Wall clock time and date at job start Mon Mar 30 2020 03:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.50265 * 2 1 4 4 O 1.20826 * 119.99863 * 119.92185 * 3 2 1 5 5 O 1.34235 * 120.00073 * 299.92598 * 3 2 1 6 6 C 1.53114 * 109.49922 * 239.92645 * 2 1 3 7 7 C 1.53116 * 109.16151 * 297.66853 * 6 2 1 8 8 C 1.53036 * 109.28144 * 302.35164 * 7 6 2 9 9 N 1.46840 * 109.52295 * 59.17509 * 8 7 6 10 10 C 1.46898 * 111.00086 * 174.16146 * 9 8 7 11 11 C 1.53006 * 109.47006 * 66.04921 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48508 * 109.47394 * 329.99535 * 16 14 12 20 20 C 1.46852 * 111.19878 * 298.25982 * 9 8 7 21 21 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47027 * 300.07614 * 1 2 3 23 23 H 1.09002 * 109.47021 * 60.07307 * 1 2 3 24 24 H 0.96701 * 116.99638 * 179.97438 * 5 3 2 25 25 H 1.09005 * 109.52186 * 177.76533 * 6 2 1 26 26 H 1.08997 * 109.57935 * 57.61279 * 6 2 1 27 27 H 1.09007 * 109.50468 * 182.40654 * 7 6 2 28 28 H 1.08998 * 109.53330 * 62.31342 * 7 6 2 29 29 H 1.08997 * 109.45827 * 299.16199 * 8 7 6 30 30 H 1.08998 * 109.46456 * 179.19656 * 8 7 6 31 31 H 1.09001 * 109.47392 * 306.05219 * 10 9 8 32 32 H 1.09001 * 109.47520 * 186.04942 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.45836 * 181.75698 * 20 9 8 37 37 H 1.08990 * 109.46120 * 301.72352 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0332 1.4206 0.0000 4 8 2.7269 1.8158 0.9069 5 8 1.7106 2.2469 -1.0075 6 6 2.0411 -0.7233 -1.2490 7 6 1.5758 -2.1815 -1.2111 8 6 2.0862 -2.8416 0.0717 9 7 1.5692 -2.1136 1.2375 10 6 1.9248 -2.7997 2.4868 11 6 3.4425 -2.7597 2.6765 12 6 3.8073 -3.4641 3.9578 13 1 3.0340 -3.8966 4.5753 14 6 5.1282 -3.5554 4.3423 15 7 6.0699 -3.0283 3.5906 16 14 5.5804 -4.4279 5.9309 17 1 5.8196 -5.8672 5.6544 18 1 6.8123 -3.8209 6.4957 19 1 4.4686 -4.2892 6.9056 20 6 2.0419 -0.7233 1.2477 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5150 0.8893 23 1 -0.3633 0.5127 -0.8907 24 1 2.0565 3.1488 -0.9634 25 1 3.1305 -0.6889 -1.2697 26 1 1.6445 -0.2374 -2.1405 27 1 1.9724 -2.7127 -2.0764 28 1 0.4866 -2.2171 -1.2302 29 1 3.1759 -2.8186 0.0832 30 1 1.7446 -3.8760 0.1087 31 1 1.5918 -3.8365 2.4394 32 1 1.4404 -2.3005 3.3260 33 1 3.9268 -3.2590 1.8373 34 1 3.7755 -1.7230 2.7239 35 1 6.9991 -3.0922 3.8613 36 1 1.6678 -0.2191 2.1388 37 1 3.1317 -0.7103 1.2537 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062876890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:45 Heat of formation + Delta-G solvation = -106.363012 kcal Electronic energy + Delta-G solvation = -18229.374504 eV Core-core repulsion = 15391.822338 eV Total energy + Delta-G solvation = -2837.552167 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.69733 -38.61168 -36.04193 -34.80764 -32.67079 -31.56013 -28.96983 -26.83084 -25.19907 -24.36161 -23.01965 -21.48288 -20.34919 -18.28025 -17.76444 -16.85030 -16.15722 -15.60722 -14.78254 -14.62423 -14.51893 -14.06856 -13.86180 -13.41079 -13.00511 -12.55774 -12.35553 -12.07418 -12.02299 -11.65552 -11.47328 -11.23167 -11.02931 -10.89919 -10.75878 -10.67404 -10.49500 -10.12256 -10.00914 -9.85682 -9.69270 -9.12384 -8.34094 -7.52523 -5.99991 -4.03062 2.31166 3.05012 3.32011 3.38356 3.41828 4.44114 4.56993 4.68312 4.88465 4.96275 5.30635 5.34649 5.37964 5.50775 5.64249 5.83247 5.86883 5.97359 6.02794 6.03744 6.09069 6.28816 6.32362 6.37248 6.43328 6.54205 6.55222 6.68788 6.91438 7.49955 7.52664 7.68853 7.84215 7.97874 8.00585 8.42430 9.04016 9.61121 11.11125 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032077 B = 0.005991 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.700404 B = 4672.549024 C = 5062.316075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.046 4.046 3 C 0.485 3.515 4 O -0.508 6.508 5 O -0.517 6.517 6 C -0.107 4.107 7 C -0.114 4.114 8 C 0.047 3.953 9 N -0.537 5.537 10 C 0.059 3.941 11 C -0.011 4.011 12 C -0.519 4.519 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.074 3.926 21 H 0.087 0.913 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.405 0.595 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.017 0.983 34 H 0.020 0.980 35 H 0.260 0.740 36 H 0.078 0.922 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.469 6.196 -11.378 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.047 4.047 3 C 0.326 3.674 4 O -0.394 6.394 5 O -0.329 6.329 6 C -0.145 4.145 7 C -0.152 4.152 8 C -0.081 4.081 9 N -0.261 5.261 10 C -0.068 4.068 11 C -0.049 4.049 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.054 4.054 21 H 0.106 0.894 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.263 0.737 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.761 5.928 -11.176 16.608 hybrid contribution 1.692 0.224 1.049 2.003 sum -9.069 6.152 -10.127 14.922 Atomic orbital electron populations 1.21776 0.91139 1.04257 1.01537 1.20554 0.98488 0.86647 0.99051 1.23627 0.76758 0.88544 0.78458 1.90754 1.35400 1.77002 1.36260 1.84540 1.72474 1.27234 1.48619 1.21613 1.00998 0.96355 0.95536 1.21630 1.01658 0.94278 0.97611 1.22108 0.98507 0.97619 0.89875 1.62279 1.58894 1.01188 1.03691 1.22321 0.98301 0.97387 0.88787 1.19685 0.90424 0.97577 0.97248 1.21149 0.92241 1.35810 1.06633 0.92582 1.25026 0.96672 0.95634 0.97069 1.69965 1.00272 1.45143 1.37980 0.86590 0.77973 0.79681 0.83735 1.20680 1.21258 1.19824 1.21864 0.99230 0.89487 0.94843 0.89397 0.92597 0.92366 0.73730 0.91680 0.90849 0.91413 0.90861 0.93823 0.90841 0.91755 0.91841 0.96512 0.96187 0.93021 0.90356 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 7.97 37.16 0.30 -1.26 16 2 C -0.05 -0.65 0.71 -155.58 -0.11 -0.76 16 3 C 0.48 7.09 6.93 36.01 0.25 7.34 16 4 O -0.51 -9.35 16.74 -18.75 -0.31 -9.67 16 5 O -0.52 -5.58 13.26 -39.27 -0.52 -6.10 16 6 C -0.11 -1.37 4.72 -26.61 -0.13 -1.49 16 7 C -0.11 -1.41 5.74 -26.65 -0.15 -1.56 16 8 C 0.05 0.76 5.05 -3.84 -0.02 0.74 16 9 N -0.54 -9.44 4.14 -234.68 -0.97 -10.42 16 10 C 0.06 1.22 5.30 -3.82 -0.02 1.20 16 11 C -0.01 -0.29 4.27 -27.88 -0.12 -0.41 16 12 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.07 1.33 2.85 -3.84 -0.01 1.32 16 21 H 0.09 1.06 6.01 -51.93 -0.31 0.75 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 24 H 0.40 2.66 9.10 45.56 0.41 3.08 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.83 6.59 -51.93 -0.34 0.49 16 29 H 0.04 0.81 6.75 -51.93 -0.35 0.46 16 30 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 31 H 0.06 1.30 8.06 -51.93 -0.42 0.88 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.02 0.46 6.68 -51.93 -0.35 0.11 16 34 H 0.02 0.56 6.51 -51.93 -0.34 0.23 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.08 1.48 8.10 -51.93 -0.42 1.05 16 37 H 0.05 1.16 6.55 -51.93 -0.34 0.82 16 LS Contribution 293.68 15.07 4.43 4.43 Total: -1.00 -32.61 293.68 -7.04 -39.65 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.95 Total: 0.26 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.42 Total: -8.45 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.24 Total: -37.03 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.83 Total: -15.77 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.61 -7.04 -39.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062876890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.712 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds