Wall clock time and date at job start Mon Mar 30 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31737 * 123.76706 * 2 1 4 4 N 1.27576 * 118.27445 * 180.30617 * 3 2 1 5 5 S 1.56509 * 109.21898 * 359.73022 * 4 3 2 6 6 C 1.35340 * 123.76659 * 179.81137 * 2 1 3 7 7 C 1.50702 * 127.92283 * 0.02562 * 6 2 1 8 8 H 1.09006 * 109.47104 * 14.70537 * 7 6 2 9 9 C 1.52999 * 109.47112 * 254.70499 * 7 6 2 10 10 N 1.46892 * 109.47335 * 134.70353 * 7 6 2 11 11 C 1.46901 * 111.00174 * 272.77903 * 10 7 6 12 12 H 1.08991 * 109.47147 * 33.54164 * 11 10 7 13 13 C 1.52999 * 109.46944 * 273.54061 * 11 10 7 14 14 C 1.50708 * 109.47085 * 153.54524 * 11 10 7 15 15 H 1.07992 * 120.00096 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99347 * 180.02562 * 14 11 10 17 17 N 1.31508 * 120.00406 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99218 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47622 * 60.00108 * 18 16 14 20 20 H 1.48502 * 109.46937 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47258 * 299.99604 * 18 16 14 22 22 H 1.09005 * 109.46738 * 270.19665 * 1 2 3 23 23 H 1.09004 * 109.46689 * 30.18864 * 1 2 3 24 24 H 1.08999 * 109.47186 * 150.19171 * 1 2 3 25 25 H 1.09006 * 109.47251 * 175.16598 * 9 7 6 26 26 H 1.08996 * 109.47397 * 295.17182 * 9 7 6 27 27 H 1.09000 * 109.47069 * 55.17287 * 9 7 6 28 28 H 1.00899 * 111.00174 * 148.81929 * 10 7 6 29 29 H 1.09002 * 109.47705 * 300.38710 * 13 11 10 30 30 H 1.09001 * 109.46851 * 60.38711 * 13 11 10 31 31 H 1.09005 * 109.47102 * 180.38441 * 13 11 10 32 32 H 0.97001 * 119.99617 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2393 1.0951 0.0000 4 7 3.5092 0.9730 -0.0060 5 16 3.8806 -0.5474 -0.0052 6 6 2.2593 -1.1251 0.0037 7 6 1.7859 -2.5558 0.0079 8 1 0.7281 -2.5892 -0.2533 9 6 1.9864 -3.1553 1.4012 10 7 2.5572 -3.3297 -0.9738 11 6 1.9443 -3.2496 -2.3064 12 1 1.4866 -2.2692 -2.4374 13 6 0.8738 -4.3344 -2.4414 14 6 3.0028 -3.4547 -3.3594 15 1 4.0283 -3.6269 -3.0679 16 6 2.6620 -3.4215 -4.6950 17 7 1.4133 -3.2113 -5.0500 18 14 3.9741 -3.6750 -6.0001 19 1 4.5978 -5.0108 -5.8222 20 1 3.3546 -3.5929 -7.3473 21 1 5.0130 -2.6221 -5.8687 22 1 -0.3633 0.0035 1.0277 23 1 -0.3633 0.8883 -0.5168 24 1 -0.3633 -0.8917 -0.5108 25 1 1.5660 -4.1606 1.4281 26 1 3.0516 -3.2007 1.6274 27 1 1.4842 -2.5316 2.1408 28 1 2.6579 -4.2895 -0.6792 29 1 1.3303 -5.3146 -2.3035 30 1 0.1047 -4.1820 -1.6842 31 1 0.4237 -4.2794 -3.4326 32 1 1.1735 -3.1883 -5.9897 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930869090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:45 Heat of formation + Delta-G solvation = 58.912413 kcal Electronic energy + Delta-G solvation = -15522.091427 eV Core-core repulsion = 13030.918668 eV Total energy + Delta-G solvation = -2491.172759 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.45698 -37.02938 -33.82546 -32.31747 -30.61566 -27.39777 -26.98605 -26.23371 -25.18182 -22.25206 -20.46265 -19.48542 -18.06365 -16.40371 -15.45863 -15.28211 -14.90150 -14.35673 -13.74190 -13.48117 -12.80144 -12.62723 -12.48847 -12.29944 -12.29180 -11.60966 -11.53232 -11.38435 -11.05274 -10.94761 -10.73498 -10.54507 -10.22512 -9.97856 -9.63514 -9.16109 -9.11174 -8.97407 -8.41654 -7.53466 -6.04504 -4.08259 0.75313 1.68273 2.26062 2.63463 3.31108 3.35605 3.38545 4.38116 4.48774 4.80320 5.07365 5.27493 5.30300 5.40516 5.51023 5.65788 5.73084 5.86148 6.04049 6.04818 6.19574 6.31079 6.57290 6.72268 6.97146 7.19840 7.64678 7.78545 8.15360 8.21939 8.36993 8.46903 8.98005 9.57391 11.02458 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.024388 B = 0.008116 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.817749 B = 3449.313831 C = 3766.646112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.005 3.995 3 N -0.249 5.249 4 N -0.321 5.321 5 S 0.459 5.541 6 C -0.216 4.216 7 C 0.158 3.842 8 H 0.065 0.935 9 C -0.150 4.150 10 N -0.680 5.680 11 C 0.212 3.788 12 H 0.032 0.968 13 C -0.169 4.169 14 C -0.498 4.498 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.277 1.277 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.336 0.664 29 H 0.030 0.970 30 H 0.005 0.995 31 H 0.090 0.910 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 0.385 11.441 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 N -0.116 5.116 4 N -0.300 5.300 5 S 0.596 5.404 6 C -0.355 4.355 7 C 0.045 3.955 8 H 0.083 0.917 9 C -0.208 4.208 10 N -0.312 5.312 11 C 0.105 3.895 12 H 0.050 0.950 13 C -0.228 4.228 14 C -0.537 4.537 15 H 0.081 0.919 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.155 0.845 29 H 0.049 0.951 30 H 0.024 0.976 31 H 0.109 0.891 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.194 2.050 11.132 11.382 hybrid contribution -1.638 -1.284 -0.885 2.262 sum -0.444 0.766 10.247 10.285 Atomic orbital electron populations 1.20211 0.85758 1.03898 1.02647 1.22115 0.99961 0.87023 1.04973 1.71134 0.97116 1.27963 1.15344 1.78604 1.10375 1.16563 1.24430 1.81349 1.10012 0.99040 1.50043 1.27153 0.99203 1.01866 1.07316 1.19693 0.96495 0.86077 0.93231 0.91743 1.22024 1.02694 1.00745 0.95361 1.60835 1.51353 1.15955 1.03070 1.19225 0.92029 0.94727 0.83530 0.95002 1.22437 0.98759 0.99065 1.02571 1.21072 0.94676 1.48166 0.89751 0.91860 1.24940 0.95446 0.95401 0.98627 1.69857 1.16623 1.50195 1.16852 0.86584 0.81735 0.78739 0.80495 1.20269 1.21435 1.20255 0.90747 0.90454 0.90186 0.91707 0.91644 0.92290 0.84496 0.95117 0.97618 0.89105 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.14 36.01 0.37 -0.52 16 2 C 0.00 0.08 6.89 -83.66 -0.58 -0.49 16 3 N -0.25 -4.73 11.68 32.45 0.38 -4.35 16 4 N -0.32 -6.04 12.54 60.35 0.76 -5.29 16 5 S 0.46 7.71 23.33 -107.50 -2.51 5.20 16 6 C -0.22 -3.69 5.31 -35.34 -0.19 -3.87 16 7 C 0.16 2.51 2.80 -68.87 -0.19 2.32 16 8 H 0.06 1.06 5.88 -51.93 -0.31 0.75 16 9 C -0.15 -1.81 9.13 37.16 0.34 -1.47 16 10 N -0.68 -12.83 5.98 -102.17 -0.61 -13.44 16 11 C 0.21 4.98 2.37 -68.86 -0.16 4.81 16 12 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 13 C -0.17 -3.78 8.93 37.16 0.33 -3.45 16 14 C -0.50 -13.20 8.84 -34.44 -0.30 -13.51 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 17 N -0.90 -25.12 11.32 55.43 0.63 -24.49 16 18 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.08 1.09 6.94 -51.93 -0.36 0.73 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.34 5.83 8.04 -39.29 -0.32 5.52 16 29 H 0.03 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.00 0.10 7.57 -51.93 -0.39 -0.30 16 31 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 282.58 15.07 4.26 4.26 Total: -1.00 -29.30 282.58 -6.77 -36.07 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.17 Total: 0.53 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -0.48 Total: -14.73 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 1.15 Total: -47.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 7.71 SS G_CDS: -2.51 Total: 5.20 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.30 -6.77 -36.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930869090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.981 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds