Wall clock time and date at job start Mon Mar 30 2020 03:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31744 * 123.76919 * 2 1 4 4 N 1.27570 * 118.27182 * 179.97438 * 3 2 1 5 5 S 1.56517 * 109.22531 * 0.02562 * 4 3 2 6 6 C 1.35347 * 123.76719 * 179.97438 * 2 1 3 7 7 C 1.50706 * 127.92103 * 0.03654 * 6 2 1 8 8 N 1.46904 * 109.47039 * 89.97423 * 7 6 2 9 9 C 1.46903 * 110.99670 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47130 * 35.00503 * 9 8 7 11 11 C 1.53002 * 109.46935 * 274.99719 * 9 8 7 12 12 C 1.53002 * 109.46686 * 155.00484 * 9 8 7 13 13 C 1.50705 * 109.46926 * 294.99651 * 12 9 8 14 14 H 1.07999 * 119.99630 * 0.02562 * 13 12 9 15 15 C 1.37873 * 119.99931 * 180.02562 * 13 12 9 16 16 N 1.31515 * 119.99827 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00021 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47001 * 90.00218 * 17 15 13 19 19 H 1.48499 * 109.46888 * 209.99858 * 17 15 13 20 20 H 1.48501 * 109.46903 * 329.99953 * 17 15 13 21 21 H 1.08995 * 109.47247 * 270.04327 * 1 2 3 22 22 H 1.09004 * 109.46753 * 30.03795 * 1 2 3 23 23 H 1.08997 * 109.47073 * 150.03723 * 1 2 3 24 24 H 1.08997 * 109.47004 * 209.97704 * 7 6 2 25 25 H 1.08996 * 109.46899 * 329.97799 * 7 6 2 26 26 H 1.00898 * 110.99929 * 56.04901 * 8 7 6 27 27 H 1.08999 * 109.46695 * 180.02562 * 11 9 8 28 28 H 1.08994 * 109.47410 * 300.00646 * 11 9 8 29 29 H 1.09002 * 109.47031 * 60.00314 * 11 9 8 30 30 H 1.08996 * 109.47405 * 54.99397 * 12 9 8 31 31 H 1.08998 * 109.46976 * 175.00381 * 12 9 8 32 32 H 0.97008 * 119.99748 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2393 1.0952 0.0000 4 7 3.5091 0.9730 0.0005 5 16 3.8806 -0.5475 0.0004 6 6 2.2593 -1.1251 0.0005 7 6 1.7858 -2.5559 0.0004 8 7 1.6321 -3.0207 -1.3847 9 6 1.1701 -4.4146 -1.4239 10 1 0.4891 -4.5952 -0.5924 11 6 2.3728 -5.3538 -1.3116 12 6 0.4425 -4.6737 -2.7447 13 6 -0.8097 -3.8369 -2.8008 14 1 -1.0610 -3.1853 -1.9770 15 6 -1.6344 -3.9034 -3.9037 16 7 -2.7273 -3.1735 -3.9524 17 14 -1.1999 -5.0310 -5.3282 18 1 -1.8061 -6.3679 -5.1039 19 1 -1.7244 -4.4556 -6.5927 20 1 0.2761 -5.1659 -5.4204 21 1 -0.3633 0.0008 1.0276 22 1 -0.3633 0.8897 -0.5145 23 1 -0.3633 -0.8903 -0.5132 24 1 2.5165 -3.1804 0.5143 25 1 0.8267 -2.6212 0.5140 26 1 2.4919 -2.9097 -1.9008 27 1 2.0300 -6.3881 -1.3412 28 1 3.0538 -5.1731 -2.1432 29 1 2.8913 -5.1692 -0.3707 30 1 1.0944 -4.4082 -3.5769 31 1 0.1776 -5.7288 -2.8127 32 1 -3.3077 -3.2206 -4.7283 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189466.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:05 Heat of formation + Delta-G solvation = 37.964747 kcal Electronic energy + Delta-G solvation = -15099.296709 eV Core-core repulsion = 12607.215592 eV Total energy + Delta-G solvation = -2492.081118 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.91305 -38.49062 -35.31169 -34.31983 -32.30513 -29.73281 -28.81840 -27.76863 -25.35367 -24.28816 -21.58392 -21.09518 -19.55146 -18.71691 -17.05841 -16.86247 -16.11903 -16.03671 -15.32781 -15.08131 -14.51810 -14.21752 -13.96077 -13.84046 -13.68914 -13.36811 -13.27713 -13.12133 -12.75922 -12.40391 -12.17766 -12.10691 -11.58526 -11.41878 -11.10794 -11.09655 -10.66173 -10.61211 -10.47668 -9.05513 -8.12378 -6.09874 -0.78086 0.13694 0.71754 1.19623 1.39538 1.42372 1.51973 2.46129 3.08677 3.21612 3.43303 3.72159 3.83728 4.23639 4.40836 4.47172 4.55886 4.62312 4.70509 4.73232 4.84872 5.01691 5.21310 5.25535 5.26901 5.34415 5.56866 5.81697 6.28479 6.51926 6.65904 6.77297 6.98860 7.50738 9.04524 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.006520 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.692487 B = 4293.385656 C = 4871.457113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.027 3.973 3 N -0.272 5.272 4 N -0.331 5.331 5 S 0.486 5.514 6 C -0.250 4.250 7 C 0.147 3.853 8 N -0.682 5.682 9 C 0.105 3.895 10 H 0.067 0.933 11 C -0.174 4.174 12 C -0.006 4.006 13 C -0.484 4.484 14 H 0.042 0.958 15 C -0.005 4.005 16 N -0.959 5.959 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.296 1.296 20 H -0.249 1.249 21 H 0.097 0.903 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.339 0.661 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.013 0.987 31 H 0.020 0.980 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.267 -1.566 9.498 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.119 4.119 3 N -0.139 5.139 4 N -0.310 5.310 5 S 0.622 5.378 6 C -0.388 4.388 7 C 0.016 3.984 8 N -0.314 5.314 9 C -0.005 4.005 10 H 0.086 0.914 11 C -0.233 4.233 12 C -0.044 4.044 13 C -0.523 4.523 14 H 0.060 0.940 15 C -0.200 4.200 16 N -0.602 5.602 17 Si 0.765 3.235 18 H -0.196 1.196 19 H -0.223 1.223 20 H -0.173 1.173 21 H 0.115 0.885 22 H 0.092 0.908 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.158 0.842 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.032 0.968 31 H 0.038 0.962 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.124 -0.134 9.335 17.773 hybrid contribution -1.157 -1.016 -0.738 1.708 sum 13.967 -1.150 8.596 16.440 Atomic orbital electron populations 1.20289 0.84555 1.03995 1.03981 1.22434 1.00877 0.86829 1.01744 1.71232 0.97175 1.29046 1.16408 1.78560 1.10455 1.17519 1.24473 1.80826 1.07635 0.99331 1.50053 1.27182 0.99666 1.02547 1.09414 1.20230 1.01508 0.85336 0.91294 1.60340 1.36777 1.22550 1.11700 1.21362 0.95397 0.85476 0.98220 0.91439 1.22470 0.98163 1.00532 1.02153 1.19608 0.94526 0.95312 0.94912 1.21356 1.05259 1.22741 1.02945 0.93989 1.25914 0.95097 0.97596 1.01368 1.70079 1.15264 1.43698 1.31110 0.85820 0.79746 0.79227 0.78699 1.19589 1.22268 1.17286 0.88467 0.90811 0.90425 0.90799 0.89195 0.84249 0.91718 0.92299 0.91133 0.96822 0.96170 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.01 10.01 71.24 0.71 -1.29 16 2 C 0.03 0.81 6.89 41.90 0.29 1.10 16 3 N -0.27 -9.01 11.68 -51.24 -0.60 -9.61 16 4 N -0.33 -9.93 12.54 37.02 0.46 -9.46 16 5 S 0.49 10.58 23.40 -56.49 -1.32 9.26 16 6 C -0.25 -6.48 6.18 25.02 0.15 -6.32 16 7 C 0.15 3.63 5.59 85.56 0.48 4.11 16 8 N -0.68 -21.20 5.95 -495.56 -2.95 -24.15 16 9 C 0.10 3.41 2.53 44.92 0.11 3.52 16 10 H 0.07 2.27 7.80 -2.39 -0.02 2.25 16 11 C -0.17 -4.09 9.16 71.98 0.66 -3.43 16 12 C -0.01 -0.25 3.72 29.85 0.11 -0.13 16 13 C -0.48 -26.53 9.39 25.60 0.24 -26.29 16 14 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 15 C -0.01 -0.30 5.47 84.65 0.46 0.16 16 16 N -0.96 -60.16 13.96 21.45 0.30 -59.86 16 17 Si 0.94 44.16 27.47 68.60 1.88 46.04 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 20 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 21 H 0.10 2.35 8.14 -2.39 -0.02 2.34 16 22 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 23 H 0.08 2.66 7.67 -2.39 -0.02 2.64 16 24 H 0.07 1.35 7.44 -2.39 -0.02 1.33 16 25 H 0.09 2.36 7.68 -2.39 -0.02 2.34 16 26 H 0.34 9.52 8.46 -89.70 -0.76 8.76 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.07 1.29 7.45 -2.39 -0.02 1.27 16 30 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 31 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 32 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -68.31 284.83 1.31 -67.00 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.31 Total: 9.35 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 3.22 Total: -28.57 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -2.78 Total: -103.09 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal Atomic # 16 Polarization: 10.58 SS G_CDS: -1.32 Total: 9.26 kcal Total: -68.31 1.31 -67.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189466.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.969 kcal (2) G-P(sol) polarization free energy of solvation -68.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds