Wall clock time and date at job start Mon Mar 30 2020 04:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 119.99839 * 2 1 4 4 N 1.34778 * 120.00215 * 179.97438 * 2 1 3 5 5 C 1.47583 * 134.49285 * 180.02562 * 4 2 1 6 6 C 1.53944 * 86.11753 * 155.35702 * 5 4 2 7 7 O 1.45197 * 113.74142 * 137.95023 * 6 5 4 8 8 C 1.34227 * 116.99608 * 151.92277 * 7 6 5 9 9 O 1.20829 * 120.00309 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99922 * 179.97438 * 8 7 6 11 11 H 1.09005 * 109.46877 * 60.00146 * 10 8 7 12 12 C 1.53000 * 109.47003 * 300.00449 * 10 8 7 13 13 C 1.50696 * 109.47007 * 179.97438 * 10 8 7 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 8 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47814 * 134.45604 * 359.86978 * 4 2 1 22 22 H 1.09005 * 109.46952 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47549 * 300.00036 * 1 2 3 24 24 H 1.09005 * 109.47099 * 60.00689 * 1 2 3 25 25 H 1.09001 * 113.76845 * 41.05310 * 5 4 2 26 26 H 1.08998 * 113.87155 * 269.67059 * 5 4 2 27 27 H 1.09004 * 113.74049 * 269.15689 * 6 5 4 28 28 H 1.08996 * 109.47024 * 59.99731 * 12 10 8 29 29 H 1.08998 * 109.46637 * 179.97438 * 12 10 8 30 30 H 1.08997 * 109.46749 * 299.99588 * 12 10 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 32 32 H 1.08996 * 113.76773 * 90.38153 * 21 4 2 33 33 H 1.08996 * 113.83197 * 318.91411 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6098 -1.5365 0.0012 6 6 3.1593 -2.8619 0.6417 7 8 3.8338 -4.0299 0.1041 8 6 3.9657 -5.0869 0.9208 9 8 3.5316 -5.0380 2.0473 10 6 4.6544 -6.3353 0.4322 11 1 5.6780 -6.0962 0.1435 12 6 3.9007 -6.8937 -0.7765 13 6 4.6709 -7.3636 1.5337 14 1 4.2268 -7.1363 2.4915 15 6 5.2531 -8.5949 1.3185 16 7 5.2671 -9.4926 2.2796 17 14 6.0219 -8.9878 -0.3380 18 1 4.9986 -9.5935 -1.2275 19 1 6.5361 -7.7383 -0.9540 20 1 7.1422 -9.9442 -0.1493 21 6 1.7849 -2.5913 0.0036 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 4.2231 -0.9179 0.6564 26 1 4.0358 -1.6526 -0.9954 27 1 3.1486 -2.8413 1.7315 28 1 3.8892 -6.1496 -1.5729 29 1 4.3991 -7.7963 -1.1301 30 1 2.8772 -7.1327 -0.4877 31 1 5.6763 -10.3589 2.1281 32 1 1.6716 -3.0179 -0.9930 33 1 0.9441 -2.8132 0.6608 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851076534.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:55 Heat of formation + Delta-G solvation = -104.425811 kcal Electronic energy + Delta-G solvation = -17169.095496 eV Core-core repulsion = 14195.794238 eV Total energy + Delta-G solvation = -2973.301258 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.88663 -40.79227 -38.89097 -36.90113 -35.93484 -33.38975 -31.91878 -29.13485 -27.29749 -27.13402 -25.63691 -22.89836 -21.55236 -20.09516 -19.04365 -18.39725 -18.20302 -17.47398 -17.27288 -16.70505 -16.47254 -15.97495 -15.09318 -14.87605 -14.66521 -14.29847 -14.01715 -13.82711 -13.52755 -13.31119 -13.21896 -13.05815 -12.86209 -12.65033 -12.55540 -12.21000 -11.52958 -11.44409 -11.25291 -11.15381 -10.97976 -10.74523 -9.94848 -8.29375 -6.39698 1.33592 1.37758 1.39999 1.43788 1.47862 1.54362 2.04912 2.34395 3.04317 3.17882 3.35045 3.70050 3.94724 4.07883 4.25304 4.40637 4.41474 4.44889 4.51369 4.58016 4.59962 4.64458 4.68250 4.92287 5.02011 5.04999 5.39755 5.43629 5.51203 6.23123 6.50063 6.72994 6.95764 6.98116 7.25574 8.87298 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.057383 B = 0.004745 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.829565 B = 5899.048394 C = 6027.618605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.532 3.468 3 O -0.598 6.598 4 N -0.644 5.644 5 C 0.112 3.888 6 C 0.033 3.967 7 O -0.336 6.336 8 C 0.483 3.517 9 O -0.536 6.536 10 C 0.018 3.982 11 H 0.079 0.921 12 C -0.140 4.140 13 C -0.532 4.532 14 H 0.038 0.962 15 C 0.015 3.985 16 N -0.946 5.946 17 Si 0.954 3.046 18 H -0.256 1.256 19 H -0.232 1.232 20 H -0.300 1.300 21 C 0.104 3.896 22 H 0.097 0.903 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.270 0.730 32 H 0.122 0.878 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 13.388 -10.928 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.325 3.675 3 O -0.480 6.480 4 N -0.382 5.382 5 C -0.011 4.011 6 C -0.023 4.023 7 O -0.252 6.252 8 C 0.327 3.673 9 O -0.424 6.424 10 C -0.002 4.002 11 H 0.097 0.903 12 C -0.197 4.197 13 C -0.570 4.570 14 H 0.056 0.944 15 C -0.183 4.183 16 N -0.585 5.585 17 Si 0.778 3.222 18 H -0.182 1.182 19 H -0.155 1.155 20 H -0.227 1.227 21 C -0.018 4.018 22 H 0.116 0.884 23 H 0.124 0.876 24 H 0.129 0.871 25 H 0.106 0.894 26 H 0.132 0.868 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.876 14.009 -10.528 19.212 hybrid contribution 0.477 -0.575 0.312 0.809 sum -7.399 13.434 -10.216 18.428 Atomic orbital electron populations 1.21865 0.87243 1.06223 1.06410 1.21331 0.91941 0.80501 0.73710 1.90709 1.72107 1.32026 1.53129 1.49861 1.09053 1.06219 1.73021 1.23384 0.84380 0.90482 1.02818 1.24944 0.94113 0.83156 1.00122 1.86624 1.71223 1.23038 1.44329 1.24238 0.75434 0.84434 0.83178 1.90553 1.47251 1.82326 1.22299 1.19100 0.97283 0.87563 0.96226 0.90297 1.22010 1.00345 1.00895 0.96465 1.21040 1.38727 0.98453 0.98750 0.94410 1.25918 0.95610 0.95291 1.01434 1.70045 1.45896 1.07006 1.35587 0.85788 0.77920 0.79536 0.78914 1.18193 1.15472 1.22731 1.23846 0.96906 0.77452 1.03571 0.88366 0.87647 0.87129 0.89370 0.86776 0.87834 0.89369 0.93270 0.92653 0.92137 0.85988 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 10.34 71.24 0.74 -1.24 16 2 C 0.53 12.12 8.17 87.66 0.72 12.84 16 3 O -0.60 -19.28 17.83 -3.05 -0.05 -19.33 16 4 N -0.64 -13.53 3.61 -840.39 -3.04 -16.57 16 5 C 0.11 2.42 8.68 86.48 0.75 3.17 16 6 C 0.03 0.82 4.41 31.25 0.14 0.96 16 7 O -0.34 -10.24 10.15 -51.39 -0.52 -10.77 16 8 C 0.48 19.57 7.25 71.24 0.52 20.08 16 9 O -0.54 -25.67 14.66 21.95 0.32 -25.35 16 10 C 0.02 0.77 2.33 -12.28 -0.03 0.74 16 11 H 0.08 3.22 7.20 -2.38 -0.02 3.20 16 12 C -0.14 -5.00 8.61 71.98 0.62 -4.38 16 13 C -0.53 -29.97 8.96 25.60 0.23 -29.74 16 14 H 0.04 2.50 7.00 -2.91 -0.02 2.47 16 15 C 0.02 0.85 5.45 84.66 0.46 1.31 16 16 N -0.95 -58.17 13.96 21.45 0.30 -57.87 16 17 Si 0.95 40.85 24.37 68.60 1.67 42.52 16 18 H -0.26 -10.17 6.87 99.48 0.68 -9.49 16 19 H -0.23 -8.65 6.53 99.48 0.65 -8.00 16 20 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 21 C 0.10 1.84 8.00 86.44 0.69 2.53 16 22 H 0.10 0.81 7.22 -2.38 -0.02 0.79 16 23 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.10 3.00 7.11 -2.38 -0.02 2.98 16 28 H 0.09 2.41 8.11 -2.39 -0.02 2.39 16 29 H 0.05 1.79 3.28 -2.39 -0.01 1.79 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 32 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 1.60 7.97 -2.39 -0.02 1.58 16 Total: -1.00 -75.75 282.32 4.55 -71.21 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.03 Total: 9.88 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 4.83 Total: 6.27 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -2.74 Total: -74.43 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -0.25 Total: -55.45 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 1.67 Total: 42.52 kcal Total: -75.75 4.55 -71.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851076534.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.219 kcal (2) G-P(sol) polarization free energy of solvation -75.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds