Wall clock time and date at job start Mon Mar 30 2020 03:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31737 * 123.76931 * 2 1 4 4 N 1.27578 * 118.26795 * 180.30137 * 3 2 1 5 5 S 1.56503 * 109.22737 * 359.73231 * 4 3 2 6 6 C 1.35353 * 123.76263 * 179.80799 * 2 1 3 7 7 C 1.50697 * 127.92228 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.47374 * 14.70366 * 7 6 2 9 9 C 1.53006 * 109.47239 * 254.70229 * 7 6 2 10 10 N 1.46902 * 109.47181 * 134.70729 * 7 6 2 11 11 C 1.46892 * 111.00363 * 205.00065 * 10 7 6 12 12 H 1.09004 * 109.47162 * 324.99786 * 11 10 7 13 13 C 1.53005 * 109.47545 * 84.99395 * 11 10 7 14 14 C 1.50698 * 109.47493 * 204.99948 * 11 10 7 15 15 H 1.08005 * 119.99652 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00235 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99988 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00176 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47200 * 59.99369 * 18 16 14 20 20 H 1.48499 * 109.47454 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46822 * 299.99783 * 18 16 14 22 22 H 1.08999 * 109.47287 * 270.19579 * 1 2 3 23 23 H 1.09005 * 109.46936 * 30.18930 * 1 2 3 24 24 H 1.09003 * 109.47429 * 150.19187 * 1 2 3 25 25 H 1.09001 * 109.47002 * 60.00070 * 9 7 6 26 26 H 1.08993 * 109.46955 * 180.02562 * 9 7 6 27 27 H 1.09000 * 109.47050 * 300.00336 * 9 7 6 28 28 H 1.00902 * 110.99496 * 328.95184 * 10 7 6 29 29 H 1.09001 * 109.46780 * 300.00598 * 13 11 10 30 30 H 1.09004 * 109.46572 * 60.00030 * 13 11 10 31 31 H 1.08993 * 109.47178 * 180.02562 * 13 11 10 32 32 H 0.96999 * 120.00154 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0951 0.0000 4 7 3.5091 0.9728 -0.0059 5 16 3.8805 -0.5475 -0.0051 6 6 2.2592 -1.1252 0.0038 7 6 1.7856 -2.5559 0.0080 8 1 0.7279 -2.5893 -0.2531 9 6 1.9862 -3.1554 1.4014 10 7 2.5571 -3.3300 -0.9736 11 6 1.7977 -4.4991 -1.4363 12 1 1.2003 -4.8930 -0.6141 13 6 0.8750 -4.0862 -2.5849 14 6 2.7532 -5.5609 -1.9165 15 1 3.8182 -5.3846 -1.8818 16 6 2.2679 -6.7570 -2.4011 17 7 0.9711 -6.9715 -2.4438 18 14 3.4523 -8.0729 -2.9970 19 1 4.3479 -8.4742 -1.8824 20 1 2.6846 -9.2549 -3.4646 21 1 4.2660 -7.5358 -4.1170 22 1 -0.3634 0.0035 1.0276 23 1 -0.3633 0.8883 -0.5168 24 1 -0.3634 -0.8917 -0.5108 25 1 1.4138 -2.5810 2.1298 26 1 1.6441 -4.1902 1.4043 27 1 3.0439 -3.1219 1.6625 28 1 2.8381 -2.7507 -1.7505 29 1 0.1839 -3.3182 -2.2375 30 1 1.4724 -3.6923 -3.4071 31 1 0.3112 -4.9536 -2.9279 32 1 0.6296 -7.8131 -2.7843 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930869082.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:41 Heat of formation + Delta-G solvation = 59.633871 kcal Electronic energy + Delta-G solvation = -15305.680443 eV Core-core repulsion = 12814.538969 eV Total energy + Delta-G solvation = -2491.141474 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77316 -37.06709 -33.94989 -32.38539 -30.52515 -27.54844 -27.13605 -26.46554 -25.21134 -22.39458 -20.18417 -19.80947 -18.25975 -16.65108 -15.73934 -15.28850 -14.95696 -14.53875 -13.67935 -13.22477 -13.02080 -12.86982 -12.65954 -12.32291 -12.05576 -11.73592 -11.52173 -11.39672 -11.25784 -10.95140 -10.75823 -10.54407 -10.20511 -10.07489 -9.82588 -9.45673 -9.36034 -9.06442 -8.42549 -7.49737 -6.05585 -4.09174 0.40857 1.31439 1.92579 2.32735 3.30784 3.35153 3.38240 4.19258 4.37145 4.69696 4.87658 5.19524 5.26492 5.43654 5.49021 5.60603 5.68214 5.75491 6.05837 6.11148 6.26529 6.56972 6.58133 6.72367 6.97253 7.19333 7.63119 7.78124 7.90386 8.14112 8.32596 8.46626 8.97209 9.56431 11.01489 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.037903 B = 0.006159 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.550840 B = 4544.957669 C = 4861.039144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.012 3.988 3 N -0.245 5.245 4 N -0.312 5.312 5 S 0.448 5.552 6 C -0.242 4.242 7 C 0.162 3.838 8 H 0.063 0.937 9 C -0.133 4.133 10 N -0.676 5.676 11 C 0.213 3.787 12 H 0.039 0.961 13 C -0.171 4.171 14 C -0.497 4.497 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.326 0.674 29 H 0.004 0.996 30 H 0.028 0.972 31 H 0.091 0.909 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 9.434 5.221 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.133 4.133 3 N -0.112 5.112 4 N -0.291 5.291 5 S 0.585 5.415 6 C -0.381 4.381 7 C 0.049 3.951 8 H 0.081 0.919 9 C -0.192 4.192 10 N -0.307 5.307 11 C 0.105 3.895 12 H 0.057 0.943 13 C -0.230 4.230 14 C -0.536 4.536 15 H 0.082 0.918 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.204 1.204 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.023 0.977 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.973 10.064 5.642 11.705 hybrid contribution -1.574 -0.913 -1.013 2.083 sum 0.399 9.151 4.629 10.263 Atomic orbital electron populations 1.20267 0.85365 1.03862 1.03338 1.22215 1.00160 0.86791 1.04180 1.71190 0.97031 1.27895 1.15123 1.78680 1.10367 1.16279 1.23731 1.81602 1.09535 0.99413 1.50969 1.27410 0.99494 1.02633 1.08532 1.19906 0.96629 0.82548 0.95985 0.91936 1.21825 1.02053 1.01542 0.93749 1.61139 1.42568 1.09699 1.17275 1.19238 0.91303 0.86208 0.92707 0.94324 1.22463 0.99817 1.00557 1.00185 1.21069 0.93417 0.98531 1.40595 0.91845 1.24932 0.95180 0.98353 0.95919 1.69858 1.11637 1.24958 1.47204 0.86556 0.80804 0.80859 0.79137 1.20233 1.21456 1.20357 0.90234 0.90341 0.89991 0.93312 0.90848 0.92117 0.85656 0.97650 0.95299 0.89012 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.14 36.00 0.37 -0.41 16 2 C 0.01 0.17 6.89 -83.66 -0.58 -0.40 16 3 N -0.25 -3.97 11.68 32.45 0.38 -3.59 16 4 N -0.31 -4.98 12.54 60.35 0.76 -4.22 16 5 S 0.45 6.30 23.33 -107.50 -2.51 3.79 16 6 C -0.24 -3.60 5.18 -35.34 -0.18 -3.79 16 7 C 0.16 2.61 2.81 -68.86 -0.19 2.42 16 8 H 0.06 1.03 5.77 -51.93 -0.30 0.73 16 9 C -0.13 -2.00 9.38 37.16 0.35 -1.65 16 10 N -0.68 -13.01 5.98 -102.17 -0.61 -13.62 16 11 C 0.21 4.93 2.38 -68.87 -0.16 4.77 16 12 H 0.04 0.97 7.11 -51.93 -0.37 0.60 16 13 C -0.17 -3.86 8.92 37.16 0.33 -3.53 16 14 C -0.50 -13.02 8.84 -34.44 -0.30 -13.32 16 15 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 16 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 17 N -0.90 -24.62 11.32 55.43 0.63 -23.99 16 18 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 0.92 6.94 -51.93 -0.36 0.56 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.21 7.42 -51.93 -0.39 0.82 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.33 6.16 8.09 -39.29 -0.32 5.84 16 29 H 0.00 0.09 7.43 -51.93 -0.39 -0.29 16 30 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 281.21 15.07 4.24 4.24 Total: -1.00 -27.91 281.21 -6.70 -34.61 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.09 Total: 1.51 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.47 Total: -14.50 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 1.15 Total: -45.42 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 6.30 SS G_CDS: -2.51 Total: 3.79 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.91 -6.70 -34.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930869082.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.244 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds