Wall clock time and date at job start Mon Mar 30 2020 03:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31745 * 123.76267 * 2 1 4 4 N 1.27577 * 118.27018 * 180.30350 * 3 2 1 5 5 S 1.56509 * 109.22200 * 359.73124 * 4 3 2 6 6 C 1.35339 * 123.76873 * 179.80286 * 2 1 3 7 7 C 1.50693 * 127.92427 * 0.02681 * 6 2 1 8 8 N 1.46908 * 109.47347 * 89.69982 * 7 6 2 9 9 C 1.46894 * 110.99955 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47779 * 324.99869 * 9 8 7 11 11 C 1.52998 * 109.47018 * 85.00186 * 9 8 7 12 12 C 1.53002 * 109.47229 * 204.99899 * 9 8 7 13 13 C 1.50706 * 109.47153 * 64.99752 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 H 1.09003 * 109.46684 * 270.19189 * 1 2 3 22 22 H 1.08997 * 109.46938 * 30.19462 * 1 2 3 23 23 H 1.08999 * 109.46682 * 150.19425 * 1 2 3 24 24 H 1.09002 * 109.47128 * 329.70092 * 7 6 2 25 25 H 1.09003 * 109.47028 * 209.69688 * 7 6 2 26 26 H 1.00893 * 111.00020 * 303.95580 * 8 7 6 27 27 H 1.09001 * 109.46923 * 299.99707 * 11 9 8 28 28 H 1.08995 * 109.47190 * 60.00037 * 11 9 8 29 29 H 1.09007 * 109.46878 * 179.97438 * 11 9 8 30 30 H 1.09004 * 109.47178 * 305.00542 * 12 9 8 31 31 H 1.08993 * 109.47411 * 185.00225 * 12 9 8 32 32 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0953 0.0000 4 7 3.5091 0.9732 -0.0060 5 16 3.8806 -0.5472 -0.0051 6 6 2.2593 -1.1251 0.0039 7 6 1.7860 -2.5557 0.0082 8 7 1.6258 -3.0228 -1.3754 9 6 1.1650 -4.4171 -1.4102 10 1 1.6075 -4.9671 -0.5797 11 6 -0.3599 -4.4534 -1.2909 12 6 1.5885 -5.0614 -2.7318 13 6 3.0924 -5.1368 -2.7946 14 1 3.6865 -4.7630 -1.9739 15 6 3.7097 -5.6829 -3.8998 16 7 2.9861 -6.1430 -4.8970 17 14 5.5737 -5.7771 -3.9774 18 1 6.1059 -4.5417 -4.6066 19 1 6.1204 -5.9075 -2.6029 20 1 5.9767 -6.9567 -4.7844 21 1 -0.3633 0.0034 1.0277 22 1 -0.3633 0.8882 -0.5168 23 1 -0.3633 -0.8917 -0.5108 24 1 0.8293 -2.6203 0.5266 25 1 2.5192 -3.1794 0.5196 26 1 0.9996 -2.4217 -1.8897 27 1 -0.6617 -3.9944 -0.3494 28 1 -0.8025 -3.9036 -2.1215 29 1 -0.7019 -5.4881 -1.3173 30 1 1.2199 -4.4608 -3.5634 31 1 1.1713 -6.0662 -2.7963 32 1 2.0181 -6.0944 -4.8567 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:06 Heat of formation + Delta-G solvation = 29.942907 kcal Electronic energy + Delta-G solvation = -15059.433142 eV Core-core repulsion = 12567.004172 eV Total energy + Delta-G solvation = -2492.428971 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.92783 -38.58660 -35.60644 -34.40506 -32.08131 -29.16551 -28.65783 -27.78566 -25.37803 -24.68261 -21.73509 -21.21817 -19.60660 -18.84308 -17.05973 -16.56901 -16.18232 -15.80293 -15.61145 -15.13514 -14.71897 -14.22065 -13.91808 -13.85448 -13.49436 -13.30174 -13.17038 -12.98798 -12.89051 -12.50585 -12.21515 -12.08536 -11.90163 -11.44966 -11.08522 -10.65410 -10.58166 -10.52578 -10.42984 -9.14291 -8.51971 -6.17777 -0.78700 0.18539 0.73999 1.17856 1.55906 1.64595 1.81000 2.64539 3.08553 3.25662 3.38404 3.71779 3.76975 4.15633 4.35369 4.36779 4.49599 4.53201 4.65663 4.69777 4.77399 4.90419 5.14326 5.16269 5.18970 5.28540 5.49354 6.14125 6.26528 6.38816 6.54165 6.74327 6.78639 7.59624 8.89150 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023284 B = 0.007048 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.267067 B = 3971.941554 C = 4904.899404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.018 3.982 3 N -0.270 5.270 4 N -0.331 5.331 5 S 0.469 5.531 6 C -0.249 4.249 7 C 0.146 3.854 8 N -0.679 5.679 9 C 0.108 3.892 10 H 0.068 0.932 11 C -0.172 4.172 12 C 0.019 3.981 13 C -0.573 4.573 14 H 0.053 0.947 15 C -0.049 4.049 16 N -0.953 5.953 17 Si 1.111 2.889 18 H -0.281 1.281 19 H -0.266 1.266 20 H -0.289 1.289 21 H 0.100 0.900 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.338 0.662 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.056 0.944 30 H -0.016 1.016 31 H -0.011 1.011 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.728 8.784 13.300 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 N -0.136 5.136 4 N -0.310 5.310 5 S 0.605 5.395 6 C -0.387 4.387 7 C 0.015 3.985 8 N -0.311 5.311 9 C -0.001 4.001 10 H 0.087 0.913 11 C -0.231 4.231 12 C -0.018 4.018 13 C -0.611 4.611 14 H 0.071 0.929 15 C -0.244 4.244 16 N -0.593 5.593 17 Si 0.935 3.065 18 H -0.207 1.207 19 H -0.191 1.191 20 H -0.215 1.215 21 H 0.118 0.882 22 H 0.103 0.897 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.157 0.843 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.002 0.998 31 H 0.008 0.992 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.169 9.267 12.316 15.457 hybrid contribution -3.582 -0.038 0.664 3.643 sum -4.751 9.228 12.980 16.620 Atomic orbital electron populations 1.20411 0.82972 1.04587 1.04804 1.22694 1.01533 0.86179 1.02410 1.71208 0.97135 1.29079 1.16220 1.78613 1.10766 1.17247 1.24385 1.81478 1.09643 0.99133 1.49265 1.27124 0.99411 1.02399 1.09803 1.20225 1.01263 0.85873 0.91161 1.60398 1.55739 1.02968 1.11993 1.21332 0.92825 0.88048 0.97936 0.91325 1.22449 0.96144 1.02456 1.02072 1.19191 0.95988 0.93134 0.93507 1.22334 0.93043 1.40487 1.05285 0.92887 1.27177 1.10660 0.93805 0.92803 1.70897 1.07035 1.47250 1.34110 0.82999 0.70195 0.76739 0.76615 1.20677 1.19057 1.21513 0.88199 0.89688 0.89280 0.90395 0.89263 0.84314 0.90561 0.92884 0.92501 0.99771 0.99247 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.02 71.24 0.71 -0.43 16 2 C 0.02 0.46 6.89 41.90 0.29 0.74 16 3 N -0.27 -8.14 11.68 -51.25 -0.60 -8.73 16 4 N -0.33 -10.15 12.54 37.02 0.46 -9.69 16 5 S 0.47 12.31 23.40 -56.49 -1.32 10.98 16 6 C -0.25 -6.26 6.18 25.01 0.15 -6.10 16 7 C 0.15 3.52 5.59 85.55 0.48 4.00 16 8 N -0.68 -21.71 5.95 -495.58 -2.95 -24.66 16 9 C 0.11 3.81 2.53 44.92 0.11 3.92 16 10 H 0.07 2.43 7.80 -2.39 -0.02 2.41 16 11 C -0.17 -4.65 9.16 71.98 0.66 -3.99 16 12 C 0.02 0.94 3.97 29.85 0.12 1.06 16 13 C -0.57 -31.50 8.84 25.60 0.23 -31.27 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C -0.05 -2.83 5.46 84.65 0.46 -2.37 16 16 N -0.95 -59.46 13.65 21.45 0.29 -59.17 16 17 Si 1.11 51.00 29.90 68.60 2.05 53.05 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.09 1.31 7.68 -2.39 -0.02 1.29 16 24 H 0.08 1.46 7.07 -2.39 -0.02 1.44 16 25 H 0.09 2.18 8.05 -2.39 -0.02 2.16 16 26 H 0.34 10.24 8.46 -89.70 -0.76 9.48 16 27 H 0.08 1.55 7.45 -2.39 -0.02 1.53 16 28 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 30 H -0.02 -0.85 8.01 -2.39 -0.02 -0.87 16 31 H -0.01 -0.56 8.00 -2.39 -0.02 -0.58 16 32 H 0.25 15.89 7.22 -92.71 -0.67 15.22 16 Total: -1.00 -68.39 287.14 1.62 -66.78 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 0.46 Total: 5.86 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 3.21 Total: -34.43 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -2.79 Total: -102.25 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Atomic # 16 Polarization: 12.31 SS G_CDS: -1.32 Total: 10.98 kcal Total: -68.39 1.62 -66.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.721 kcal (2) G-P(sol) polarization free energy of solvation -68.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds