Wall clock time and date at job start Mon Mar 30 2020 03:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47266 * 2 1 4 4 C 1.50704 * 109.47182 * 120.00236 * 2 1 3 5 5 H 1.07995 * 119.99896 * 119.99995 * 4 2 1 6 6 C 1.37875 * 119.99698 * 299.99774 * 4 2 1 7 7 N 1.31513 * 120.00349 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99832 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47053 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47428 * 119.99933 * 8 6 4 11 11 H 1.48496 * 109.47201 * 240.00505 * 8 6 4 12 12 N 1.46502 * 109.47245 * 240.00015 * 2 1 3 13 13 C 1.46496 * 120.00055 * 300.00293 * 12 2 1 14 14 C 1.34784 * 119.99861 * 119.99772 * 12 2 1 15 15 O 1.21583 * 119.99921 * 4.14484 * 14 12 2 16 16 C 1.47611 * 119.99807 * 184.14131 * 14 12 2 17 17 N 1.31870 * 126.46436 * 4.72723 * 16 14 12 18 18 N 1.28457 * 110.16103 * 179.97438 * 17 16 14 19 19 H 0.97007 * 124.93842 * 180.02562 * 18 17 16 20 20 C 1.35736 * 110.13232 * 0.02562 * 18 17 16 21 21 C 1.35537 * 107.11684 * 359.72246 * 20 18 17 22 22 F 1.35098 * 127.24944 * 180.29660 * 21 20 18 23 23 H 1.09002 * 109.47048 * 59.99753 * 1 2 3 24 24 H 1.08996 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47039 * 299.99625 * 1 2 3 26 26 H 0.96994 * 119.99803 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47098 * 264.21227 * 13 12 2 28 28 H 1.09003 * 109.46993 * 144.21161 * 13 12 2 29 29 H 1.08999 * 109.47461 * 24.20985 * 13 12 2 30 30 H 1.08001 * 126.43643 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1484 -2.2857 3.6037 10 1 3.1473 -0.1860 4.8160 11 1 1.1679 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.1491 1.1043 -1.8544 16 6 3.2097 -0.7020 -3.3329 17 7 2.8299 -1.8941 -3.7495 18 7 3.3817 -2.1655 -4.8773 19 1 3.2506 -2.9868 -5.3766 20 6 4.1748 -1.1360 -5.2691 21 6 4.0879 -0.1792 -4.3131 22 9 4.7099 1.0200 -4.2974 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.7082 1.1607 3.4844 27 1 2.4657 -2.7353 -1.0626 28 1 1.5231 -2.2604 -2.4959 29 1 0.7410 -2.3273 -0.8983 30 1 4.7614 -1.0868 -6.1747 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900568070.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:11 Heat of formation + Delta-G solvation = -13.911295 kcal Electronic energy + Delta-G solvation = -17379.478291 eV Core-core repulsion = 14318.934483 eV Total energy + Delta-G solvation = -3060.543808 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.67177 -43.68472 -40.49321 -37.20570 -34.90550 -33.01180 -31.69848 -30.94186 -27.70118 -27.31209 -25.51040 -23.06993 -22.32964 -20.49841 -19.44811 -18.53614 -17.87338 -17.41770 -17.18920 -16.91524 -16.20011 -16.03508 -15.96133 -15.38057 -14.82526 -14.46993 -14.10684 -13.78262 -13.51312 -13.00803 -12.93313 -12.73704 -12.67650 -12.21246 -12.12526 -11.64271 -11.19445 -10.99508 -10.60545 -10.53975 -10.01220 -9.35958 -8.15397 -6.32228 0.36366 0.85505 1.40624 1.42359 1.54119 1.78152 2.19990 2.31288 2.45251 3.08394 3.12252 3.62150 3.83552 3.92220 4.44520 4.54583 4.76801 4.81080 4.88338 5.03630 5.05850 5.26693 5.43412 5.60198 5.65259 5.96028 6.06061 6.13844 6.61822 6.73198 6.77003 7.21844 7.41291 8.89643 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.036928 B = 0.006467 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.046451 B = 4328.499525 C = 4477.612577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.258 3.742 3 H 0.011 0.989 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.968 3.032 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.582 5.582 13 C 0.080 3.920 14 C 0.569 3.431 15 O -0.592 6.592 16 C -0.050 4.050 17 N -0.232 5.232 18 N -0.344 5.344 19 H 0.478 0.522 20 C 0.016 3.984 21 C -0.015 4.015 22 F -0.123 7.123 23 H 0.021 0.979 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.266 0.734 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -10.960 -17.239 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.157 3.843 3 H 0.029 0.971 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.793 3.207 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.312 5.312 13 C -0.063 4.063 14 C 0.356 3.644 15 O -0.473 6.473 16 C -0.209 4.209 17 N -0.070 5.070 18 N -0.063 5.063 19 H 0.330 0.670 20 C -0.130 4.130 21 C -0.045 4.045 22 F -0.102 7.102 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 2.990 -11.126 -16.644 20.242 hybrid contribution 0.769 0.680 0.777 1.288 sum 3.759 -10.446 -15.866 19.365 Atomic orbital electron populations 1.21884 0.96546 1.00390 1.00186 1.18688 0.92031 0.92264 0.81334 0.97113 1.21561 1.32058 1.13042 0.91128 0.92415 1.25756 0.95012 0.95659 1.02022 1.70023 1.37211 1.23839 1.24507 0.85354 0.78295 0.78387 0.78647 1.19152 1.20977 1.19561 1.48116 1.47677 1.13604 1.21763 1.22170 1.00632 0.79512 1.03963 1.17548 0.79011 0.85071 0.82767 1.90738 1.58175 1.20122 1.78219 1.21978 1.05510 0.94770 0.98690 1.73670 1.18991 1.14113 1.00272 1.43412 1.30936 1.17480 1.14491 0.66962 1.23285 1.00697 0.87065 1.01982 1.17736 1.02395 0.85945 0.98407 1.91460 1.80525 1.41769 1.96422 0.95995 0.93098 0.90951 0.92482 0.93490 0.86885 0.91026 0.72979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 8.96 71.98 0.64 -6.01 16 2 C 0.26 14.40 2.63 44.24 0.12 14.52 16 3 H 0.01 0.72 6.91 -2.38 -0.02 0.70 16 4 C -0.54 -30.96 8.37 25.60 0.21 -30.74 16 5 H 0.06 3.26 7.65 -2.91 -0.02 3.24 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -54.30 11.32 21.45 0.24 -54.05 16 8 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 N -0.58 -27.74 2.75 -830.46 -2.29 -30.03 16 13 C 0.08 2.93 9.04 127.77 1.15 4.09 16 14 C 0.57 27.55 7.67 86.72 0.67 28.21 16 15 O -0.59 -34.13 16.01 -3.98 -0.06 -34.20 16 16 C -0.05 -1.80 6.86 42.45 0.29 -1.51 16 17 N -0.23 -6.00 8.65 -48.15 -0.42 -6.42 16 18 N -0.34 -4.72 6.86 -56.99 -0.39 -5.12 16 19 H 0.48 1.27 8.96 -219.99 -1.97 -0.70 16 20 C 0.02 0.24 12.06 83.46 1.01 1.25 16 21 C -0.02 -0.45 8.03 22.48 0.18 -0.27 16 22 F -0.12 -4.40 17.04 44.97 0.77 -3.64 16 23 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 2.32 6.67 -2.39 -0.02 2.30 16 25 H 0.07 4.00 6.07 -2.38 -0.01 3.98 16 26 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.11 3.48 5.01 -2.39 -0.01 3.47 16 29 H 0.07 2.59 6.44 -2.39 -0.02 2.57 16 30 H 0.25 0.71 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -81.59 262.76 3.82 -77.77 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -0.78 Total: -1.60 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 4.72 Total: 10.83 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -2.85 Total: -95.61 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.06 Total: -34.20 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.77 Total: -3.64 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -81.59 3.82 -77.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568070.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.861 kcal (2) G-P(sol) polarization free energy of solvation -81.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds