Wall clock time and date at job start Mon Mar 30 2020 03:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31738 * 123.76893 * 2 1 4 4 N 1.27578 * 118.27257 * 180.02562 * 3 2 1 5 5 S 1.56508 * 109.21950 * 359.70904 * 4 3 2 6 6 C 1.35343 * 123.76255 * 180.02562 * 2 1 3 7 7 C 1.50698 * 127.92790 * 359.97438 * 6 2 1 8 8 H 1.09005 * 109.46919 * 345.00581 * 7 6 2 9 9 C 1.53008 * 109.46948 * 104.99677 * 7 6 2 10 10 N 1.46892 * 109.47609 * 225.00142 * 7 6 2 11 11 C 1.46899 * 111.00375 * 155.00354 * 10 7 6 12 12 H 1.08997 * 109.47292 * 34.99261 * 11 10 7 13 13 C 1.53007 * 109.46625 * 275.00062 * 11 10 7 14 14 C 1.50691 * 109.47602 * 155.00095 * 11 10 7 15 15 H 1.08008 * 119.99965 * 30.11719 * 14 11 10 16 16 C 1.37872 * 120.00258 * 210.12237 * 14 11 10 17 17 N 1.31517 * 119.99860 * 353.24958 * 16 14 11 18 18 Si 1.86802 * 120.00283 * 173.25022 * 16 14 11 19 19 H 1.48504 * 109.47086 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.47197 * 299.99847 * 18 16 14 21 21 H 1.48501 * 109.46908 * 59.99911 * 18 16 14 22 22 H 1.09000 * 109.47140 * 269.98062 * 1 2 3 23 23 H 1.09007 * 109.46439 * 29.97860 * 1 2 3 24 24 H 1.08992 * 109.47019 * 149.97306 * 1 2 3 25 25 H 1.09001 * 109.47212 * 300.00431 * 9 7 6 26 26 H 1.08995 * 109.46776 * 60.00226 * 9 7 6 27 27 H 1.08993 * 109.46899 * 180.02562 * 9 7 6 28 28 H 1.00902 * 110.99717 * 278.95724 * 10 7 6 29 29 H 1.09001 * 109.46791 * 304.01672 * 13 11 10 30 30 H 1.08999 * 109.47483 * 64.01923 * 13 11 10 31 31 H 1.09000 * 109.46949 * 184.01966 * 13 11 10 32 32 H 0.97000 * 119.99905 * 354.69242 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2393 1.0951 0.0000 4 7 3.5092 0.9729 -0.0005 5 16 3.8805 -0.5475 0.0065 6 6 2.2592 -1.1252 -0.0005 7 6 1.7858 -2.5559 -0.0006 8 1 0.7293 -2.5890 0.2657 9 6 1.9795 -3.1570 -1.3943 10 7 2.5620 -3.3286 0.9782 11 6 1.8049 -4.4974 1.4460 12 1 1.2035 -4.8922 0.6272 13 6 0.8878 -4.0829 2.5985 14 6 2.7627 -5.5585 1.9229 15 1 3.7164 -5.2755 2.3435 16 6 2.4217 -6.8906 1.8223 17 7 1.2122 -7.2323 1.4351 18 14 3.6777 -8.2101 2.2358 19 1 3.0669 -9.5507 2.0490 20 1 4.8538 -8.0722 1.3398 21 1 4.1105 -8.0562 3.6480 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3632 0.8903 -0.5136 24 1 -0.3633 -0.8897 -0.5142 25 1 1.4035 -2.5836 -2.1206 26 1 3.0359 -3.1239 -1.6606 27 1 1.6367 -4.1916 -1.3944 28 1 3.4537 -3.6050 0.5955 29 1 1.4819 -3.6226 3.3880 30 1 0.1490 -3.3681 2.2360 31 1 0.3792 -4.9628 2.9926 32 1 0.5371 -6.5501 1.2947 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930869088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:44 Heat of formation + Delta-G solvation = 51.570983 kcal Electronic energy + Delta-G solvation = -15339.368724 eV Core-core repulsion = 12847.877617 eV Total energy + Delta-G solvation = -2491.491107 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.71469 -37.21878 -34.12280 -32.47071 -30.45259 -27.57839 -27.31934 -26.44810 -24.85661 -22.51008 -20.36549 -19.88381 -18.22149 -17.19355 -15.74578 -15.25240 -14.84624 -14.08220 -13.78958 -13.60252 -13.11879 -12.96475 -12.75363 -12.52917 -12.36892 -11.83074 -11.47508 -11.33111 -11.28621 -10.88717 -10.84012 -10.70552 -10.30612 -10.16943 -9.89074 -9.41980 -9.27001 -8.66999 -8.47440 -7.64249 -6.49755 -4.23478 0.47987 1.36868 1.95852 2.38101 3.37594 3.38406 3.57283 4.23499 4.41380 4.63765 4.95545 5.10429 5.30108 5.37600 5.42578 5.49382 5.57724 5.70024 5.95252 6.02839 6.06287 6.26316 6.43609 6.67780 6.78201 6.89153 7.40009 7.69368 7.89081 7.95301 8.36193 8.42763 8.73070 9.50574 10.87971 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.037184 B = 0.006291 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.841264 B = 4449.674248 C = 4771.287408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.006 3.994 3 N -0.244 5.244 4 N -0.312 5.312 5 S 0.431 5.569 6 C -0.213 4.213 7 C 0.158 3.842 8 H 0.095 0.905 9 C -0.175 4.175 10 N -0.680 5.680 11 C 0.196 3.804 12 H 0.014 0.986 13 C -0.125 4.125 14 C -0.601 4.601 15 H 0.057 0.943 16 C 0.025 3.975 17 N -0.907 5.907 18 Si 1.067 2.933 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.287 1.287 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.340 0.660 29 H 0.043 0.957 30 H 0.014 0.986 31 H 0.046 0.954 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 9.200 -4.759 10.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.139 4.139 3 N -0.111 5.111 4 N -0.291 5.291 5 S 0.567 5.433 6 C -0.352 4.352 7 C 0.044 3.956 8 H 0.113 0.887 9 C -0.235 4.235 10 N -0.312 5.312 11 C 0.089 3.911 12 H 0.031 0.969 13 C -0.183 4.183 14 C -0.640 4.640 15 H 0.075 0.925 16 C -0.181 4.181 17 N -0.543 5.543 18 Si 0.894 3.106 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.213 1.213 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.159 0.841 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.339 9.079 -4.186 10.267 hybrid contribution -1.643 0.554 -0.653 1.853 sum 0.695 9.633 -4.838 10.802 Atomic orbital electron populations 1.20227 0.85472 1.03454 1.03474 1.22137 1.00069 0.86746 1.04929 1.71140 0.97043 1.27909 1.15014 1.78718 1.10330 1.15692 1.24338 1.81402 1.10102 1.00313 1.51492 1.27272 0.98991 1.02290 1.06611 1.19850 0.98989 0.84735 0.92001 0.88674 1.22528 1.02088 1.02165 0.96728 1.60891 1.06486 1.26994 1.36804 1.19316 0.92772 0.86175 0.92884 0.96875 1.21838 0.97828 0.98636 1.00013 1.21979 1.04191 0.92200 1.45623 0.92514 1.25836 0.99617 0.98780 0.93843 1.70811 1.03094 1.37674 1.42691 0.83577 0.74668 0.75843 0.76468 1.20814 1.21358 1.21336 0.90201 0.90434 0.90284 0.92585 0.92381 0.90832 0.84123 0.93755 0.96712 0.93458 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 9.97 36.01 0.36 -0.41 16 2 C 0.01 0.09 6.89 -83.66 -0.58 -0.48 16 3 N -0.24 -4.07 11.68 32.45 0.38 -3.69 16 4 N -0.31 -5.15 12.54 60.35 0.76 -4.39 16 5 S 0.43 6.22 23.33 -107.50 -2.51 3.71 16 6 C -0.21 -3.25 5.53 -35.34 -0.20 -3.44 16 7 C 0.16 2.53 2.68 -68.87 -0.18 2.35 16 8 H 0.10 1.55 6.15 -51.93 -0.32 1.23 16 9 C -0.18 -2.56 9.13 37.16 0.34 -2.22 16 10 N -0.68 -13.08 5.97 -102.17 -0.61 -13.69 16 11 C 0.20 4.47 2.07 -68.87 -0.14 4.33 16 12 H 0.01 0.33 5.86 -51.93 -0.30 0.02 16 13 C -0.12 -2.74 9.28 37.16 0.34 -2.39 16 14 C -0.60 -15.58 8.28 -34.45 -0.29 -15.86 16 15 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 16 C 0.02 0.66 5.45 -17.82 -0.10 0.56 16 17 N -0.91 -25.65 13.55 55.43 0.75 -24.90 16 18 Si 1.07 23.79 29.91 -169.99 -5.08 18.70 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.82 7.34 -51.93 -0.38 0.44 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 27 H 0.07 1.20 7.43 -51.93 -0.39 0.81 16 28 H 0.34 6.51 8.09 -39.29 -0.32 6.19 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.01 0.28 7.48 -51.93 -0.39 -0.11 16 31 H 0.05 1.10 7.91 -51.93 -0.41 0.69 16 32 H 0.27 7.56 6.56 -40.82 -0.27 7.29 16 LS Contribution 282.92 15.07 4.26 4.26 Total: -1.00 -28.78 282.92 -6.58 -35.37 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.09 Total: 2.20 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -0.44 Total: -17.57 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 1.28 Total: -46.67 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.08 Total: 18.70 kcal Atomic # 16 Polarization: 6.22 SS G_CDS: -2.51 Total: 3.71 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.78 -6.58 -35.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930869088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.939 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds