Wall clock time and date at job start Mon Mar 30 2020 04:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 H 1.09001 * 110.21432 * 40.70156 * 15 13 12 17 17 C 1.54487 * 110.24738 * 278.77046 * 15 13 12 18 18 C 1.54618 * 101.76474 * 215.58204 * 17 15 13 19 19 C 1.51283 * 104.20122 * 24.79802 * 18 17 15 20 20 O 1.21274 * 124.94133 * 163.72235 * 19 18 17 21 21 N 1.34556 * 110.13608 * 343.67593 * 19 18 17 22 22 C 1.46503 * 124.43453 * 179.64122 * 21 19 18 23 23 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 24 24 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 25 25 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 1.09000 * 110.96616 * 333.70044 * 17 15 13 28 28 H 1.09001 * 110.96404 * 97.45962 * 17 15 13 29 29 H 1.09010 * 110.48564 * 143.47969 * 18 17 15 30 30 H 1.09006 * 110.48662 * 265.98461 * 18 17 15 31 31 H 1.08997 * 109.47396 * 270.07436 * 22 21 19 32 32 H 1.09001 * 109.46683 * 30.07457 * 22 21 19 33 33 H 1.09005 * 109.47009 * 150.07470 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 1 2.2278 -1.5379 -3.7050 17 6 4.2505 -0.7628 -3.4855 18 6 4.6607 -0.5076 -4.9542 19 6 3.5513 0.3619 -5.5037 20 8 3.6199 1.0127 -6.5247 21 7 2.4769 0.3077 -4.6955 22 6 1.2281 1.0377 -4.9275 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7006 1.1552 3.4844 27 1 4.7049 -0.0285 -2.8203 28 1 4.5079 -1.7767 -3.1790 29 1 5.6147 0.0180 -4.9981 30 1 4.7186 -1.4477 -5.5030 31 1 1.2838 2.0148 -4.4476 32 1 1.0768 1.1674 -5.9992 33 1 0.3944 0.4741 -4.5085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821624537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:15 Heat of formation + Delta-G solvation = -141.408278 kcal Electronic energy + Delta-G solvation = -17664.647378 eV Core-core repulsion = 14689.742440 eV Total energy + Delta-G solvation = -2974.904938 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.09707 -40.69171 -37.99625 -37.11115 -35.34646 -33.81755 -31.81542 -29.56360 -27.70700 -27.45295 -24.50794 -23.05515 -21.68654 -20.49990 -19.08500 -18.64226 -17.78451 -17.59882 -17.04104 -16.71736 -16.52175 -15.62437 -14.90301 -14.88086 -14.74956 -14.24662 -13.99104 -13.77119 -13.51993 -13.27265 -13.14222 -12.98562 -12.84916 -12.80863 -12.39039 -12.13356 -12.08586 -11.61559 -11.45976 -11.01507 -10.96504 -10.60363 -9.92982 -8.28253 -6.44987 1.17104 1.32869 1.44713 1.45338 1.58573 1.70948 2.10780 2.41625 3.03344 3.23161 3.39576 3.78658 3.94172 4.03589 4.25024 4.35660 4.51562 4.56016 4.76011 4.77120 4.81832 4.82667 4.98041 5.01340 5.13535 5.23650 5.49608 5.62093 5.90907 5.92948 6.05977 6.60290 6.87403 7.00267 7.26995 8.79542 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.044693 B = 0.005675 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.347499 B = 4933.081657 C = 5337.597505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.005 0.995 4 C -0.543 4.543 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.983 3.017 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.274 1.274 12 O -0.352 6.352 13 C 0.440 3.560 14 O -0.544 6.544 15 C 0.143 3.857 16 H 0.152 0.848 17 C -0.112 4.112 18 C -0.136 4.136 19 C 0.510 3.490 20 O -0.574 6.574 21 N -0.610 5.610 22 C 0.097 3.903 23 H 0.078 0.922 24 H 0.022 0.978 25 H 0.049 0.951 26 H 0.270 0.730 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.120 0.880 30 H 0.147 0.853 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 -7.447 -10.628 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.023 0.977 4 C -0.581 4.581 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.806 3.194 9 H -0.182 1.182 10 H -0.205 1.205 11 H -0.200 1.200 12 O -0.267 6.267 13 C 0.283 3.717 14 O -0.434 6.434 15 C 0.037 3.963 16 H 0.169 0.831 17 C -0.149 4.149 18 C -0.175 4.175 19 C 0.300 3.700 20 O -0.454 6.454 21 N -0.344 5.344 22 C -0.045 4.045 23 H 0.097 0.903 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.163 0.837 29 H 0.138 0.862 30 H 0.165 0.835 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.548 -6.601 -10.975 13.590 hybrid contribution -0.400 0.611 1.051 1.280 sum 4.148 -5.990 -9.923 12.310 Atomic orbital electron populations 1.21989 0.96795 1.00545 1.00737 1.20355 0.91942 0.92044 0.79145 0.97672 1.21342 1.33143 1.13970 0.89641 0.90819 1.25837 0.94721 0.95655 1.02266 1.70027 1.36750 1.23890 1.25123 0.85131 0.78284 0.78503 0.77486 1.18219 1.20470 1.19981 1.86465 1.75808 1.43311 1.21153 1.24494 0.74295 0.85960 0.86940 1.90624 1.49397 1.18461 1.84936 1.21591 1.00819 0.94171 0.79688 0.83096 1.22717 0.88183 1.07006 0.97020 1.22436 0.97440 1.02298 0.95319 1.21720 0.84606 0.81171 0.82456 1.90687 1.82294 1.45963 1.26468 1.48196 1.15734 1.46807 1.23661 1.21575 0.84523 0.96246 1.02176 0.90295 0.95857 0.93236 0.92102 0.90920 0.83692 0.86159 0.83492 0.93827 0.89778 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.06 9.32 71.98 0.67 -6.39 16 2 C 0.22 11.41 2.56 29.85 0.08 11.48 16 3 H 0.01 0.33 7.16 -2.38 -0.02 0.31 16 4 C -0.54 -29.29 8.90 25.60 0.23 -29.06 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -51.66 11.31 21.45 0.24 -51.42 16 8 Si 0.98 41.21 29.54 68.60 2.03 43.24 16 9 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 10 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 O -0.35 -15.32 9.86 -51.37 -0.51 -15.82 16 13 C 0.44 16.72 6.81 71.23 0.49 17.20 16 14 O -0.54 -24.82 14.23 21.95 0.31 -24.51 16 15 C 0.14 3.58 3.82 44.70 0.17 3.75 16 16 H 0.15 2.78 8.14 -2.39 -0.02 2.76 16 17 C -0.11 -2.04 6.67 31.65 0.21 -1.83 16 18 C -0.14 -2.20 6.86 30.58 0.21 -1.99 16 19 C 0.51 13.90 8.03 87.88 0.71 14.61 16 20 O -0.57 -20.06 17.60 -3.01 -0.05 -20.11 16 21 N -0.61 -16.97 3.01 -822.85 -2.48 -19.45 16 22 C 0.10 2.72 9.59 127.77 1.23 3.95 16 23 H 0.08 4.25 6.06 -2.38 -0.01 4.24 16 24 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 27 H 0.07 1.63 7.91 -2.39 -0.02 1.61 16 28 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.15 1.36 8.14 -2.38 -0.02 1.35 16 31 H 0.04 1.43 7.49 -2.39 -0.02 1.42 16 32 H 0.08 2.15 7.93 -2.39 -0.02 2.13 16 33 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -71.43 284.40 5.08 -66.35 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.10 Total: 8.76 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.43 Total: 12.96 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -2.23 Total: -70.87 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -0.25 Total: -60.44 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -71.43 5.08 -66.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821624537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.057 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds