Wall clock time and date at job start Mon Mar 30 2020 03:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47192 * 2 1 4 4 C 1.36936 * 120.00042 * 263.84877 * 3 2 1 5 5 H 1.08005 * 119.99632 * 187.23115 * 4 3 2 6 6 C 1.38805 * 120.00072 * 6.96138 * 4 3 2 7 7 N 1.31618 * 120.00180 * 28.75240 * 6 4 3 8 8 Si 1.86806 * 119.99832 * 208.75475 * 6 4 3 9 9 H 1.48496 * 109.47192 * 89.99934 * 8 6 4 10 10 H 1.48504 * 109.46834 * 209.99780 * 8 6 4 11 11 H 1.48499 * 109.47176 * 329.99804 * 8 6 4 12 12 C 1.46496 * 119.99932 * 83.85193 * 3 2 1 13 13 H 1.09003 * 109.47301 * 352.78853 * 12 3 2 14 14 C 1.53000 * 109.47308 * 232.78765 * 12 3 2 15 15 C 1.50700 * 109.47544 * 112.78799 * 12 3 2 16 16 S 1.72122 * 127.92222 * 47.80582 * 15 12 3 17 17 N 1.56511 * 95.88724 * 179.97438 * 16 15 12 18 18 N 1.27574 * 109.21977 * 0.02562 * 17 16 15 19 19 C 1.31741 * 118.27418 * 359.72756 * 18 17 16 20 20 C 1.50707 * 123.76640 * 180.30163 * 19 18 17 21 21 H 1.08993 * 109.47187 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47171 * 300.00113 * 1 2 3 23 23 H 1.09005 * 109.46661 * 60.00147 * 1 2 3 24 24 H 1.09005 * 109.47008 * 239.99727 * 2 1 3 25 25 H 1.09001 * 109.46816 * 120.00598 * 2 1 3 26 26 H 0.97003 * 120.00294 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47354 * 179.97438 * 14 12 3 28 28 H 1.08995 * 109.47328 * 300.00178 * 14 12 3 29 29 H 1.09003 * 109.46523 * 59.99974 * 14 12 3 30 30 H 1.08999 * 109.47200 * 270.19480 * 20 19 18 31 31 H 1.09007 * 109.47050 * 30.19914 * 20 19 18 32 32 H 1.09002 * 109.46503 * 150.19325 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3664 1.9844 -1.1791 5 1 2.8350 2.9574 -1.1701 6 6 2.1220 1.3428 -2.3855 7 7 1.1170 0.4995 -2.4906 8 14 3.2197 1.6762 -3.8597 9 1 4.3511 0.7144 -3.8621 10 1 2.4325 1.5176 -5.1089 11 1 3.7481 3.0618 -3.7802 12 6 2.1344 2.1171 1.2614 13 1 1.6965 1.5281 2.0673 14 6 1.3939 3.4507 1.1439 15 6 3.5887 2.3748 1.5608 16 16 4.7935 2.9948 0.4993 17 7 5.9613 2.9539 1.5405 18 7 5.5198 2.5030 2.6492 19 6 4.2458 2.1766 2.7273 20 6 3.5936 1.6393 3.9752 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 0.9464 0.0508 -3.3336 27 1 1.4798 3.9980 2.0826 28 1 1.8317 4.0397 0.3381 29 1 0.3419 3.2642 0.9274 30 1 3.6669 0.5519 3.9840 31 1 4.0983 2.0448 4.8522 32 1 2.5441 1.9330 3.9917 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929464589.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:18 Heat of formation + Delta-G solvation = 88.137590 kcal Electronic energy + Delta-G solvation = -15913.218484 eV Core-core repulsion = 13423.313024 eV Total energy + Delta-G solvation = -2489.905460 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.18296 -36.93434 -33.51428 -31.65303 -30.55354 -28.14905 -27.10556 -25.98294 -24.36555 -22.05156 -20.72196 -19.44109 -17.79044 -16.63748 -15.41679 -15.01963 -14.71476 -13.91561 -13.62586 -13.13212 -12.75133 -12.67906 -12.33801 -12.20684 -11.95570 -11.63803 -11.37252 -11.02022 -11.01571 -10.88200 -10.67026 -10.50115 -10.11231 -9.90105 -9.56571 -9.24314 -8.94834 -8.75590 -8.49214 -7.17525 -6.03636 -3.26302 0.98019 1.94348 2.52749 2.83069 3.30060 3.38287 3.40654 4.33024 4.70044 5.02840 5.13531 5.43951 5.47512 5.77575 5.82374 5.89767 5.99740 6.10978 6.28515 6.38285 6.42676 6.55363 6.75604 6.81431 6.93020 6.98661 7.46607 7.57844 7.92191 8.10525 8.45086 8.99033 9.61779 10.06694 11.00214 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023886 B = 0.010983 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.964149 B = 2548.879446 C = 3315.613367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.163 3.837 3 N -0.583 5.583 4 C -0.261 4.261 5 H 0.082 0.918 6 C 0.016 3.984 7 N -0.875 5.875 8 Si 0.883 3.117 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.274 1.274 12 C 0.246 3.754 13 H 0.078 0.922 14 C -0.150 4.150 15 C -0.234 4.234 16 S 0.445 5.555 17 N -0.346 5.346 18 N -0.254 5.254 19 C -0.012 4.012 20 C -0.059 4.059 21 H 0.023 0.977 22 H 0.014 0.986 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.006 0.994 26 H 0.257 0.743 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 2.049 6.827 7.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 N -0.303 5.303 4 C -0.391 4.391 5 H 0.099 0.901 6 C -0.185 4.185 7 N -0.518 5.518 8 Si 0.711 3.289 9 H -0.211 1.211 10 H -0.217 1.217 11 H -0.199 1.199 12 C 0.134 3.866 13 H 0.096 0.904 14 C -0.210 4.210 15 C -0.375 4.375 16 S 0.584 5.416 17 N -0.324 5.324 18 N -0.121 5.121 19 C -0.158 4.158 20 C -0.120 4.120 21 H 0.042 0.958 22 H 0.033 0.967 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.568 2.591 5.891 6.624 hybrid contribution -0.586 -0.563 -0.007 0.812 sum 0.982 2.029 5.885 6.301 Atomic orbital electron populations 1.22269 0.98739 0.98528 1.01293 1.20841 0.92760 0.83944 0.98598 1.44391 1.74441 1.10672 1.00755 1.19136 1.33485 1.03096 0.83417 0.90062 1.24698 0.97214 0.99225 0.97332 1.70181 1.24864 1.31320 1.25441 0.86576 0.81361 0.78626 0.82329 1.21127 1.21677 1.19859 1.18586 0.84400 0.93462 0.90158 0.90391 1.22209 1.01197 0.97292 1.00303 1.28478 1.07145 1.05221 0.96642 1.81938 0.94044 1.44741 1.20917 1.78493 1.28062 1.23576 1.02223 1.71138 1.12724 1.12719 1.15527 1.22063 0.89789 1.05888 0.98063 1.20121 0.99418 1.00647 0.91816 0.95822 0.96727 0.89109 0.89453 0.97525 0.93276 0.93972 0.92179 0.91812 0.90931 0.90954 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.77 37.16 0.36 -2.74 16 2 C 0.16 3.59 5.52 -4.04 -0.02 3.56 16 3 N -0.58 -12.80 2.46 -166.98 -0.41 -13.22 16 4 C -0.26 -6.20 7.72 -15.06 -0.12 -6.32 16 5 H 0.08 1.89 5.81 -52.48 -0.30 1.59 16 6 C 0.02 0.40 4.81 -17.43 -0.08 0.31 16 7 N -0.88 -22.33 8.82 55.49 0.49 -21.84 16 8 Si 0.88 19.95 29.64 -169.99 -5.04 14.91 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.25 4.57 3.06 -69.08 -0.21 4.36 16 13 H 0.08 1.34 6.85 -51.93 -0.36 0.98 16 14 C -0.15 -2.57 9.03 37.16 0.34 -2.24 16 15 C -0.23 -4.36 5.49 -35.34 -0.19 -4.55 16 16 S 0.45 8.56 20.90 -107.50 -2.25 6.31 16 17 N -0.35 -7.01 12.54 60.35 0.76 -6.25 16 18 N -0.25 -5.05 11.68 32.45 0.38 -4.67 16 19 C -0.01 -0.22 6.89 -83.66 -0.58 -0.80 16 20 C -0.06 -0.80 9.98 36.01 0.36 -0.44 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 23 H 0.09 2.16 6.37 -51.93 -0.33 1.83 16 24 H 0.09 2.15 5.87 -51.93 -0.30 1.85 16 25 H 0.01 0.13 8.11 -51.93 -0.42 -0.29 16 26 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.09 7.04 -51.93 -0.37 0.73 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.89 7.29 -51.93 -0.38 0.51 16 LS Contribution 274.13 15.07 4.13 4.13 Total: -1.00 -26.35 274.13 -6.22 -32.57 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -4.13 Total: -3.10 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.15 Total: -8.85 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 1.21 Total: -45.97 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.04 Total: 14.91 kcal Atomic # 16 Polarization: 8.56 SS G_CDS: -2.25 Total: 6.31 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.35 -6.22 -32.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929464589.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.710 kcal (2) G-P(sol) polarization free energy of solvation -26.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds