Wall clock time and date at job start Mon Mar 30 2020 03:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31745 * 123.76267 * 2 1 4 4 N 1.27577 * 118.27018 * 180.30350 * 3 2 1 5 5 S 1.56509 * 109.22200 * 359.73124 * 4 3 2 6 6 C 1.35339 * 123.76873 * 179.80286 * 2 1 3 7 7 C 1.50693 * 127.92427 * 0.02681 * 6 2 1 8 8 N 1.46908 * 109.47347 * 89.69982 * 7 6 2 9 9 C 1.46894 * 110.99955 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47779 * 324.99869 * 9 8 7 11 11 C 1.52998 * 109.47018 * 85.00186 * 9 8 7 12 12 C 1.53002 * 109.47229 * 204.99899 * 9 8 7 13 13 C 1.50706 * 109.47153 * 64.99752 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 H 1.09003 * 109.46684 * 270.19189 * 1 2 3 22 22 H 1.08997 * 109.46938 * 30.19462 * 1 2 3 23 23 H 1.08999 * 109.46682 * 150.19425 * 1 2 3 24 24 H 1.09002 * 109.47128 * 329.70092 * 7 6 2 25 25 H 1.09003 * 109.47028 * 209.69688 * 7 6 2 26 26 H 1.00893 * 111.00020 * 303.95580 * 8 7 6 27 27 H 1.09001 * 109.46923 * 299.99707 * 11 9 8 28 28 H 1.08995 * 109.47190 * 60.00037 * 11 9 8 29 29 H 1.09007 * 109.46878 * 179.97438 * 11 9 8 30 30 H 1.09004 * 109.47178 * 305.00542 * 12 9 8 31 31 H 1.08993 * 109.47411 * 185.00225 * 12 9 8 32 32 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0953 0.0000 4 7 3.5091 0.9732 -0.0060 5 16 3.8806 -0.5472 -0.0051 6 6 2.2593 -1.1251 0.0039 7 6 1.7860 -2.5557 0.0082 8 7 1.6258 -3.0228 -1.3754 9 6 1.1650 -4.4171 -1.4102 10 1 1.6075 -4.9671 -0.5797 11 6 -0.3599 -4.4534 -1.2909 12 6 1.5885 -5.0614 -2.7318 13 6 3.0924 -5.1368 -2.7946 14 1 3.6865 -4.7630 -1.9739 15 6 3.7097 -5.6829 -3.8998 16 7 2.9861 -6.1430 -4.8970 17 14 5.5737 -5.7771 -3.9774 18 1 6.1059 -4.5417 -4.6066 19 1 6.1204 -5.9075 -2.6029 20 1 5.9767 -6.9567 -4.7844 21 1 -0.3633 0.0034 1.0277 22 1 -0.3633 0.8882 -0.5168 23 1 -0.3633 -0.8917 -0.5108 24 1 0.8293 -2.6203 0.5266 25 1 2.5192 -3.1794 0.5196 26 1 0.9996 -2.4217 -1.8897 27 1 -0.6617 -3.9944 -0.3494 28 1 -0.8025 -3.9036 -2.1215 29 1 -0.7019 -5.4881 -1.3173 30 1 1.2199 -4.4608 -3.5634 31 1 1.1713 -6.0662 -2.7963 32 1 2.0181 -6.0944 -4.8567 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:06 Heat of formation + Delta-G solvation = 51.836213 kcal Electronic energy + Delta-G solvation = -15058.483777 eV Core-core repulsion = 12567.004172 eV Total energy + Delta-G solvation = -2491.479606 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.84068 -37.20616 -34.10899 -32.72375 -30.79950 -27.97705 -27.00521 -26.70849 -24.09235 -22.80231 -20.35221 -19.98489 -18.56235 -16.78996 -15.93044 -15.30281 -14.97935 -14.52185 -13.79250 -13.62382 -13.19541 -13.12771 -12.97957 -12.75740 -12.38302 -12.08403 -11.83436 -11.37964 -11.19405 -11.09922 -10.76346 -10.38502 -10.07087 -9.99344 -9.77807 -9.53538 -9.45653 -8.51347 -8.23999 -7.83968 -6.24365 -3.90247 0.31876 1.23385 1.83142 2.23765 3.49382 3.52515 3.67789 4.09982 4.52549 4.62718 4.72135 4.88406 5.25850 5.37672 5.44009 5.49148 5.53608 5.57393 5.68359 5.71234 5.80903 5.93707 6.21367 6.40959 6.74885 7.20982 7.30571 7.68716 7.80802 7.84494 8.35138 8.61598 9.00637 9.78655 11.16128 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023284 B = 0.007048 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.267067 B = 3971.941554 C = 4904.899404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.015 3.985 3 N -0.246 5.246 4 N -0.305 5.305 5 S 0.452 5.548 6 C -0.242 4.242 7 C 0.139 3.861 8 N -0.658 5.658 9 C 0.097 3.903 10 H 0.069 0.931 11 C -0.183 4.183 12 C 0.020 3.980 13 C -0.572 4.572 14 H 0.052 0.948 15 C 0.008 3.992 16 N -0.923 5.923 17 Si 1.068 2.932 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.287 1.287 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.334 0.666 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.007 0.993 31 H 0.010 0.990 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 8.368 11.719 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.131 4.131 3 N -0.112 5.112 4 N -0.284 5.284 5 S 0.588 5.412 6 C -0.380 4.380 7 C 0.007 3.993 8 N -0.289 5.289 9 C -0.012 4.012 10 H 0.088 0.912 11 C -0.242 4.242 12 C -0.018 4.018 13 C -0.611 4.611 14 H 0.070 0.930 15 C -0.194 4.194 16 N -0.560 5.560 17 Si 0.898 3.102 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.213 1.213 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.107 0.893 26 H 0.152 0.848 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.823 8.824 10.708 13.900 hybrid contribution -3.664 0.083 1.136 3.837 sum -4.487 8.907 11.845 15.484 Atomic orbital electron populations 1.20230 0.85461 1.03816 1.03190 1.22186 1.00052 0.86899 1.03949 1.71183 0.96983 1.27831 1.15239 1.78717 1.10352 1.15937 1.23395 1.81598 1.09367 1.00041 1.50145 1.27041 0.99549 1.02225 1.09227 1.20230 0.99724 0.86306 0.92997 1.60615 1.55160 1.03624 1.09468 1.21673 0.90269 0.87508 1.01755 0.91247 1.22590 0.99279 1.02130 1.00176 1.19239 0.97784 0.93978 0.90750 1.21935 0.91175 1.42090 1.05865 0.92962 1.25761 1.06723 0.94089 0.92818 1.70763 1.07659 1.44850 1.32758 0.83550 0.74765 0.76577 0.75342 1.21648 1.21575 1.21327 0.90340 0.90093 0.90416 0.93457 0.89308 0.84787 0.94055 0.92930 0.92224 0.97429 0.97225 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.02 36.01 0.36 -0.31 16 2 C 0.02 0.21 6.89 -83.66 -0.58 -0.37 16 3 N -0.25 -3.85 11.68 32.45 0.38 -3.47 16 4 N -0.30 -4.79 12.54 60.35 0.76 -4.04 16 5 S 0.45 6.22 23.40 -107.50 -2.52 3.71 16 6 C -0.24 -3.32 6.18 -35.35 -0.22 -3.54 16 7 C 0.14 1.89 5.59 -4.98 -0.03 1.87 16 8 N -0.66 -11.20 5.95 -107.99 -0.64 -11.84 16 9 C 0.10 1.79 2.53 -67.72 -0.17 1.62 16 10 H 0.07 1.30 7.80 -51.93 -0.40 0.89 16 11 C -0.18 -2.72 9.16 37.16 0.34 -2.38 16 12 C 0.02 0.48 3.97 -27.88 -0.11 0.37 16 13 C -0.57 -15.74 8.84 -34.44 -0.30 -16.05 16 14 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 15 C 0.01 0.24 5.46 -17.82 -0.10 0.14 16 16 N -0.92 -28.24 13.65 55.43 0.76 -27.49 16 17 Si 1.07 25.57 29.90 -169.99 -5.08 20.49 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.08 0.72 7.68 -51.93 -0.40 0.32 16 24 H 0.05 0.55 7.07 -51.93 -0.37 0.19 16 25 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 26 H 0.33 5.41 8.46 -39.30 -0.33 5.08 16 27 H 0.04 0.51 7.45 -51.93 -0.39 0.12 16 28 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 31 H 0.01 0.25 8.00 -51.93 -0.42 -0.17 16 32 H 0.27 8.08 7.22 -40.82 -0.29 7.78 16 LS Contribution 287.14 15.07 4.33 4.33 Total: -1.00 -31.58 287.14 -7.15 -38.73 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.33 Total: -1.77 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.80 Total: -18.64 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 1.25 Total: -46.84 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -2.52 Total: 3.71 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.58 -7.15 -38.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.566 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds