Wall clock time and date at job start Mon Mar 30 2020 03:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31742 * 123.76565 * 2 1 4 4 N 1.27577 * 118.27108 * 180.30024 * 3 2 1 5 5 S 1.56510 * 109.22143 * 359.73366 * 4 3 2 6 6 C 1.35337 * 123.76825 * 179.80854 * 2 1 3 7 7 C 1.50702 * 127.92277 * 0.02562 * 6 2 1 8 8 H 1.08998 * 109.47425 * 344.71037 * 7 6 2 9 9 C 1.53002 * 109.46503 * 104.71109 * 7 6 2 10 10 N 1.46902 * 109.47561 * 224.70590 * 7 6 2 11 11 C 1.46906 * 110.99573 * 56.04986 * 10 7 6 12 12 C 1.46898 * 111.00283 * 180.02562 * 10 7 6 13 13 C 1.50697 * 109.47095 * 169.99991 * 12 10 7 14 14 H 1.07998 * 120.00028 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99832 * 179.97438 * 13 12 10 16 16 N 1.31510 * 120.00231 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00098 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47063 * 59.99863 * 17 15 13 19 19 H 1.48495 * 109.47265 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46931 * 300.00234 * 17 15 13 21 21 H 1.08994 * 109.47250 * 270.19438 * 1 2 3 22 22 H 1.09003 * 109.46940 * 30.19656 * 1 2 3 23 23 H 1.08998 * 109.46859 * 150.18833 * 1 2 3 24 24 H 1.09005 * 109.46778 * 180.02562 * 9 7 6 25 25 H 1.08999 * 109.47254 * 299.99763 * 9 7 6 26 26 H 1.08993 * 109.47392 * 60.00372 * 9 7 6 27 27 H 1.09001 * 109.46544 * 183.95424 * 11 10 7 28 28 H 1.09001 * 109.47272 * 303.95030 * 11 10 7 29 29 H 1.09000 * 109.47033 * 63.95479 * 11 10 7 30 30 H 1.08992 * 109.47062 * 290.00772 * 12 10 7 31 31 H 1.09003 * 109.46753 * 50.00460 * 12 10 7 32 32 H 0.96997 * 120.00039 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9730 -0.0059 5 16 3.8805 -0.5474 -0.0051 6 6 2.2593 -1.1250 0.0038 7 6 1.7858 -2.5558 0.0080 8 1 0.7305 -2.5885 0.2787 9 6 1.9740 -3.1592 -1.3853 10 7 2.5661 -3.3269 0.9850 11 6 2.4847 -2.7202 2.3204 12 6 2.1316 -4.7299 1.0163 13 6 3.1029 -5.5383 1.8372 14 1 3.9573 -5.0580 2.2907 15 6 2.9003 -6.8911 2.0101 16 7 1.8596 -7.4760 1.4583 17 14 4.1038 -7.8932 3.0283 18 1 4.1475 -7.3571 4.4124 19 1 3.6647 -9.3114 3.0598 20 1 5.4565 -7.8078 2.4215 21 1 -0.3633 0.0035 1.0276 22 1 -0.3633 0.8882 -0.5169 23 1 -0.3633 -0.8917 -0.5109 24 1 1.6312 -4.1939 -1.3824 25 1 1.3950 -2.5871 -2.1103 26 1 3.0293 -3.1265 -1.6560 27 1 3.1267 -3.2698 3.0088 28 1 2.8123 -1.6819 2.2684 29 1 1.4546 -2.7589 2.6748 30 1 1.1389 -4.7929 1.4617 31 1 2.0996 -5.1230 0.0001 32 1 1.7169 -8.4276 1.5803 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929808461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:37 Heat of formation + Delta-G solvation = 68.813839 kcal Electronic energy + Delta-G solvation = -15395.034661 eV Core-core repulsion = 12904.291260 eV Total energy + Delta-G solvation = -2490.743401 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75068 -37.53303 -33.62648 -32.44558 -30.63571 -28.13962 -27.05252 -26.29500 -24.61174 -22.91899 -20.70546 -19.47271 -18.19793 -16.62564 -15.79738 -15.35320 -14.77805 -14.64135 -13.82859 -13.63097 -13.15442 -12.95697 -12.67745 -12.51822 -12.04463 -11.84158 -11.74737 -11.37213 -11.22437 -11.05426 -10.93905 -10.70180 -10.44276 -9.99650 -9.78264 -9.42501 -9.36804 -9.13111 -8.49403 -7.48485 -6.10550 -4.11928 0.46587 1.38549 1.99440 2.36353 3.29277 3.33805 3.36457 4.22833 4.33881 4.59901 4.87921 5.08201 5.26024 5.42571 5.50712 5.56065 5.60318 5.70792 5.85117 6.04452 6.05672 6.14785 6.27344 6.52145 6.59723 7.12576 7.19293 7.67524 7.91424 7.96010 8.03487 8.39565 8.94561 9.52461 11.00271 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.039639 B = 0.006227 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.206928 B = 4495.246907 C = 4773.451668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.007 3.993 3 N -0.247 5.247 4 N -0.316 5.316 5 S 0.456 5.544 6 C -0.228 4.228 7 C 0.157 3.843 8 H 0.057 0.943 9 C -0.142 4.142 10 N -0.534 5.534 11 C 0.035 3.965 12 C 0.191 3.809 13 C -0.510 4.510 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.275 1.275 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.016 0.984 30 H -0.007 1.007 31 H 0.041 0.959 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 10.436 -3.699 11.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.138 4.138 3 N -0.114 5.114 4 N -0.295 5.295 5 S 0.593 5.407 6 C -0.366 4.366 7 C 0.045 3.955 8 H 0.075 0.925 9 C -0.201 4.201 10 N -0.259 5.259 11 C -0.113 4.113 12 C 0.066 3.934 13 C -0.548 4.548 14 H 0.082 0.918 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.011 0.989 31 H 0.059 0.941 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.878 11.397 -3.873 12.069 hybrid contribution -1.719 -1.255 0.895 2.309 sum -0.841 10.142 -2.978 10.604 Atomic orbital electron populations 1.20234 0.85486 1.03606 1.03350 1.22186 1.00081 0.86840 1.04722 1.71187 0.97094 1.27858 1.15225 1.78646 1.10338 1.16587 1.23895 1.81655 1.09654 0.98852 1.50589 1.27188 0.99483 1.02096 1.07848 1.19917 0.95778 0.84217 0.95563 0.92541 1.21945 1.02603 1.01925 0.93580 1.62352 1.53507 1.04827 1.05237 1.22258 0.99764 0.97544 0.91773 1.19853 0.94674 0.80662 0.98188 1.21081 1.09736 0.92701 1.31306 0.91826 1.24962 0.95617 0.97797 0.96065 1.69931 1.28112 1.11157 1.44553 0.86554 0.81357 0.78892 0.80588 1.20295 1.21344 1.20092 0.90369 0.90363 0.90159 0.90195 0.92884 0.91724 0.90153 0.94479 0.96527 0.98892 0.94101 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 9.97 36.01 0.36 -0.39 16 2 C 0.01 0.10 6.88 -83.66 -0.58 -0.47 16 3 N -0.25 -4.03 11.68 32.45 0.38 -3.65 16 4 N -0.32 -5.15 12.54 60.35 0.76 -4.40 16 5 S 0.46 6.74 22.71 -107.50 -2.44 4.29 16 6 C -0.23 -3.47 3.94 -35.34 -0.14 -3.61 16 7 C 0.16 2.57 2.35 -68.86 -0.16 2.41 16 8 H 0.06 0.92 7.15 -51.93 -0.37 0.55 16 9 C -0.14 -2.17 8.97 37.16 0.33 -1.83 16 10 N -0.53 -10.53 4.56 -237.73 -1.08 -11.62 16 11 C 0.04 0.66 9.10 60.07 0.55 1.21 16 12 C 0.19 4.57 4.54 -4.98 -0.02 4.55 16 13 C -0.51 -13.52 8.52 -34.44 -0.29 -13.81 16 14 H 0.06 1.67 7.10 -52.49 -0.37 1.30 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.08 0.82 7.35 -51.93 -0.38 0.43 16 24 H 0.08 1.33 6.20 -51.93 -0.32 1.01 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.59 6.86 -51.93 -0.36 1.23 16 28 H 0.04 0.62 6.28 -51.93 -0.33 0.30 16 29 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 30 H -0.01 -0.17 8.12 -51.93 -0.42 -0.60 16 31 H 0.04 1.02 5.83 -51.93 -0.30 0.72 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 279.26 15.07 4.21 4.21 Total: -1.00 -28.96 279.26 -6.62 -35.58 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: -4.10 Total: -5.01 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -0.05 Total: -10.50 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.79 Total: -44.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 6.74 SS G_CDS: -2.44 Total: 4.29 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.96 -6.62 -35.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929808461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.392 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds