28 H 1.09001 * 110.96404 * 97.45962 * 17 15 13 29 29 H 1.09010 * 110.48564 * 143.47969 * 18 17 15 30 30 H 1.09006 * 110.48662 * 265.98461 * 18 17 15 31 31 H 1.08997 * 109.47396 * 270.07436 * 22 21 19 32 32 H 1.09001 * 109.46683 * 30.07457 * 22 21 19 33 33 H 1.09005 * 109.47009 * 150.07470 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 1 2.2278 -1.5379 -3.7050 17 6 4.2505 -0.7628 -3.4855 18 6 4.6607 -0.5076 -4.9542 19 6 3.5513 0.3619 -5.5037 20 8 3.6199 1.0127 -6.5247 21 7 2.4769 0.3077 -4.6955 22 6 1.2281 1.0377 -4.9275 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7006 1.1552 3.4844 27 1 4.7049 -0.0285 -2.8203 28 1 4.5079 -1.7767 -3.1790 29 1 5.6147 0.0180 -4.9981 30 1 4.7186 -1.4477 -5.5030 31 1 1.2838 2.0148 -4.4476 32 1 1.0768 1.1674 -5.9992 33 1 0.3944 0.4741 -4.5085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821624537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:15 Heat of formation + Delta-G solvation = -120.608425 kcal Electronic energy + Delta-G solvation = -17663.745429 eV Core-core repulsion = 14689.742440 eV Total energy + Delta-G solvation = -2974.002989 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.81771 -39.19726 -36.56177 -35.55926 -33.38593 -32.78558 -29.91043 -28.30462 -26.61879 -25.40521 -23.15159 -21.62621 -20.08172 -19.27526 -17.58633 -16.95248 -16.48065 -16.04508 -15.65876 -15.13468 -14.80310 -14.20659 -13.91787 -13.57527 -13.20684 -12.78175 -12.55072 -12.38283 -12.19517 -11.88372 -11.81618 -11.27110 -11.21715 -11.13663 -10.92463 -10.44817 -10.35545 -9.99128 -9.80864 -9.66056 -8.99908 -8.70992 -8.57269 -6.25922 -4.33454 2.48652 2.67309 2.89415 3.18874 3.25984 3.30184 3.50634 4.21298 4.26108 4.37857 4.82306 4.85372 5.07449 5.23853 5.32037 5.48720 5.56378 5.63006 5.74896 5.85798 5.95629 6.35834 6.52657 6.78172 6.79992 7.01048 7.04639 7.50481 7.62396 7.82564 8.03902 8.09491 8.48878 8.77565 9.32512 10.81511 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.044693 B = 0.005675 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.347499 B = 4933.081657 C = 5337.597505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.351 6.351 13 C 0.445 3.555 14 O -0.507 6.507 15 C 0.136 3.864 16 H 0.114 0.886 17 C -0.118 4.118 18 C -0.153 4.153 19 C 0.520 3.480 20 O -0.534 6.534 21 N -0.602 5.602 22 C 0.098 3.902 23 H 0.100 0.900 24 H 0.015 0.985 25 H 0.037 0.963 26 H 0.266 0.734 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -5.028 -10.475 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.560 4.560 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.739 3.261 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.267 6.267 13 C 0.285 3.715 14 O -0.396 6.396 15 C 0.030 3.970 16 H 0.132 0.868 17 C -0.155 4.155 18 C -0.193 4.193 19 C 0.308 3.692 20 O -0.411 6.411 21 N -0.337 5.337 22 C -0.043 4.043 23 H 0.119 0.881 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.359 -4.164 -10.809 12.061 hybrid contribution -0.012 -0.218 1.064 1.086 sum 3.347 -4.383 -9.746 11.198 Atomic orbital electron populations 1.22169 0.97451 1.00177 1.01465 1.20699 0.91433 0.93966 0.77571 0.93529 1.21046 1.32551 1.13624 0.88753 0.91144 1.24896 0.94860 0.95084 0.99140 1.69899 1.35943 1.22597 1.24202 0.86208 0.78645 0.79500 0.81722 1.19420 1.20721 1.20687 1.86485 1.75488 1.43516 1.21199 1.23300 0.75609 0.86251 0.86322 1.90629 1.47882 1.16624 1.84437 1.21268 0.98476 0.93954 0.83283 0.86802 1.22584 0.91063 1.05279 0.96618 1.22377 0.99025 1.01540 0.96317 1.20868 0.83842 0.81366 0.83093 1.90709 1.81599 1.44174 1.24645 1.47968 1.15537 1.46706 1.23485 1.21603 0.83834 0.97199 1.01707 0.88133 0.96594 0.94339 0.92364 0.89138 0.87481 0.87554 0.87302 0.91270 0.90815 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.32 37.16 0.35 -3.42 16 2 C 0.22 5.53 2.56 -27.88 -0.07 5.46 16 3 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 4 C -0.52 -14.05 8.90 -34.44 -0.31 -14.36 16 5 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.62 11.31 55.43 0.63 -23.99 16 8 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 O -0.35 -7.72 9.86 -39.24 -0.39 -8.11 16 13 C 0.44 8.53 6.81 36.00 0.25 8.77 16 14 O -0.51 -11.25 14.23 -18.75 -0.27 -11.52 16 15 C 0.14 1.87 3.82 -68.16 -0.26 1.61 16 16 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.12 -1.28 6.67 -25.10 -0.17 -1.45 16 18 C -0.15 -1.53 6.86 -26.75 -0.18 -1.71 16 19 C 0.52 7.55 8.03 -10.80 -0.09 7.46 16 20 O -0.53 -9.52 17.60 5.56 0.10 -9.42 16 21 N -0.60 -8.77 3.01 -173.97 -0.52 -9.30 16 22 C 0.10 1.38 9.59 59.85 0.57 1.95 16 23 H 0.10 2.64 6.06 -51.93 -0.31 2.33 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.09 1.10 7.91 -51.93 -0.41 0.69 16 28 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.11 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.09 7.49 -51.93 -0.39 0.70 16 32 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 284.40 15.07 4.29 4.29 Total: -1.00 -31.98 284.40 -5.59 -37.57 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.40 Total: -0.79 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 0.00 Total: 5.89 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.10 Total: -33.29 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.56 Total: -29.05 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.98 -5.59 -37.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821624537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.034 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds