Wall clock time and date at job start Mon Mar 30 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47192 * 2 1 4 4 C 1.36936 * 120.00042 * 263.84877 * 3 2 1 5 5 H 1.08005 * 119.99632 * 187.23115 * 4 3 2 6 6 C 1.38805 * 120.00072 * 6.96138 * 4 3 2 7 7 N 1.31618 * 120.00180 * 28.75240 * 6 4 3 8 8 Si 1.86806 * 119.99832 * 208.75475 * 6 4 3 9 9 H 1.48496 * 109.47192 * 89.99934 * 8 6 4 10 10 H 1.48504 * 109.46834 * 209.99780 * 8 6 4 11 11 H 1.48499 * 109.47176 * 329.99804 * 8 6 4 12 12 C 1.46496 * 119.99932 * 83.85193 * 3 2 1 13 13 H 1.09003 * 109.47301 * 352.78853 * 12 3 2 14 14 C 1.53000 * 109.47308 * 232.78765 * 12 3 2 15 15 C 1.50700 * 109.47544 * 112.78799 * 12 3 2 16 16 S 1.72122 * 127.92222 * 47.80582 * 15 12 3 17 17 N 1.56511 * 95.88724 * 179.97438 * 16 15 12 18 18 N 1.27574 * 109.21977 * 0.02562 * 17 16 15 19 19 C 1.31741 * 118.27418 * 359.72756 * 18 17 16 20 20 C 1.50707 * 123.76640 * 180.30163 * 19 18 17 21 21 H 1.08993 * 109.47187 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47171 * 300.00113 * 1 2 3 23 23 H 1.09005 * 109.46661 * 60.00147 * 1 2 3 24 24 H 1.09005 * 109.47008 * 239.99727 * 2 1 3 25 25 H 1.09001 * 109.46816 * 120.00598 * 2 1 3 26 26 H 0.97003 * 120.00294 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47354 * 179.97438 * 14 12 3 28 28 H 1.08995 * 109.47328 * 300.00178 * 14 12 3 29 29 H 1.09003 * 109.46523 * 59.99974 * 14 12 3 30 30 H 1.08999 * 109.47200 * 270.19480 * 20 19 18 31 31 H 1.09007 * 109.47050 * 30.19914 * 20 19 18 32 32 H 1.09002 * 109.46503 * 150.19325 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3664 1.9844 -1.1791 5 1 2.8350 2.9574 -1.1701 6 6 2.1220 1.3428 -2.3855 7 7 1.1170 0.4995 -2.4906 8 14 3.2197 1.6762 -3.8597 9 1 4.3511 0.7144 -3.8621 10 1 2.4325 1.5176 -5.1089 11 1 3.7481 3.0618 -3.7802 12 6 2.1344 2.1171 1.2614 13 1 1.6965 1.5281 2.0673 14 6 1.3939 3.4507 1.1439 15 6 3.5887 2.3748 1.5608 16 16 4.7935 2.9948 0.4993 17 7 5.9613 2.9539 1.5405 18 7 5.5198 2.5030 2.6492 19 6 4.2458 2.1766 2.7273 20 6 3.5936 1.6393 3.9752 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 0.9464 0.0508 -3.3336 27 1 1.4798 3.9980 2.0826 28 1 1.8317 4.0397 0.3381 29 1 0.3419 3.2642 0.9274 30 1 3.6669 0.5519 3.9840 31 1 4.0983 2.0448 4.8522 32 1 2.5441 1.9330 3.9917 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929464589.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:17 Heat of formation + Delta-G solvation = 73.557309 kcal Electronic energy + Delta-G solvation = -15913.850732 eV Core-core repulsion = 13423.313024 eV Total energy + Delta-G solvation = -2490.537708 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.68044 -38.55965 -35.07797 -33.22040 -32.15265 -29.80934 -28.37229 -27.46180 -26.09656 -23.60057 -22.38650 -20.96521 -19.26522 -18.34741 -17.06704 -16.58300 -16.23337 -15.61927 -15.26948 -14.60122 -14.22458 -13.87853 -13.76814 -13.58509 -13.49227 -13.21668 -12.89972 -12.62712 -12.61972 -12.42535 -12.37839 -12.12644 -11.76825 -11.56174 -11.26161 -10.82953 -10.46360 -10.28361 -10.20609 -8.92623 -7.86762 -5.10821 -0.53109 0.45582 1.00815 1.38548 1.48162 1.55574 1.57674 2.52995 3.24067 3.35719 3.50554 3.96905 4.13181 4.48367 4.57252 4.63595 4.71669 4.81778 4.91627 4.96341 5.07591 5.16515 5.25894 5.28529 5.30098 5.50449 5.66534 5.80230 6.19319 6.31913 6.94955 7.18872 7.88262 8.28672 9.16150 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023886 B = 0.010983 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.964149 B = 2548.879446 C = 3315.613367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 N -0.597 5.597 4 C -0.252 4.252 5 H 0.083 0.917 6 C -0.029 4.029 7 N -0.899 5.899 8 Si 0.920 3.080 9 H -0.295 1.295 10 H -0.299 1.299 11 H -0.265 1.265 12 C 0.244 3.756 13 H 0.101 0.899 14 C -0.143 4.143 15 C -0.237 4.237 16 S 0.440 5.560 17 N -0.359 5.359 18 N -0.271 5.271 19 C -0.004 4.004 20 C -0.062 4.062 21 H 0.033 0.967 22 H 0.031 0.969 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.025 0.975 26 H 0.248 0.752 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 2.416 8.956 9.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.040 3.960 3 N -0.317 5.317 4 C -0.383 4.383 5 H 0.101 0.899 6 C -0.226 4.226 7 N -0.544 5.544 8 Si 0.749 3.251 9 H -0.222 1.222 10 H -0.227 1.227 11 H -0.190 1.190 12 C 0.134 3.866 13 H 0.118 0.882 14 C -0.202 4.202 15 C -0.378 4.378 16 S 0.577 5.423 17 N -0.336 5.336 18 N -0.137 5.137 19 C -0.150 4.150 20 C -0.122 4.122 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.461 2.982 8.033 8.692 hybrid contribution -0.477 -0.608 -0.489 0.915 sum 0.984 2.373 7.544 7.970 Atomic orbital electron populations 1.22066 0.97963 0.98983 1.00449 1.20736 0.93342 0.84044 0.97863 1.44513 1.75009 1.10827 1.01393 1.19284 1.32115 1.02828 0.84097 0.89901 1.25118 0.98289 1.00323 0.98893 1.70295 1.26057 1.32929 1.25088 0.85964 0.79959 0.78501 0.80639 1.22234 1.22653 1.18968 1.18813 0.84303 0.94171 0.89342 0.88155 1.22118 1.00433 0.96404 1.01289 1.28487 1.06904 1.05601 0.96775 1.81935 0.94511 1.44787 1.21078 1.78486 1.28285 1.24141 1.02711 1.71163 1.13876 1.13224 1.15461 1.22710 0.88916 1.04066 0.99275 1.20361 1.00425 1.01299 0.90095 0.94758 0.94977 0.92292 0.92637 0.95687 0.94224 0.91037 0.93739 0.92201 0.89713 0.89441 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 9.77 71.98 0.70 -4.75 16 2 C 0.17 7.05 5.52 86.38 0.48 7.53 16 3 N -0.60 -25.34 2.46 -682.21 -1.68 -27.02 16 4 C -0.25 -11.89 7.72 84.03 0.65 -11.24 16 5 H 0.08 3.80 5.81 -2.91 -0.02 3.78 16 6 C -0.03 -1.44 4.81 84.86 0.41 -1.03 16 7 N -0.90 -46.79 8.82 21.65 0.19 -46.59 16 8 Si 0.92 41.47 29.64 68.60 2.03 43.51 16 9 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 10 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 C 0.24 8.36 3.06 44.25 0.14 8.49 16 13 H 0.10 3.00 6.85 -2.39 -0.02 2.99 16 14 C -0.14 -4.49 9.03 71.98 0.65 -3.84 16 15 C -0.24 -8.19 5.49 25.02 0.14 -8.05 16 16 S 0.44 16.28 20.90 -56.49 -1.18 15.10 16 17 N -0.36 -13.99 12.54 37.02 0.46 -13.53 16 18 N -0.27 -10.11 11.68 -51.25 -0.60 -10.71 16 19 C 0.00 -0.13 6.89 41.91 0.29 0.16 16 20 C -0.06 -1.38 9.98 71.24 0.71 -0.67 16 21 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.06 2.79 6.37 -2.38 -0.02 2.77 16 24 H 0.06 2.75 5.87 -2.38 -0.01 2.73 16 25 H 0.02 0.96 8.11 -2.39 -0.02 0.94 16 26 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.53 7.04 -2.39 -0.02 1.51 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.10 1.78 7.29 -2.39 -0.02 1.76 16 Total: -1.00 -55.76 274.13 4.51 -51.25 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.12 Total: 1.38 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.16 Total: -13.39 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -1.62 Total: -97.85 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: 16.28 SS G_CDS: -1.18 Total: 15.10 kcal Total: -55.76 4.51 -51.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929464589.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.812 kcal (2) G-P(sol) polarization free energy of solvation -55.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds