Wall clock time and date at job start Mon Mar 30 2020 04:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 119.99946 * 2 1 4 4 N 1.34771 * 119.99918 * 179.97438 * 2 1 3 5 5 C 1.47579 * 134.49177 * 180.02562 * 4 2 1 6 6 C 1.53946 * 86.11768 * 155.36385 * 5 4 2 7 7 O 1.45201 * 113.74517 * 137.95748 * 6 5 4 8 8 C 1.34228 * 116.99993 * 151.92452 * 7 6 5 9 9 O 1.20825 * 120.00238 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99651 * 179.97438 * 8 7 6 11 11 H 1.09004 * 109.47220 * 299.99699 * 10 8 7 12 12 C 1.53000 * 109.47112 * 60.00053 * 10 8 7 13 13 C 1.50703 * 109.46927 * 180.02562 * 10 8 7 14 14 H 1.07999 * 120.00152 * 354.34994 * 13 10 8 15 15 C 1.37879 * 119.99898 * 174.35793 * 13 10 8 16 16 N 1.31507 * 119.99939 * 156.51722 * 15 13 10 17 17 Si 1.86800 * 119.99920 * 336.79832 * 15 13 10 18 18 H 1.48500 * 109.47295 * 179.72490 * 17 15 13 19 19 H 1.48504 * 109.47219 * 299.72276 * 17 15 13 20 20 H 1.48507 * 109.47298 * 59.72421 * 17 15 13 21 21 C 1.47811 * 134.45896 * 359.87115 * 4 2 1 22 22 H 1.09000 * 109.47745 * 270.00446 * 1 2 3 23 23 H 1.09001 * 109.47270 * 30.00068 * 1 2 3 24 24 H 1.09000 * 109.47493 * 149.99989 * 1 2 3 25 25 H 1.08999 * 113.77046 * 41.05957 * 5 4 2 26 26 H 1.08999 * 113.87063 * 269.67345 * 5 4 2 27 27 H 1.09001 * 113.73863 * 269.15313 * 6 5 4 28 28 H 1.08999 * 109.47261 * 173.11949 * 12 10 8 29 29 H 1.09007 * 109.46646 * 293.11218 * 12 10 8 30 30 H 1.08994 * 109.47507 * 53.11024 * 12 10 8 31 31 H 0.96999 * 120.00644 * 355.21451 * 16 15 13 32 32 H 1.09008 * 113.76917 * 90.37407 * 21 4 2 33 33 H 1.09002 * 113.83540 * 318.91892 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6096 -1.5365 0.0012 6 6 3.1591 -2.8619 0.6415 7 8 3.8337 -4.0300 0.1040 8 6 3.9655 -5.0872 0.9206 9 8 3.5320 -5.0380 2.0473 10 6 4.6542 -6.3354 0.4320 11 1 4.1173 -6.7332 -0.4292 12 6 6.0909 -5.9998 0.0268 13 6 4.6694 -7.3644 1.5329 14 1 4.3078 -7.1072 2.5175 15 6 5.1452 -8.6341 1.2831 16 7 5.5936 -9.3748 2.2730 17 14 5.1602 -9.2994 -0.4623 18 1 5.7218 -10.6741 -0.4634 19 1 3.7733 -9.3309 -0.9920 20 1 5.9976 -8.4220 -1.3193 21 6 1.7848 -2.5912 0.0035 22 1 -0.3634 0.0001 1.0276 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 4.2230 -0.9181 0.6565 26 1 4.0357 -1.6526 -0.9954 27 1 3.1484 -2.8415 1.7313 28 1 6.6258 -6.9195 -0.2101 29 1 6.0792 -5.3505 -0.8487 30 1 6.5911 -5.4903 0.8504 31 1 5.6545 -9.0041 3.1673 32 1 1.6714 -3.0178 -0.9932 33 1 0.9439 -2.8132 0.6607 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851076535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:57 Heat of formation + Delta-G solvation = -90.017063 kcal Electronic energy + Delta-G solvation = -17145.366246 eV Core-core repulsion = 14172.689799 eV Total energy + Delta-G solvation = -2972.676448 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.69211 -39.46945 -37.74210 -35.46341 -34.01042 -31.38149 -30.98509 -28.23721 -26.40897 -24.96972 -23.78735 -21.52246 -19.91835 -19.17430 -17.56064 -17.28123 -17.09973 -16.27059 -15.87902 -15.33363 -14.97773 -14.19277 -13.78225 -13.44951 -13.13302 -13.04090 -12.79078 -12.70117 -12.46480 -12.08686 -11.88420 -11.63492 -11.45110 -11.21476 -10.60476 -10.35556 -10.29557 -10.06073 -9.92892 -9.40431 -9.07236 -8.99912 -8.29290 -6.60793 -4.18393 2.37124 2.43073 2.98254 3.30908 3.32637 3.36809 3.54463 4.13776 4.26304 4.41105 4.67551 4.92001 4.97179 5.09648 5.12570 5.16141 5.24139 5.39310 5.41803 5.47077 5.64355 5.98461 6.14324 6.36858 6.44530 6.77227 6.95946 7.13741 7.40588 7.73686 7.88761 8.33213 8.58790 8.87471 9.48146 10.79490 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.053066 B = 0.004728 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.518128 B = 5921.192411 C = 5962.668056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.538 3.462 3 O -0.548 6.548 4 N -0.644 5.644 5 C 0.112 3.888 6 C 0.046 3.954 7 O -0.352 6.352 8 C 0.472 3.528 9 O -0.503 6.503 10 C 0.035 3.965 11 H 0.056 0.944 12 C -0.141 4.141 13 C -0.610 4.610 14 H 0.077 0.923 15 C 0.042 3.958 16 N -0.889 5.889 17 Si 1.032 2.968 18 H -0.282 1.282 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.091 3.909 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.273 0.727 32 H 0.100 0.900 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 12.657 -7.503 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.329 3.671 3 O -0.426 6.426 4 N -0.382 5.382 5 C -0.011 4.011 6 C -0.011 4.011 7 O -0.269 6.269 8 C 0.316 3.684 9 O -0.388 6.388 10 C 0.015 3.985 11 H 0.074 0.926 12 C -0.199 4.199 13 C -0.647 4.647 14 H 0.095 0.905 15 C -0.165 4.165 16 N -0.521 5.521 17 Si 0.859 3.141 18 H -0.207 1.207 19 H -0.207 1.207 20 H -0.200 1.200 21 C -0.032 4.032 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.036 12.086 -8.018 16.120 hybrid contribution -0.513 1.339 1.055 1.781 sum -7.549 13.425 -6.962 16.902 Atomic orbital electron populations 1.21837 0.90992 1.04867 1.04925 1.20463 0.90246 0.81328 0.75026 1.90731 1.70863 1.30360 1.50642 1.49760 1.09112 1.05645 1.73695 1.23333 0.83752 0.91767 1.02219 1.24647 0.91815 0.84112 1.00491 1.86728 1.71132 1.23247 1.45792 1.24917 0.75817 0.83919 0.83782 1.90527 1.45951 1.81552 1.20808 1.19063 0.92638 0.87339 0.99445 0.92623 1.22092 0.97340 1.01267 0.99192 1.21893 1.48596 0.96830 0.97368 0.90525 1.25705 0.92021 0.93574 1.05213 1.70830 1.38016 1.40674 1.02626 0.84217 0.77332 0.76964 0.75596 1.20708 1.20718 1.19964 1.23755 0.98392 0.78657 1.02351 0.88704 0.88710 0.90117 0.89123 0.88332 0.86315 0.91683 0.94343 0.93403 0.91732 0.88194 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.14 36.00 0.37 -0.94 16 2 C 0.54 6.71 8.17 -10.99 -0.09 6.62 16 3 O -0.55 -9.09 17.83 5.56 0.10 -8.99 16 4 N -0.64 -7.63 3.61 -178.38 -0.64 -8.28 16 5 C 0.11 1.34 8.68 -2.97 -0.03 1.32 16 6 C 0.05 0.63 4.41 -25.82 -0.11 0.52 16 7 O -0.35 -5.93 10.18 -39.25 -0.40 -6.33 16 8 C 0.47 10.00 7.24 36.01 0.26 10.26 16 9 O -0.50 -12.03 14.66 -18.75 -0.27 -12.30 16 10 C 0.03 0.79 2.34 -92.92 -0.22 0.58 16 11 H 0.06 1.20 6.71 -51.93 -0.35 0.85 16 12 C -0.14 -2.87 8.85 37.16 0.33 -2.54 16 13 C -0.61 -16.76 8.57 -34.44 -0.30 -17.06 16 14 H 0.08 2.37 7.02 -52.49 -0.37 2.00 16 15 C 0.04 1.16 5.19 -17.82 -0.09 1.06 16 16 N -0.89 -26.37 13.70 55.43 0.76 -25.61 16 17 Si 1.03 23.27 26.45 -169.99 -4.50 18.78 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.57 6.15 56.52 0.35 -5.22 16 21 C 0.09 0.98 8.25 -2.85 -0.02 0.95 16 22 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.12 1.78 7.11 -51.93 -0.37 1.41 16 28 H 0.06 1.36 5.48 -51.93 -0.28 1.08 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 32 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 286.67 15.07 4.32 4.32 Total: -1.00 -32.93 286.67 -4.91 -37.84 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.37 Total: -0.20 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 0.10 Total: 0.78 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.11 Total: -33.89 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.58 Total: -27.62 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.50 Total: 18.78 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.93 -4.91 -37.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851076535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.182 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds