Wall clock time and date at job start Mon Mar 30 2020 03:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47266 * 2 1 4 4 C 1.50704 * 109.47182 * 120.00236 * 2 1 3 5 5 H 1.07995 * 119.99896 * 119.99995 * 4 2 1 6 6 C 1.37875 * 119.99698 * 299.99774 * 4 2 1 7 7 N 1.31513 * 120.00349 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99832 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47053 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47428 * 119.99933 * 8 6 4 11 11 H 1.48496 * 109.47201 * 240.00505 * 8 6 4 12 12 N 1.46502 * 109.47245 * 240.00015 * 2 1 3 13 13 C 1.46496 * 120.00055 * 300.00293 * 12 2 1 14 14 C 1.34784 * 119.99861 * 119.99772 * 12 2 1 15 15 O 1.21583 * 119.99921 * 4.14484 * 14 12 2 16 16 C 1.47611 * 119.99807 * 184.14131 * 14 12 2 17 17 N 1.31870 * 126.46436 * 4.72723 * 16 14 12 18 18 N 1.28457 * 110.16103 * 179.97438 * 17 16 14 19 19 H 0.97007 * 124.93842 * 180.02562 * 18 17 16 20 20 C 1.35736 * 110.13232 * 0.02562 * 18 17 16 21 21 C 1.35537 * 107.11684 * 359.72246 * 20 18 17 22 22 F 1.35098 * 127.24944 * 180.29660 * 21 20 18 23 23 H 1.09002 * 109.47048 * 59.99753 * 1 2 3 24 24 H 1.08996 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47039 * 299.99625 * 1 2 3 26 26 H 0.96994 * 119.99803 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47098 * 264.21227 * 13 12 2 28 28 H 1.09003 * 109.46993 * 144.21161 * 13 12 2 29 29 H 1.08999 * 109.47461 * 24.20985 * 13 12 2 30 30 H 1.08001 * 126.43643 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1484 -2.2857 3.6037 10 1 3.1473 -0.1860 4.8160 11 1 1.1679 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.1491 1.1043 -1.8544 16 6 3.2097 -0.7020 -3.3329 17 7 2.8299 -1.8941 -3.7495 18 7 3.3817 -2.1655 -4.8773 19 1 3.2506 -2.9868 -5.3766 20 6 4.1748 -1.1360 -5.2691 21 6 4.0879 -0.1792 -4.3131 22 9 4.7099 1.0200 -4.2974 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.7082 1.1607 3.4844 27 1 2.4657 -2.7353 -1.0626 28 1 1.5231 -2.2604 -2.4959 29 1 0.7410 -2.3273 -0.8983 30 1 4.7614 -1.0868 -6.1747 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900568070.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:11 Heat of formation + Delta-G solvation = 11.731272 kcal Electronic energy + Delta-G solvation = -17378.366346 eV Core-core repulsion = 14318.934483 eV Total energy + Delta-G solvation = -3059.431863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.45942 -42.59827 -38.70230 -35.28039 -32.95215 -31.65188 -30.56454 -29.12431 -26.06815 -25.17860 -23.99873 -21.92736 -20.69338 -19.14000 -18.08406 -16.59216 -16.32076 -16.08926 -15.76162 -15.27995 -14.91400 -14.44054 -14.25078 -14.01916 -13.07460 -12.71865 -12.48521 -12.17377 -11.71532 -11.44173 -11.02710 -10.76867 -10.72231 -10.28779 -10.19574 -10.11630 -9.50023 -9.22468 -9.07023 -8.90979 -8.38890 -7.51251 -6.02371 -4.09738 1.58501 1.94654 2.65246 3.29974 3.37657 3.41250 3.76813 3.92070 4.38082 4.46573 4.64468 4.84906 5.16167 5.28816 5.41586 6.07577 6.25495 6.41142 6.54422 6.77197 6.84123 6.91808 7.10162 7.48892 7.55224 7.71180 7.76567 8.06480 8.23963 8.55546 8.87096 9.05680 9.56319 11.03173 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.036928 B = 0.006467 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.046451 B = 4328.499525 C = 4477.612577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.065 0.935 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.574 5.574 13 C 0.076 3.924 14 C 0.580 3.420 15 O -0.536 6.536 16 C -0.009 4.009 17 N -0.233 5.233 18 N -0.382 5.382 19 H 0.452 0.548 20 C -0.044 4.044 21 C 0.033 3.967 22 F -0.102 7.102 23 H 0.012 0.988 24 H 0.031 0.969 25 H 0.095 0.905 26 H 0.262 0.738 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 -8.045 -15.265 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.083 0.917 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.304 5.304 13 C -0.068 4.068 14 C 0.363 3.637 15 O -0.412 6.412 16 C -0.172 4.172 17 N -0.069 5.069 18 N -0.097 5.097 19 H 0.297 0.703 20 C -0.189 4.189 21 C 0.003 3.997 22 F -0.080 7.080 23 H 0.031 0.969 24 H 0.050 0.950 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 2.476 -8.141 -14.641 16.934 hybrid contribution 0.905 -0.166 0.314 0.972 sum 3.381 -8.307 -14.327 16.903 Atomic orbital electron populations 1.22103 0.97959 0.99520 1.00937 1.19043 0.90988 0.94584 0.79751 0.91718 1.21356 1.31641 1.12929 0.90176 0.92151 1.24891 0.94994 0.95001 0.98948 1.69888 1.36511 1.22688 1.23618 0.86425 0.78571 0.79584 0.82723 1.19843 1.20910 1.20952 1.48115 1.47532 1.12082 1.22665 1.21990 1.00686 0.82097 1.02003 1.16872 0.79977 0.85458 0.81346 1.90796 1.56213 1.17606 1.76602 1.22731 1.02328 0.92746 0.99392 1.73905 1.18640 1.15896 0.98488 1.43236 1.33323 1.16805 1.16334 0.70284 1.22575 1.03467 0.90140 1.02746 1.17240 1.00790 0.84965 0.96716 1.91526 1.80047 1.40253 1.96198 0.96871 0.94961 0.88665 0.92756 0.93802 0.89704 0.91086 0.78939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.96 37.16 0.33 -3.27 16 2 C 0.26 6.82 2.63 -69.08 -0.18 6.63 16 3 H 0.07 1.97 6.91 -51.93 -0.36 1.61 16 4 C -0.52 -14.60 8.37 -34.44 -0.29 -14.88 16 5 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.57 -13.25 2.75 -176.46 -0.49 -13.74 16 13 C 0.08 1.43 9.04 59.84 0.54 1.97 16 14 C 0.58 13.43 7.67 -12.43 -0.10 13.33 16 15 O -0.54 -14.37 16.01 5.29 0.08 -14.29 16 16 C -0.01 -0.17 6.86 -82.74 -0.57 -0.74 16 17 N -0.23 -3.35 8.65 33.43 0.29 -3.06 16 18 N -0.38 -3.60 6.86 30.64 0.21 -3.39 16 19 H 0.45 2.03 8.96 -190.44 -1.71 0.32 16 20 C -0.04 -0.44 12.06 -16.79 -0.20 -0.64 16 21 C 0.03 0.52 8.03 -39.26 -0.32 0.20 16 22 F -0.10 -1.80 17.04 2.25 0.04 -1.76 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.03 0.73 6.67 -51.93 -0.35 0.38 16 25 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.39 5.01 -51.93 -0.26 1.12 16 29 H 0.07 1.32 6.44 -51.93 -0.33 0.98 16 30 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 262.76 15.07 3.96 3.96 Total: -1.00 -34.29 262.76 -5.29 -39.59 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.13 Total: -3.11 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -0.87 Total: 4.28 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.64 Total: -45.15 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.29 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -34.29 -5.29 -39.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568070.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.318 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds