Wall clock time and date at job start Mon Mar 30 2020 04:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 119.99839 * 2 1 4 4 N 1.34778 * 120.00215 * 179.97438 * 2 1 3 5 5 C 1.47583 * 134.49285 * 180.02562 * 4 2 1 6 6 C 1.53944 * 86.11753 * 155.35702 * 5 4 2 7 7 O 1.45197 * 113.74142 * 137.95023 * 6 5 4 8 8 C 1.34227 * 116.99608 * 151.92277 * 7 6 5 9 9 O 1.20829 * 120.00309 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99922 * 179.97438 * 8 7 6 11 11 H 1.09005 * 109.46877 * 60.00146 * 10 8 7 12 12 C 1.53000 * 109.47003 * 300.00449 * 10 8 7 13 13 C 1.50696 * 109.47007 * 179.97438 * 10 8 7 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 8 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47814 * 134.45604 * 359.86978 * 4 2 1 22 22 H 1.09005 * 109.46952 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47549 * 300.00036 * 1 2 3 24 24 H 1.09005 * 109.47099 * 60.00689 * 1 2 3 25 25 H 1.09001 * 113.76845 * 41.05310 * 5 4 2 26 26 H 1.08998 * 113.87155 * 269.67059 * 5 4 2 27 27 H 1.09004 * 113.74049 * 269.15689 * 6 5 4 28 28 H 1.08996 * 109.47024 * 59.99731 * 12 10 8 29 29 H 1.08998 * 109.46637 * 179.97438 * 12 10 8 30 30 H 1.08997 * 109.46749 * 299.99588 * 12 10 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 32 32 H 1.08996 * 113.76773 * 90.38153 * 21 4 2 33 33 H 1.08996 * 113.83197 * 318.91411 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6098 -1.5365 0.0012 6 6 3.1593 -2.8619 0.6417 7 8 3.8338 -4.0299 0.1041 8 6 3.9657 -5.0869 0.9208 9 8 3.5316 -5.0380 2.0473 10 6 4.6544 -6.3353 0.4322 11 1 5.6780 -6.0962 0.1435 12 6 3.9007 -6.8937 -0.7765 13 6 4.6709 -7.3636 1.5337 14 1 4.2268 -7.1363 2.4915 15 6 5.2531 -8.5949 1.3185 16 7 5.2671 -9.4926 2.2796 17 14 6.0219 -8.9878 -0.3380 18 1 4.9986 -9.5935 -1.2275 19 1 6.5361 -7.7383 -0.9540 20 1 7.1422 -9.9442 -0.1493 21 6 1.7849 -2.5913 0.0036 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 4.2231 -0.9179 0.6564 26 1 4.0358 -1.6526 -0.9954 27 1 3.1486 -2.8413 1.7315 28 1 3.8892 -6.1496 -1.5729 29 1 4.3991 -7.7963 -1.1301 30 1 2.8772 -7.1327 -0.4877 31 1 5.6763 -10.3589 2.1281 32 1 1.6716 -3.0179 -0.9930 33 1 0.9441 -2.8132 0.6608 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851076534.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:55 Heat of formation + Delta-G solvation = -80.544409 kcal Electronic energy + Delta-G solvation = -17168.059920 eV Core-core repulsion = 14195.794238 eV Total energy + Delta-G solvation = -2972.265682 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.69453 -39.47810 -37.73805 -35.47161 -34.06622 -31.45364 -31.01663 -28.24987 -26.39660 -25.26183 -24.04001 -21.64403 -20.01848 -19.17037 -17.42246 -17.23508 -16.62489 -16.15909 -15.88020 -15.39239 -15.11947 -14.50859 -13.94638 -13.39294 -13.30926 -13.00489 -12.82415 -12.71959 -12.42394 -12.35332 -11.87558 -11.83094 -11.45995 -11.10164 -10.75086 -10.50032 -10.26712 -10.04835 -9.74779 -9.36570 -9.24363 -8.99175 -8.70211 -6.17981 -4.21357 2.38199 2.43237 2.97413 3.17831 3.26376 3.30133 3.31629 4.14372 4.26517 4.27679 4.67997 4.89973 4.99048 5.11536 5.15157 5.17484 5.24441 5.39922 5.42815 5.45386 5.63778 5.92349 6.07122 6.23305 6.34420 6.62566 6.93895 7.01885 7.40280 7.41272 7.89707 8.32241 8.57630 8.96776 9.38408 10.94223 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.057383 B = 0.004745 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.829565 B = 5899.048394 C = 6027.618605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.539 3.461 3 O -0.549 6.549 4 N -0.643 5.643 5 C 0.111 3.889 6 C 0.047 3.953 7 O -0.352 6.352 8 C 0.474 3.526 9 O -0.498 6.498 10 C 0.025 3.975 11 H 0.065 0.935 12 C -0.146 4.146 13 C -0.521 4.521 14 H 0.095 0.905 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.883 3.117 18 H -0.275 1.275 19 H -0.264 1.264 20 H -0.293 1.293 21 C 0.091 3.909 22 H 0.077 0.923 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.267 0.733 32 H 0.100 0.900 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 12.628 -7.814 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.330 3.670 3 O -0.427 6.427 4 N -0.382 5.382 5 C -0.011 4.011 6 C -0.010 4.010 7 O -0.269 6.269 8 C 0.317 3.683 9 O -0.383 6.383 10 C 0.006 3.994 11 H 0.083 0.917 12 C -0.203 4.203 13 C -0.558 4.558 14 H 0.113 0.887 15 C -0.127 4.127 16 N -0.527 5.527 17 Si 0.713 3.287 18 H -0.202 1.202 19 H -0.189 1.189 20 H -0.221 1.221 21 C -0.032 4.032 22 H 0.096 0.904 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.197 13.229 -7.386 16.773 hybrid contribution 0.305 -0.425 -0.768 0.929 sum -6.891 12.803 -8.154 16.670 Atomic orbital electron populations 1.21813 0.91008 1.04464 1.05272 1.20468 0.90231 0.81338 0.75007 1.90732 1.70798 1.30369 1.50769 1.49796 1.09113 1.05654 1.73588 1.23336 0.83779 0.91796 1.02217 1.24662 0.91768 0.83964 1.00573 1.86703 1.71204 1.23239 1.45750 1.24649 0.76173 0.83820 0.83655 1.90553 1.45568 1.81492 1.20637 1.19162 0.95669 0.87802 0.96761 0.91719 1.22098 1.01233 1.00038 0.96969 1.20902 1.39267 0.96582 0.99062 0.88748 1.24918 0.95201 0.95823 0.96759 1.69864 1.44128 1.06204 1.32506 0.86922 0.78846 0.78612 0.84345 1.20222 1.18919 1.22051 1.23762 0.98412 0.78645 1.02363 0.90448 0.88585 0.88591 0.89065 0.88363 0.86144 0.93648 0.92941 0.92323 0.92263 0.88206 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.34 36.00 0.37 -0.91 16 2 C 0.54 6.64 8.17 -10.99 -0.09 6.55 16 3 O -0.55 -9.03 17.83 5.55 0.10 -8.93 16 4 N -0.64 -7.50 3.61 -178.37 -0.64 -8.15 16 5 C 0.11 1.30 8.68 -2.97 -0.03 1.28 16 6 C 0.05 0.63 4.41 -25.81 -0.11 0.51 16 7 O -0.35 -5.77 10.15 -39.25 -0.40 -6.17 16 8 C 0.47 9.78 7.25 36.01 0.26 10.05 16 9 O -0.50 -11.62 14.66 -18.75 -0.27 -11.90 16 10 C 0.03 0.57 2.33 -92.92 -0.22 0.35 16 11 H 0.07 1.41 7.20 -51.93 -0.37 1.04 16 12 C -0.15 -2.87 8.61 37.16 0.32 -2.55 16 13 C -0.52 -14.31 8.96 -34.44 -0.31 -14.62 16 14 H 0.09 2.94 7.00 -52.49 -0.37 2.57 16 15 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 16 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 17 Si 0.88 20.37 24.37 -169.99 -4.14 16.23 16 18 H -0.28 -6.12 6.87 56.52 0.39 -5.73 16 19 H -0.26 -5.68 6.53 56.52 0.37 -5.32 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 C 0.09 0.95 8.00 -2.84 -0.02 0.93 16 22 H 0.08 0.48 7.22 -51.93 -0.37 0.10 16 23 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.12 1.75 7.11 -51.93 -0.37 1.38 16 28 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 29 H 0.05 1.07 3.28 -51.93 -0.17 0.90 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.83 7.97 -51.93 -0.41 0.42 16 LS Contribution 282.32 15.07 4.25 4.25 Total: -1.00 -33.07 282.32 -4.46 -37.53 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.21 Total: -0.80 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 0.08 Total: 3.59 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.13 Total: -33.82 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.57 Total: -26.99 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.14 Total: 16.23 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.07 -4.46 -37.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851076534.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.010 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds