Wall clock time and date at job start Mon Mar 30 2020 03:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.57267 * 2 1 4 4 O 1.20834 * 119.99433 * 239.84391 * 3 2 1 5 5 O 1.34221 * 120.00477 * 59.84335 * 3 2 1 6 6 C 1.53122 * 109.52126 * 239.84007 * 2 1 3 7 7 C 1.53038 * 109.27645 * 297.74834 * 6 2 1 8 8 N 1.46846 * 109.52305 * 300.81755 * 7 6 2 9 9 C 1.46896 * 111.00009 * 185.83846 * 8 7 6 10 10 C 1.52996 * 109.47256 * 170.00096 * 9 8 7 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.46847 * 111.19486 * 61.74774 * 8 7 6 20 20 C 1.53037 * 109.52174 * 298.25332 * 19 8 7 21 21 H 1.09001 * 109.47077 * 180.16456 * 1 2 3 22 22 H 1.09011 * 109.46775 * 300.15815 * 1 2 3 23 23 H 1.08998 * 109.47278 * 60.16142 * 1 2 3 24 24 H 0.96692 * 117.00350 * 179.97438 * 5 3 2 25 25 H 1.08996 * 109.49978 * 177.80650 * 6 2 1 26 26 H 1.09000 * 109.53471 * 57.71082 * 6 2 1 27 27 H 1.09005 * 109.45785 * 180.80663 * 7 6 2 28 28 H 1.09002 * 109.46382 * 60.83764 * 7 6 2 29 29 H 1.09004 * 109.46774 * 50.00295 * 9 8 7 30 30 H 1.09000 * 109.47723 * 290.00683 * 9 8 7 31 31 H 1.09004 * 109.47066 * 60.00378 * 10 9 8 32 32 H 1.08994 * 109.47405 * 300.00209 * 10 9 8 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.46766 * 58.27139 * 19 8 7 35 35 H 1.09002 * 109.46309 * 178.24075 * 19 8 7 36 36 H 1.08995 * 109.50368 * 299.23725 * 20 19 8 37 37 H 1.09001 * 109.53616 * 179.14369 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0349 1.4199 0.0000 4 8 2.7326 1.8130 -0.9049 5 8 1.7096 2.2480 1.0050 6 6 2.0417 -0.7251 -1.2478 7 6 1.5766 -2.1826 -1.2116 8 7 2.0925 -2.8324 0.0001 9 6 1.7824 -4.2682 0.0002 10 6 2.5408 -4.9537 1.1384 11 6 2.2231 -6.4269 1.1381 12 1 1.5481 -6.8336 0.3996 13 6 2.7991 -7.2566 2.0768 14 7 3.6213 -6.7613 2.9758 15 14 2.4112 -9.0838 2.0716 16 1 2.8217 -9.6733 0.7719 17 1 3.1511 -9.7500 3.1735 18 1 0.9522 -9.2808 2.2658 19 6 1.5767 -2.1825 1.2117 20 6 2.0418 -0.7250 1.2478 21 1 -0.3633 -1.0277 0.0030 22 1 -0.3633 0.5163 0.8887 23 1 -0.3634 0.5113 -0.8914 24 1 2.0573 3.1491 0.9614 25 1 3.1309 -0.6910 -1.2675 26 1 1.6463 -0.2390 -2.1397 27 1 1.9513 -2.7054 -2.0916 28 1 0.4871 -2.2162 -1.2058 29 1 2.0837 -4.7050 -0.9520 30 1 0.7107 -4.4086 0.1413 31 1 2.2395 -4.5169 2.0906 32 1 3.6124 -4.8135 0.9973 33 1 4.0262 -7.3450 3.6364 34 1 0.4872 -2.2161 1.2061 35 1 1.9514 -2.7052 2.0917 36 1 3.1310 -0.6910 1.2674 37 1 1.6464 -0.2382 2.1393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062844439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:41 Heat of formation + Delta-G solvation = -128.336762 kcal Electronic energy + Delta-G solvation = -17861.357709 eV Core-core repulsion = 15022.852689 eV Total energy + Delta-G solvation = -2838.505020 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.85845 -39.87117 -37.14490 -36.35199 -34.74728 -32.03851 -31.43829 -28.65171 -26.84331 -25.43086 -24.21054 -22.94755 -21.68289 -19.69731 -18.87509 -18.58277 -17.83938 -16.75695 -16.54349 -16.16168 -16.01596 -15.40647 -15.23202 -14.73261 -14.49935 -14.23040 -14.02517 -13.31342 -13.13043 -12.97589 -12.83947 -12.77599 -12.57391 -12.48747 -12.31387 -12.16108 -11.91856 -11.58879 -11.56740 -11.34797 -11.18841 -11.04673 -10.49906 -9.08354 -8.17527 -6.28556 1.17099 1.42079 1.45043 1.52875 2.08206 2.42331 3.07389 3.16103 3.49770 3.67981 3.86996 4.15971 4.29488 4.32292 4.33083 4.50211 4.56672 4.68840 4.71234 4.78266 4.87782 4.92925 4.94096 5.03254 5.10981 5.16013 5.22583 5.35697 5.49322 5.59484 5.70990 5.81942 6.14255 6.35573 6.38183 6.88924 6.99552 7.40487 8.94379 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051619 B = 0.004628 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.304273 B = 6048.489830 C = 6223.577715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C 0.497 3.503 4 O -0.548 6.548 5 O -0.506 6.506 6 C -0.090 4.090 7 C 0.057 3.943 8 N -0.556 5.556 9 C 0.080 3.920 10 C 0.035 3.965 11 C -0.544 4.544 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.965 3.035 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.057 3.943 20 C -0.095 4.095 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.426 0.574 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.025 0.975 31 H -0.003 1.003 32 H -0.011 1.011 33 H 0.263 0.737 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 15.938 -5.182 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.051 4.051 3 C 0.341 3.659 4 O -0.438 6.438 5 O -0.319 6.319 6 C -0.127 4.127 7 C -0.071 4.071 8 N -0.281 5.281 9 C -0.047 4.047 10 C -0.002 4.002 11 C -0.583 4.583 12 H 0.079 0.921 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.071 4.071 20 C -0.133 4.133 21 H 0.092 0.908 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.288 0.712 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.016 0.984 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.080 15.672 -5.263 17.984 hybrid contribution -0.221 -0.503 0.232 0.596 sum -7.301 15.168 -5.031 17.570 Atomic orbital electron populations 1.21943 0.90043 1.03838 1.03850 1.20585 0.99054 0.86996 0.98468 1.23480 0.75780 0.88529 0.78108 1.90699 1.37285 1.77843 1.37982 1.84500 1.71610 1.28558 1.47201 1.21472 1.01318 0.93894 0.96059 1.22152 0.98039 0.94028 0.92874 1.61916 1.60573 1.02925 1.02684 1.21943 0.96992 0.86197 0.99544 1.18935 0.94407 0.93772 0.93113 1.21617 1.27433 0.94484 1.14758 0.92118 1.25941 0.94742 1.03874 0.95007 1.70106 1.31479 1.37352 1.18277 0.85510 0.78644 0.79038 0.77893 1.19256 1.20954 1.19067 1.22074 0.97714 0.94029 0.93263 1.21575 1.01083 0.94072 0.96524 0.90831 0.90117 0.90988 0.71199 0.92158 0.89595 0.90285 0.93305 0.91888 0.95674 0.98438 0.99277 0.92823 0.93467 0.92057 0.92220 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.83 71.98 0.56 -1.95 16 2 C -0.05 -1.13 0.71 -52.85 -0.04 -1.17 16 3 C 0.50 11.32 6.93 71.24 0.49 11.82 16 4 O -0.55 -15.75 16.73 21.94 0.37 -15.39 16 5 O -0.51 -8.22 13.26 -51.33 -0.68 -8.90 16 6 C -0.09 -2.25 4.19 30.65 0.13 -2.12 16 7 C 0.06 1.55 5.21 86.33 0.45 2.00 16 8 N -0.56 -19.60 4.66 -896.36 -4.17 -23.78 16 9 C 0.08 3.35 4.90 86.30 0.42 3.77 16 10 C 0.04 1.87 4.90 29.85 0.15 2.02 16 11 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 12 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 13 C 0.00 0.13 5.46 84.66 0.46 0.60 16 14 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 15 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 C 0.06 1.82 5.04 86.33 0.44 2.25 16 20 C -0.09 -2.46 4.82 30.65 0.15 -2.31 16 21 H 0.07 1.40 4.92 -2.39 -0.01 1.39 16 22 H 0.08 1.28 8.11 -2.38 -0.02 1.26 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.43 3.20 9.10 -74.06 -0.67 2.52 16 25 H 0.06 1.76 8.04 -2.39 -0.02 1.74 16 26 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.08 2.13 8.02 -2.38 -0.02 2.11 16 28 H 0.05 1.19 6.51 -2.39 -0.02 1.18 16 29 H 0.06 2.57 7.99 -2.38 -0.02 2.56 16 30 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 31 H 0.00 -0.15 6.43 -2.38 -0.02 -0.17 16 32 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 34 H 0.05 1.36 6.51 -2.39 -0.02 1.35 16 35 H 0.06 2.33 6.21 -2.39 -0.01 2.32 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -69.13 294.63 1.66 -67.48 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.39 Total: 7.00 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 3.45 Total: -15.82 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -3.89 Total: -80.52 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.31 Total: -24.28 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.13 1.66 -67.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062844439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.859 kcal (2) G-P(sol) polarization free energy of solvation -69.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds