Wall clock time and date at job start Mon Mar 30 2020 04:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47126 * 2 1 4 4 C 1.34232 * 117.00358 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99698 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00297 * 180.02562 * 4 3 2 7 7 H 1.09000 * 112.90782 * 79.99530 * 6 4 3 8 8 C 1.53779 * 113.61347 * 308.74828 * 6 4 3 9 9 C 1.53782 * 87.17354 * 220.06234 * 8 6 4 10 10 C 1.53780 * 87.07910 * 25.39078 * 9 8 6 11 11 H 1.09004 * 113.61193 * 219.93564 * 10 9 8 12 12 C 1.50693 * 113.61359 * 89.12098 * 10 9 8 13 13 O 1.21293 * 120.00067 * 330.48440 * 12 10 9 14 14 N 1.34783 * 120.00146 * 150.48995 * 12 10 9 15 15 C 1.37093 * 119.99969 * 179.97438 * 14 12 10 16 16 H 1.07999 * 120.00389 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99792 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00076 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47026 * 60.00540 * 19 17 15 21 21 H 1.48501 * 109.47221 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47440 * 300.00643 * 19 17 15 23 23 H 1.09005 * 109.46805 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47050 * 299.99493 * 1 2 3 25 25 H 1.09000 * 109.47332 * 60.00146 * 1 2 3 26 26 H 1.09008 * 109.47312 * 240.00630 * 2 1 3 27 27 H 1.08999 * 109.47537 * 120.00611 * 2 1 3 28 28 H 1.09004 * 113.61930 * 105.46760 * 8 6 4 29 29 H 1.09005 * 113.61734 * 334.64695 * 8 6 4 30 30 H 1.08999 * 113.61784 * 139.94403 * 9 8 6 31 31 H 1.09006 * 113.60825 * 270.75707 * 9 8 6 32 32 H 0.96996 * 119.99639 * 359.97438 * 14 12 10 33 33 H 0.96997 * 120.00183 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.9213 3.3959 0.9901 8 6 3.3416 3.8440 -1.0977 9 6 4.7667 4.3874 -1.2943 10 6 5.2705 3.0482 -0.7309 11 1 6.1254 3.1497 -0.0622 12 6 5.4733 1.9886 -1.7831 13 8 4.7929 1.9930 -2.7872 14 7 6.4106 1.0360 -1.6084 15 6 6.5947 0.0718 -2.5654 16 1 5.9890 0.0758 -3.4595 17 6 7.5615 -0.9100 -2.3855 18 7 8.2989 -0.9145 -1.2978 19 14 7.8118 -2.2242 -3.6891 20 1 8.1880 -1.5816 -4.9740 21 1 8.8942 -3.1464 -3.2609 22 1 6.5521 -2.9897 -3.8688 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.6381 4.5882 -0.7242 29 1 2.9603 3.2965 -1.9597 30 1 5.0321 4.5492 -2.3391 31 1 4.9985 5.2440 -0.6612 32 1 6.9549 1.0327 -0.8055 33 1 8.9735 -1.6000 -1.1721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906480343.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:50 Heat of formation + Delta-G solvation = -107.589252 kcal Electronic energy + Delta-G solvation = -17918.400896 eV Core-core repulsion = 14944.962461 eV Total energy + Delta-G solvation = -2973.438435 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.55458 -38.77069 -36.43419 -35.92378 -33.71585 -31.53179 -31.09565 -26.99526 -26.55695 -24.22266 -23.02948 -21.15205 -20.51155 -18.39391 -17.65625 -17.27710 -16.38479 -16.10916 -15.45502 -14.80714 -14.30535 -13.79134 -13.63874 -13.46235 -13.20878 -12.78906 -12.39851 -12.11329 -11.79034 -11.55477 -11.47193 -11.32075 -11.10673 -10.92374 -10.46808 -10.39778 -10.18518 -10.16325 -10.03038 -9.64739 -9.39125 -8.25145 -7.83993 -6.32613 -3.70467 2.77880 3.04418 3.24339 3.29544 3.34363 3.84765 4.23111 4.65241 4.87051 4.92734 5.08428 5.08898 5.15054 5.25498 5.45981 5.50588 5.57880 5.73111 5.86067 5.91676 6.00850 6.04984 6.08363 6.30480 6.36182 6.42011 6.77889 6.89632 7.62757 8.15320 8.30282 8.71578 9.26514 9.67262 10.18143 10.85171 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.008207 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.371149 B = 3410.712657 C = 4204.913983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.462 3.538 5 O -0.475 6.475 6 C -0.093 4.093 7 H 0.126 0.874 8 C -0.115 4.115 9 C -0.122 4.122 10 C -0.105 4.105 11 H 0.089 0.911 12 C 0.456 3.544 13 O -0.601 6.601 14 N -0.537 5.537 15 C -0.293 4.293 16 H 0.100 0.900 17 C 0.023 3.977 18 N -0.898 5.898 19 Si 0.929 3.071 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.275 1.275 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.393 0.607 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.069 6.522 5.507 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.303 3.697 5 O -0.359 6.359 6 C -0.113 4.113 7 H 0.144 0.856 8 C -0.153 4.153 9 C -0.159 4.159 10 C -0.127 4.127 11 H 0.107 0.893 12 C 0.242 3.758 13 O -0.488 6.488 14 N -0.170 5.170 15 C -0.423 4.423 16 H 0.118 0.882 17 C -0.179 4.179 18 N -0.539 5.539 19 Si 0.756 3.244 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.200 1.200 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.226 0.774 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.125 6.022 4.898 12.757 hybrid contribution 0.597 -1.004 0.057 1.170 sum -9.528 5.017 4.954 11.853 Atomic orbital electron populations 1.21772 0.93103 1.02559 1.03133 1.22931 0.94814 0.80958 1.02662 1.86450 1.25125 1.31714 1.84694 1.23516 0.80493 0.92588 0.73080 1.90817 1.59852 1.42359 1.42861 1.22500 0.97174 0.90260 1.01379 0.85643 1.22858 0.96788 0.97630 0.97974 1.22692 0.95910 0.94910 1.02429 1.22373 0.95856 0.96810 0.97667 0.89258 1.19028 0.84414 0.84543 0.87839 1.90482 1.49871 1.77398 1.31086 1.41707 1.31377 1.23623 1.20270 1.19623 1.17397 1.04607 1.00656 0.88219 1.25252 0.96247 0.98773 0.97579 1.69618 1.22542 1.35513 1.26200 0.85949 0.77894 0.80136 0.80384 1.19925 1.20958 1.20016 0.90604 0.91839 0.91577 0.91138 0.91653 0.91124 0.88173 0.90014 0.89869 0.77384 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 37.16 0.38 -1.24 16 2 C 0.06 0.92 6.19 37.16 0.23 1.15 16 3 O -0.36 -6.28 10.13 -39.26 -0.40 -6.67 16 4 C 0.46 9.08 6.77 36.00 0.24 9.32 16 5 O -0.47 -11.30 14.62 -18.75 -0.27 -11.57 16 6 C -0.09 -1.52 4.21 -90.87 -0.38 -1.90 16 7 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 8 C -0.12 -1.76 7.13 -25.92 -0.18 -1.94 16 9 C -0.12 -1.84 7.45 -25.92 -0.19 -2.03 16 10 C -0.11 -1.95 4.16 -90.87 -0.38 -2.33 16 11 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 12 C 0.46 11.37 4.90 -10.99 -0.05 11.32 16 13 O -0.60 -16.72 14.80 5.55 0.08 -16.63 16 14 N -0.54 -14.65 4.90 -10.96 -0.05 -14.71 16 15 C -0.29 -8.64 9.68 -14.93 -0.14 -8.79 16 16 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -25.72 13.05 55.50 0.72 -24.99 16 19 Si 0.93 22.03 29.55 -169.99 -5.02 17.00 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 27 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.10 1.84 7.13 -51.93 -0.37 1.47 16 30 H 0.08 1.37 7.97 -51.93 -0.41 0.95 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.39 10.52 7.90 -40.82 -0.32 10.20 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 286.37 15.07 4.32 4.32 Total: -1.00 -34.20 286.37 -5.62 -39.83 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.42 Total: 9.32 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -0.58 Total: 4.11 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.67 Total: -39.70 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.59 Total: -34.88 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.20 -5.62 -39.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906480343.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.763 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds