Wall clock time and date at job start Mon Mar 30 2020 04:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47126 * 2 1 4 4 C 1.34232 * 117.00358 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99698 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00297 * 180.02562 * 4 3 2 7 7 H 1.09000 * 112.90782 * 79.99530 * 6 4 3 8 8 C 1.53779 * 113.61347 * 308.74828 * 6 4 3 9 9 C 1.53782 * 87.17354 * 220.06234 * 8 6 4 10 10 C 1.53780 * 87.07910 * 25.39078 * 9 8 6 11 11 H 1.09004 * 113.61193 * 219.93564 * 10 9 8 12 12 C 1.50693 * 113.61359 * 89.12098 * 10 9 8 13 13 O 1.21293 * 120.00067 * 330.48440 * 12 10 9 14 14 N 1.34783 * 120.00146 * 150.48995 * 12 10 9 15 15 C 1.37093 * 119.99969 * 179.97438 * 14 12 10 16 16 H 1.07999 * 120.00389 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99792 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00076 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47026 * 60.00540 * 19 17 15 21 21 H 1.48501 * 109.47221 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47440 * 300.00643 * 19 17 15 23 23 H 1.09005 * 109.46805 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47050 * 299.99493 * 1 2 3 25 25 H 1.09000 * 109.47332 * 60.00146 * 1 2 3 26 26 H 1.09008 * 109.47312 * 240.00630 * 2 1 3 27 27 H 1.08999 * 109.47537 * 120.00611 * 2 1 3 28 28 H 1.09004 * 113.61930 * 105.46760 * 8 6 4 29 29 H 1.09005 * 113.61734 * 334.64695 * 8 6 4 30 30 H 1.08999 * 113.61784 * 139.94403 * 9 8 6 31 31 H 1.09006 * 113.60825 * 270.75707 * 9 8 6 32 32 H 0.96996 * 119.99639 * 359.97438 * 14 12 10 33 33 H 0.96997 * 120.00183 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.9213 3.3959 0.9901 8 6 3.3416 3.8440 -1.0977 9 6 4.7667 4.3874 -1.2943 10 6 5.2705 3.0482 -0.7309 11 1 6.1254 3.1497 -0.0622 12 6 5.4733 1.9886 -1.7831 13 8 4.7929 1.9930 -2.7872 14 7 6.4106 1.0360 -1.6084 15 6 6.5947 0.0718 -2.5654 16 1 5.9890 0.0758 -3.4595 17 6 7.5615 -0.9100 -2.3855 18 7 8.2989 -0.9145 -1.2978 19 14 7.8118 -2.2242 -3.6891 20 1 8.1880 -1.5816 -4.9740 21 1 8.8942 -3.1464 -3.2609 22 1 6.5521 -2.9897 -3.8688 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.6381 4.5882 -0.7242 29 1 2.9603 3.2965 -1.9597 30 1 5.0321 4.5492 -2.3391 31 1 4.9985 5.2440 -0.6612 32 1 6.9549 1.0327 -0.8055 33 1 8.9735 -1.6000 -1.1721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906480343.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:50 Heat of formation + Delta-G solvation = -131.619660 kcal Electronic energy + Delta-G solvation = -17919.442932 eV Core-core repulsion = 14944.962461 eV Total energy + Delta-G solvation = -2974.480472 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.07493 -40.40209 -38.15899 -37.47098 -35.84064 -33.25185 -32.65011 -28.43396 -28.16226 -26.09571 -24.17444 -22.59326 -22.12628 -20.29941 -19.52509 -18.84590 -17.91296 -17.58735 -17.16067 -16.40936 -16.10367 -15.65927 -15.26211 -14.87569 -14.83944 -13.99718 -13.79641 -13.66161 -13.48348 -13.08711 -12.94278 -12.81543 -12.52447 -12.47793 -12.35877 -12.17019 -11.81512 -11.53916 -11.49527 -11.34239 -11.14139 -10.23459 -9.99329 -8.48130 -5.95096 1.25118 1.34341 1.34968 1.46878 1.71205 2.00553 2.26728 3.06632 3.20189 3.45393 3.63330 3.83655 3.94213 3.97796 4.08592 4.17071 4.30742 4.52869 4.58310 4.76491 4.82865 4.89515 4.91768 5.07245 5.12001 5.14687 5.35333 5.49581 5.52586 5.98805 6.57868 6.80449 7.10498 7.58208 8.12532 8.69790 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.008207 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.371149 B = 3410.712657 C = 4204.913983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.454 3.546 5 O -0.529 6.529 6 C -0.085 4.085 7 H 0.181 0.819 8 C -0.110 4.110 9 C -0.105 4.105 10 C -0.122 4.122 11 H 0.111 0.889 12 C 0.455 3.545 13 O -0.638 6.638 14 N -0.553 5.553 15 C -0.331 4.331 16 H 0.074 0.926 17 C -0.016 4.016 18 N -0.920 5.920 19 Si 0.993 3.007 20 H -0.267 1.267 21 H -0.266 1.266 22 H -0.276 1.276 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.138 0.862 32 H 0.392 0.608 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 7.944 6.749 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 O -0.273 6.273 4 C 0.298 3.702 5 O -0.417 6.417 6 C -0.104 4.104 7 H 0.198 0.802 8 C -0.147 4.147 9 C -0.142 4.142 10 C -0.143 4.143 11 H 0.129 0.871 12 C 0.243 3.757 13 O -0.527 6.527 14 N -0.186 5.186 15 C -0.460 4.460 16 H 0.092 0.908 17 C -0.215 4.215 18 N -0.561 5.561 19 Si 0.816 3.184 20 H -0.192 1.192 21 H -0.190 1.190 22 H -0.202 1.202 23 H 0.116 0.884 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.225 0.775 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.008 7.474 6.153 14.659 hybrid contribution 0.782 -1.423 -0.321 1.655 sum -10.227 6.051 5.832 13.237 Atomic orbital electron populations 1.21779 0.89264 1.04371 1.04017 1.23197 0.97789 0.79955 1.01295 1.86460 1.24082 1.32798 1.83989 1.24385 0.80828 0.93589 0.71439 1.90804 1.61027 1.44332 1.45543 1.22816 0.94828 0.88559 1.04163 0.80162 1.22796 0.97971 0.97836 0.96124 1.22793 0.94894 0.94472 1.02046 1.22461 0.98443 0.96580 0.96843 0.87100 1.20197 0.82346 0.84685 0.88498 1.90447 1.50652 1.78442 1.33184 1.41798 1.32554 1.24296 1.19973 1.19587 1.18574 1.06857 1.01030 0.90829 1.26089 0.95363 1.00283 0.99765 1.69687 1.22730 1.36262 1.27384 0.85006 0.78029 0.77433 0.77919 1.19167 1.19025 1.20193 0.88354 0.90022 0.91517 0.94192 0.91492 0.86403 0.92384 0.92277 0.84417 0.77488 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 10.29 71.98 0.74 -2.04 16 2 C 0.05 1.59 6.19 71.98 0.45 2.03 16 3 O -0.36 -12.19 10.13 -51.43 -0.52 -12.71 16 4 C 0.45 17.75 6.77 71.24 0.48 18.23 16 5 O -0.53 -26.03 14.62 21.97 0.32 -25.71 16 6 C -0.08 -2.53 4.21 -10.96 -0.05 -2.57 16 7 H 0.18 3.45 8.14 -2.39 -0.02 3.43 16 8 C -0.11 -3.04 7.13 31.12 0.22 -2.81 16 9 C -0.10 -2.83 7.45 31.12 0.23 -2.60 16 10 C -0.12 -4.34 4.16 -10.96 -0.05 -4.38 16 11 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 12 C 0.45 23.34 4.90 87.65 0.43 23.76 16 13 O -0.64 -37.10 14.80 -3.07 -0.05 -37.15 16 14 N -0.55 -31.41 4.90 -306.98 -1.50 -32.91 16 15 C -0.33 -20.42 9.68 84.04 0.81 -19.61 16 16 H 0.07 4.81 7.16 -2.91 -0.02 4.79 16 17 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 18 N -0.92 -53.54 13.05 21.66 0.28 -53.25 16 19 Si 0.99 45.92 29.55 68.60 2.03 47.95 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 28 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.12 7.13 -2.38 -0.02 2.10 16 30 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 31 H 0.14 2.31 8.14 -2.38 -0.02 2.30 16 32 H 0.39 21.79 7.90 -92.71 -0.73 21.06 16 33 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -79.88 286.37 4.69 -75.20 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.39 Total: 29.01 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 3.74 Total: 9.58 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -1.22 Total: -86.17 kcal Atomic # 8 Polarization: -75.32 SS G_CDS: -0.24 Total: -75.56 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.88 4.69 -75.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906480343.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.424 kcal (2) G-P(sol) polarization free energy of solvation -79.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds