Wall clock time and date at job start Mon Mar 30 2020 03:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31744 * 123.76919 * 2 1 4 4 N 1.27570 * 118.27182 * 179.97438 * 3 2 1 5 5 S 1.56517 * 109.22531 * 0.02562 * 4 3 2 6 6 C 1.35347 * 123.76719 * 179.97438 * 2 1 3 7 7 C 1.50706 * 127.92103 * 0.03654 * 6 2 1 8 8 N 1.46904 * 109.47039 * 89.97423 * 7 6 2 9 9 C 1.46903 * 110.99670 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47130 * 35.00503 * 9 8 7 11 11 C 1.53002 * 109.46935 * 274.99719 * 9 8 7 12 12 C 1.53002 * 109.46686 * 155.00484 * 9 8 7 13 13 C 1.50705 * 109.46926 * 294.99651 * 12 9 8 14 14 H 1.07999 * 119.99630 * 0.02562 * 13 12 9 15 15 C 1.37873 * 119.99931 * 180.02562 * 13 12 9 16 16 N 1.31515 * 119.99827 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00021 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47001 * 90.00218 * 17 15 13 19 19 H 1.48499 * 109.46888 * 209.99858 * 17 15 13 20 20 H 1.48501 * 109.46903 * 329.99953 * 17 15 13 21 21 H 1.08995 * 109.47247 * 270.04327 * 1 2 3 22 22 H 1.09004 * 109.46753 * 30.03795 * 1 2 3 23 23 H 1.08997 * 109.47073 * 150.03723 * 1 2 3 24 24 H 1.08997 * 109.47004 * 209.97704 * 7 6 2 25 25 H 1.08996 * 109.46899 * 329.97799 * 7 6 2 26 26 H 1.00898 * 110.99929 * 56.04901 * 8 7 6 27 27 H 1.08999 * 109.46695 * 180.02562 * 11 9 8 28 28 H 1.08994 * 109.47410 * 300.00646 * 11 9 8 29 29 H 1.09002 * 109.47031 * 60.00314 * 11 9 8 30 30 H 1.08996 * 109.47405 * 54.99397 * 12 9 8 31 31 H 1.08998 * 109.46976 * 175.00381 * 12 9 8 32 32 H 0.97008 * 119.99748 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2393 1.0952 0.0000 4 7 3.5091 0.9730 0.0005 5 16 3.8806 -0.5475 0.0004 6 6 2.2593 -1.1251 0.0005 7 6 1.7858 -2.5559 0.0004 8 7 1.6321 -3.0207 -1.3847 9 6 1.1701 -4.4146 -1.4239 10 1 0.4891 -4.5952 -0.5924 11 6 2.3728 -5.3538 -1.3116 12 6 0.4425 -4.6737 -2.7447 13 6 -0.8097 -3.8369 -2.8008 14 1 -1.0610 -3.1853 -1.9770 15 6 -1.6344 -3.9034 -3.9037 16 7 -2.7273 -3.1735 -3.9524 17 14 -1.1999 -5.0310 -5.3282 18 1 -1.8061 -6.3679 -5.1039 19 1 -1.7244 -4.4556 -6.5927 20 1 0.2761 -5.1659 -5.4204 21 1 -0.3633 0.0008 1.0276 22 1 -0.3633 0.8897 -0.5145 23 1 -0.3633 -0.8903 -0.5132 24 1 2.5165 -3.1804 0.5143 25 1 0.8267 -2.6212 0.5140 26 1 2.4919 -2.9097 -1.9008 27 1 2.0300 -6.3881 -1.3412 28 1 3.0538 -5.1731 -2.1432 29 1 2.8913 -5.1692 -0.3707 30 1 1.0944 -4.4082 -3.5769 31 1 0.1776 -5.7288 -2.8127 32 1 -3.3077 -3.2206 -4.7283 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189466.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:05 Heat of formation + Delta-G solvation = 60.148922 kcal Electronic energy + Delta-G solvation = -15098.334731 eV Core-core repulsion = 12607.215592 eV Total energy + Delta-G solvation = -2491.119140 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.76938 -37.18753 -33.92915 -32.46869 -30.90387 -28.11254 -27.60491 -26.59388 -24.12507 -22.56769 -20.31529 -19.72835 -18.47227 -16.63087 -15.87592 -15.54954 -14.82348 -14.28261 -14.14002 -13.72223 -13.06775 -12.77493 -12.72921 -12.55327 -12.29613 -12.01895 -11.90247 -11.76055 -11.33568 -11.07823 -10.76595 -10.42544 -10.02154 -9.81852 -9.65037 -9.57898 -9.35637 -9.07750 -8.45227 -7.84537 -5.94128 -3.88262 0.32684 1.18931 1.79850 2.37007 3.33544 3.42204 3.44095 4.23085 4.51997 4.58706 4.80356 4.95230 5.40499 5.46561 5.53266 5.60390 5.68315 5.74072 5.81010 5.82999 6.02439 6.21356 6.37924 6.46924 6.68505 7.06915 7.19902 7.62145 7.77876 7.89759 7.92570 8.67366 9.15667 9.69060 11.19704 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.006520 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.692487 B = 4293.385656 C = 4871.457113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.043 3.957 3 N -0.240 5.240 4 N -0.295 5.295 5 S 0.390 5.610 6 C -0.238 4.238 7 C 0.141 3.859 8 N -0.656 5.656 9 C 0.099 3.901 10 H 0.074 0.926 11 C -0.185 4.185 12 C -0.004 4.004 13 C -0.491 4.491 14 H 0.077 0.923 15 C 0.062 3.938 16 N -0.907 5.907 17 Si 0.874 3.126 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.269 1.269 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.102 0.898 24 H 0.040 0.960 25 H 0.097 0.903 26 H 0.332 0.668 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.016 0.984 31 H 0.014 0.986 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.737 0.166 9.127 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 N -0.108 5.108 4 N -0.273 5.273 5 S 0.526 5.474 6 C -0.376 4.376 7 C 0.010 3.990 8 N -0.287 5.287 9 C -0.010 4.010 10 H 0.093 0.907 11 C -0.244 4.244 12 C -0.042 4.042 13 C -0.529 4.529 14 H 0.095 0.905 15 C -0.138 4.138 16 N -0.547 5.547 17 Si 0.702 3.298 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.193 1.193 21 H 0.094 0.906 22 H 0.098 0.902 23 H 0.120 0.880 24 H 0.058 0.942 25 H 0.116 0.884 26 H 0.150 0.850 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.564 1.601 8.946 15.506 hybrid contribution -0.425 -1.568 -0.697 1.768 sum 12.139 0.033 8.249 14.677 Atomic orbital electron populations 1.20392 0.84398 1.05602 1.03020 1.22296 1.00549 0.86234 1.01072 1.71191 0.96676 1.28122 1.14833 1.78868 1.10652 1.14522 1.23274 1.81268 1.10408 1.02387 1.53313 1.27017 0.98236 1.02673 1.09688 1.20252 1.00735 0.85310 0.92738 1.60539 1.35893 1.22759 1.09483 1.21605 0.94107 0.83881 1.01432 0.90737 1.22613 0.99862 1.01561 1.00373 1.19611 0.96409 0.96207 0.91969 1.21000 1.03728 1.23665 1.04534 0.90487 1.25005 0.95063 0.95659 0.98092 1.69904 1.13592 1.41118 1.30115 0.86889 0.79003 0.81226 0.82707 1.20636 1.21655 1.19342 0.90606 0.90247 0.87983 0.94188 0.88447 0.84991 0.92144 0.92898 0.93904 0.96573 0.96779 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.01 36.01 0.36 -0.70 16 2 C 0.04 0.66 6.89 -83.66 -0.58 0.09 16 3 N -0.24 -4.01 11.68 32.45 0.38 -3.63 16 4 N -0.29 -4.59 12.54 60.35 0.76 -3.83 16 5 S 0.39 4.77 23.40 -107.50 -2.52 2.25 16 6 C -0.24 -3.28 6.18 -35.34 -0.22 -3.50 16 7 C 0.14 1.89 5.59 -4.97 -0.03 1.86 16 8 N -0.66 -10.76 5.95 -107.99 -0.64 -11.40 16 9 C 0.10 1.71 2.53 -67.71 -0.17 1.54 16 10 H 0.07 1.31 7.80 -51.93 -0.40 0.90 16 11 C -0.18 -2.55 9.16 37.16 0.34 -2.21 16 12 C 0.00 -0.09 3.72 -27.88 -0.10 -0.20 16 13 C -0.49 -13.27 9.39 -34.44 -0.32 -13.60 16 14 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.06 1.75 5.47 -17.82 -0.10 1.66 16 16 N -0.91 -27.60 13.96 55.43 0.77 -26.83 16 17 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 21 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 23 H 0.10 1.66 7.67 -51.93 -0.40 1.26 16 24 H 0.04 0.45 7.44 -51.93 -0.39 0.06 16 25 H 0.10 1.32 7.68 -51.93 -0.40 0.92 16 26 H 0.33 5.09 8.46 -39.29 -0.33 4.76 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 30 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 284.83 15.07 4.29 4.29 Total: -1.00 -30.97 284.83 -6.79 -37.76 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.35 Total: -0.37 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.82 Total: -15.05 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 1.27 Total: -45.69 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -2.52 Total: 2.25 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.97 -6.79 -37.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189466.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.914 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds