Wall clock time and date at job start Mon Mar 30 2020 04:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 119.99946 * 2 1 4 4 N 1.34771 * 119.99918 * 179.97438 * 2 1 3 5 5 C 1.47579 * 134.49177 * 180.02562 * 4 2 1 6 6 C 1.53946 * 86.11768 * 155.36385 * 5 4 2 7 7 O 1.45201 * 113.74517 * 137.95748 * 6 5 4 8 8 C 1.34228 * 116.99993 * 151.92452 * 7 6 5 9 9 O 1.20825 * 120.00238 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99651 * 179.97438 * 8 7 6 11 11 H 1.09004 * 109.47220 * 299.99699 * 10 8 7 12 12 C 1.53000 * 109.47112 * 60.00053 * 10 8 7 13 13 C 1.50703 * 109.46927 * 180.02562 * 10 8 7 14 14 H 1.07999 * 120.00152 * 354.34994 * 13 10 8 15 15 C 1.37879 * 119.99898 * 174.35793 * 13 10 8 16 16 N 1.31507 * 119.99939 * 156.51722 * 15 13 10 17 17 Si 1.86800 * 119.99920 * 336.79832 * 15 13 10 18 18 H 1.48500 * 109.47295 * 179.72490 * 17 15 13 19 19 H 1.48504 * 109.47219 * 299.72276 * 17 15 13 20 20 H 1.48507 * 109.47298 * 59.72421 * 17 15 13 21 21 C 1.47811 * 134.45896 * 359.87115 * 4 2 1 22 22 H 1.09000 * 109.47745 * 270.00446 * 1 2 3 23 23 H 1.09001 * 109.47270 * 30.00068 * 1 2 3 24 24 H 1.09000 * 109.47493 * 149.99989 * 1 2 3 25 25 H 1.08999 * 113.77046 * 41.05957 * 5 4 2 26 26 H 1.08999 * 113.87063 * 269.67345 * 5 4 2 27 27 H 1.09001 * 113.73863 * 269.15313 * 6 5 4 28 28 H 1.08999 * 109.47261 * 173.11949 * 12 10 8 29 29 H 1.09007 * 109.46646 * 293.11218 * 12 10 8 30 30 H 1.08994 * 109.47507 * 53.11024 * 12 10 8 31 31 H 0.96999 * 120.00644 * 355.21451 * 16 15 13 32 32 H 1.09008 * 113.76917 * 90.37407 * 21 4 2 33 33 H 1.09002 * 113.83540 * 318.91892 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6096 -1.5365 0.0012 6 6 3.1591 -2.8619 0.6415 7 8 3.8337 -4.0300 0.1040 8 6 3.9655 -5.0872 0.9206 9 8 3.5320 -5.0380 2.0473 10 6 4.6542 -6.3354 0.4320 11 1 4.1173 -6.7332 -0.4292 12 6 6.0909 -5.9998 0.0268 13 6 4.6694 -7.3644 1.5329 14 1 4.3078 -7.1072 2.5175 15 6 5.1452 -8.6341 1.2831 16 7 5.5936 -9.3748 2.2730 17 14 5.1602 -9.2994 -0.4623 18 1 5.7218 -10.6741 -0.4634 19 1 3.7733 -9.3309 -0.9920 20 1 5.9976 -8.4220 -1.3193 21 6 1.7848 -2.5912 0.0035 22 1 -0.3634 0.0001 1.0276 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 4.2230 -0.9181 0.6565 26 1 4.0357 -1.6526 -0.9954 27 1 3.1484 -2.8415 1.7313 28 1 6.6258 -6.9195 -0.2101 29 1 6.0792 -5.3505 -0.8487 30 1 6.5911 -5.4903 0.8504 31 1 5.6545 -9.0041 3.1673 32 1 1.6714 -3.0178 -0.9932 33 1 0.9439 -2.8132 0.6607 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851076535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:57 Heat of formation + Delta-G solvation = -113.264617 kcal Electronic energy + Delta-G solvation = -17146.374336 eV Core-core repulsion = 14172.689799 eV Total energy + Delta-G solvation = -2973.684537 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.90773 -40.81095 -38.91513 -36.92800 -35.93958 -33.27925 -31.92695 -29.13582 -27.31975 -26.85603 -25.41637 -22.80683 -21.52301 -20.12572 -19.52865 -18.72001 -18.19619 -17.61855 -17.09378 -16.57321 -16.33715 -15.52925 -15.14275 -14.95953 -14.55230 -14.29627 -13.89713 -13.81457 -13.51581 -13.34716 -13.18251 -13.10236 -12.90799 -12.73076 -12.35233 -12.05270 -11.64873 -11.51871 -11.19496 -11.08027 -11.02436 -10.39393 -9.97148 -8.81410 -6.39269 1.31887 1.37172 1.45301 1.54909 1.61799 1.80054 2.04520 2.55313 3.01292 3.15004 3.33092 3.67793 3.91929 4.07558 4.24304 4.36842 4.43231 4.44125 4.47721 4.56872 4.64225 4.65097 4.71859 4.93377 5.01596 5.13364 5.39225 5.50652 5.80183 6.05196 6.47986 6.57288 6.93758 6.96384 7.37768 8.58032 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.053066 B = 0.004728 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.518128 B = 5921.192411 C = 5962.668056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.532 3.468 3 O -0.598 6.598 4 N -0.645 5.645 5 C 0.113 3.887 6 C 0.032 3.968 7 O -0.336 6.336 8 C 0.479 3.521 9 O -0.542 6.542 10 C 0.025 3.975 11 H 0.082 0.918 12 C -0.135 4.135 13 C -0.619 4.619 14 H 0.023 0.977 15 C -0.008 4.008 16 N -0.924 5.924 17 Si 1.076 2.924 18 H -0.290 1.290 19 H -0.259 1.259 20 H -0.230 1.230 21 C 0.105 3.895 22 H 0.109 0.891 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.253 0.747 32 H 0.122 0.878 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 13.377 -10.627 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.325 3.675 3 O -0.479 6.479 4 N -0.382 5.382 5 C -0.010 4.010 6 C -0.025 4.025 7 O -0.252 6.252 8 C 0.324 3.676 9 O -0.431 6.431 10 C 0.005 3.995 11 H 0.099 0.901 12 C -0.193 4.193 13 C -0.656 4.656 14 H 0.041 0.959 15 C -0.207 4.207 16 N -0.558 5.558 17 Si 0.894 3.106 18 H -0.216 1.216 19 H -0.183 1.183 20 H -0.153 1.153 21 C -0.017 4.017 22 H 0.128 0.872 23 H 0.121 0.879 24 H 0.122 0.878 25 H 0.106 0.894 26 H 0.133 0.867 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.140 0.860 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.069 12.836 -11.155 18.823 hybrid contribution -0.227 1.212 2.119 2.451 sum -8.296 14.048 -9.036 18.650 Atomic orbital electron populations 1.21885 0.87174 1.06423 1.06300 1.21338 0.91976 0.80469 0.73707 1.90709 1.72177 1.32014 1.52995 1.49820 1.09011 1.06204 1.73165 1.23376 0.84397 0.90391 1.02813 1.24937 0.94248 0.83302 0.99995 1.86643 1.71158 1.23083 1.44357 1.24521 0.75084 0.84645 0.83313 1.90526 1.47601 1.82438 1.22487 1.19032 0.94905 0.87182 0.98343 0.90069 1.21992 0.94987 1.01825 1.00475 1.21948 1.48077 0.98803 0.96744 0.95864 1.27336 0.90714 0.93919 1.08749 1.70977 1.41067 1.41387 1.02387 0.83721 0.79328 0.76606 0.70915 1.21616 1.18321 1.15345 1.23832 0.96827 0.77484 1.03554 0.87248 0.87949 0.87795 0.89441 0.86720 0.88094 0.92083 0.90158 0.94555 0.93835 0.85976 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 10.14 71.23 0.72 -1.27 16 2 C 0.53 12.23 8.17 87.66 0.72 12.94 16 3 O -0.60 -19.39 17.83 -3.04 -0.05 -19.44 16 4 N -0.64 -13.74 3.61 -840.43 -3.04 -16.78 16 5 C 0.11 2.49 8.68 86.49 0.75 3.24 16 6 C 0.03 0.81 4.41 31.24 0.14 0.95 16 7 O -0.34 -10.55 10.18 -51.39 -0.52 -11.07 16 8 C 0.48 19.88 7.24 71.24 0.52 20.40 16 9 O -0.54 -26.45 14.66 21.97 0.32 -26.12 16 10 C 0.03 1.10 2.34 -12.28 -0.03 1.07 16 11 H 0.08 3.19 6.71 -2.39 -0.02 3.18 16 12 C -0.14 -5.12 8.85 71.98 0.64 -4.49 16 13 C -0.62 -34.67 8.57 25.60 0.22 -34.45 16 14 H 0.02 1.51 7.02 -2.91 -0.02 1.49 16 15 C -0.01 -0.43 5.19 84.66 0.44 0.01 16 16 N -0.92 -56.66 13.70 21.45 0.29 -56.37 16 17 Si 1.08 44.95 26.45 68.60 1.81 46.77 16 18 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 20 H -0.23 -8.02 6.15 99.48 0.61 -7.41 16 21 C 0.10 1.90 8.25 86.43 0.71 2.61 16 22 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 24 H 0.10 0.83 7.85 -2.39 -0.02 0.81 16 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.10 3.01 7.11 -2.39 -0.02 2.99 16 28 H 0.06 2.36 5.48 -2.39 -0.01 2.34 16 29 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.25 16.00 8.73 -92.71 -0.81 15.19 16 32 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -75.48 286.67 4.62 -70.86 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.98 Total: 11.14 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 4.82 Total: 1.01 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -2.74 Total: -73.15 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -0.26 Total: -56.64 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.81 Total: 46.77 kcal Total: -75.48 4.62 -70.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851076535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.403 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds