Wall clock time and date at job start Mon Mar 30 2020 03:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.50265 * 2 1 4 4 O 1.20826 * 119.99863 * 119.92185 * 3 2 1 5 5 O 1.34235 * 120.00073 * 299.92598 * 3 2 1 6 6 C 1.53114 * 109.49922 * 239.92645 * 2 1 3 7 7 C 1.53116 * 109.16151 * 297.66853 * 6 2 1 8 8 C 1.53036 * 109.28144 * 302.35164 * 7 6 2 9 9 N 1.46840 * 109.52295 * 59.17509 * 8 7 6 10 10 C 1.46898 * 111.00086 * 174.16146 * 9 8 7 11 11 C 1.53006 * 109.47006 * 66.04921 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48508 * 109.47394 * 329.99535 * 16 14 12 20 20 C 1.46852 * 111.19878 * 298.25982 * 9 8 7 21 21 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47027 * 300.07614 * 1 2 3 23 23 H 1.09002 * 109.47021 * 60.07307 * 1 2 3 24 24 H 0.96701 * 116.99638 * 179.97438 * 5 3 2 25 25 H 1.09005 * 109.52186 * 177.76533 * 6 2 1 26 26 H 1.08997 * 109.57935 * 57.61279 * 6 2 1 27 27 H 1.09007 * 109.50468 * 182.40654 * 7 6 2 28 28 H 1.08998 * 109.53330 * 62.31342 * 7 6 2 29 29 H 1.08997 * 109.45827 * 299.16199 * 8 7 6 30 30 H 1.08998 * 109.46456 * 179.19656 * 8 7 6 31 31 H 1.09001 * 109.47392 * 306.05219 * 10 9 8 32 32 H 1.09001 * 109.47520 * 186.04942 * 10 9 8 33 33 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 34 34 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 35 35 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.45836 * 181.75698 * 20 9 8 37 37 H 1.08990 * 109.46120 * 301.72352 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0332 1.4206 0.0000 4 8 2.7269 1.8158 0.9069 5 8 1.7106 2.2469 -1.0075 6 6 2.0411 -0.7233 -1.2490 7 6 1.5758 -2.1815 -1.2111 8 6 2.0862 -2.8416 0.0717 9 7 1.5692 -2.1136 1.2375 10 6 1.9248 -2.7997 2.4868 11 6 3.4425 -2.7597 2.6765 12 6 3.8073 -3.4641 3.9578 13 1 3.0340 -3.8966 4.5753 14 6 5.1282 -3.5554 4.3423 15 7 6.0699 -3.0283 3.5906 16 14 5.5804 -4.4279 5.9309 17 1 5.8196 -5.8672 5.6544 18 1 6.8123 -3.8209 6.4957 19 1 4.4686 -4.2892 6.9056 20 6 2.0419 -0.7233 1.2477 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5150 0.8893 23 1 -0.3633 0.5127 -0.8907 24 1 2.0565 3.1488 -0.9634 25 1 3.1305 -0.6889 -1.2697 26 1 1.6445 -0.2374 -2.1405 27 1 1.9724 -2.7127 -2.0764 28 1 0.4866 -2.2171 -1.2302 29 1 3.1759 -2.8186 0.0832 30 1 1.7446 -3.8760 0.1087 31 1 1.5918 -3.8365 2.4394 32 1 1.4404 -2.3005 3.3260 33 1 3.9268 -3.2590 1.8373 34 1 3.7755 -1.7230 2.7239 35 1 6.9991 -3.0922 3.8613 36 1 1.6678 -0.2191 2.1388 37 1 3.1317 -0.7103 1.2537 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062876890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:45 Heat of formation + Delta-G solvation = -129.686564 kcal Electronic energy + Delta-G solvation = -18230.385889 eV Core-core repulsion = 15391.822338 eV Total energy + Delta-G solvation = -2838.563552 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.89585 -39.92429 -37.14755 -36.38067 -34.67606 -32.80403 -30.88064 -27.93276 -27.00143 -25.55203 -24.79800 -22.81808 -21.83601 -19.60450 -18.91404 -18.63858 -17.74603 -16.77301 -16.61616 -16.04403 -15.96433 -15.44533 -15.31251 -14.69977 -14.42274 -14.23349 -13.93424 -13.55411 -13.18800 -13.10493 -12.89293 -12.73708 -12.62345 -12.54118 -12.17271 -12.04467 -11.92573 -11.69679 -11.53590 -11.39595 -11.20728 -11.14853 -10.58223 -9.16900 -8.23613 -6.36538 1.15054 1.36687 1.38830 1.50026 1.98377 2.37505 3.08907 3.13150 3.49402 3.73578 3.87821 4.15127 4.20061 4.40275 4.46458 4.53412 4.63544 4.67102 4.79262 4.85245 4.94155 4.98857 5.01792 5.05989 5.06241 5.18117 5.31131 5.44418 5.53790 5.54202 5.56643 5.71175 5.97014 6.18521 6.29606 6.81686 6.96440 7.33287 8.87666 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032077 B = 0.005991 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.700404 B = 4672.549024 C = 5062.316075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.045 4.045 3 C 0.492 3.508 4 O -0.557 6.557 5 O -0.498 6.498 6 C -0.105 4.105 7 C -0.104 4.104 8 C 0.042 3.958 9 N -0.518 5.518 10 C 0.071 3.929 11 C 0.000 4.000 12 C -0.542 4.542 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.969 3.031 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.261 1.261 20 C 0.080 3.920 21 H 0.091 0.909 22 H 0.051 0.949 23 H 0.086 0.914 24 H 0.426 0.574 25 H 0.044 0.956 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.007 0.993 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.063 0.937 33 H -0.009 1.009 34 H -0.017 1.017 35 H 0.262 0.738 36 H 0.061 0.939 37 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.495 5.777 -12.394 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.046 4.046 3 C 0.335 3.665 4 O -0.448 6.448 5 O -0.311 6.311 6 C -0.143 4.143 7 C -0.141 4.141 8 C -0.086 4.086 9 N -0.241 5.241 10 C -0.057 4.057 11 C -0.038 4.038 12 C -0.580 4.580 13 H 0.083 0.917 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.793 3.207 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.185 1.185 20 C -0.049 4.049 21 H 0.110 0.890 22 H 0.070 0.930 23 H 0.104 0.896 24 H 0.288 0.712 25 H 0.062 0.938 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.025 0.975 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.010 0.990 34 H 0.001 0.999 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -12.818 5.526 -12.231 18.559 hybrid contribution 2.344 0.417 1.301 2.713 sum -10.474 5.943 -10.930 16.263 Atomic orbital electron populations 1.21763 0.88556 1.04878 1.02734 1.20524 1.00301 0.86321 0.97503 1.23656 0.75632 0.88993 0.78208 1.90750 1.37721 1.77950 1.38370 1.84465 1.71725 1.28413 1.46477 1.21658 0.99907 0.96845 0.95847 1.21624 1.03014 0.93614 0.95844 1.22266 0.96461 0.98694 0.91177 1.62351 1.57832 1.00913 1.02975 1.22103 0.94364 0.98532 0.90693 1.19526 0.93944 0.94631 0.95698 1.21639 0.92870 1.35933 1.07578 0.91665 1.26047 0.96609 0.96360 1.01019 1.70123 1.00720 1.46595 1.40185 0.85395 0.77805 0.78608 0.78933 1.19411 1.21029 1.18493 1.21726 0.96349 0.90085 0.96761 0.89016 0.93034 0.89562 0.71241 0.93753 0.87457 0.88998 0.88450 0.97505 0.89812 0.90542 0.91884 0.99036 0.99879 0.92890 0.92064 0.97486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 7.97 71.98 0.57 -2.00 16 2 C -0.04 -1.24 0.71 -52.88 -0.04 -1.27 16 3 C 0.49 14.11 6.93 71.24 0.49 14.61 16 4 O -0.56 -21.32 16.74 21.96 0.37 -20.95 16 5 O -0.50 -9.45 13.26 -51.46 -0.68 -10.13 16 6 C -0.11 -2.47 4.72 30.67 0.14 -2.32 16 7 C -0.10 -2.29 5.74 30.65 0.18 -2.11 16 8 C 0.04 1.34 5.05 86.33 0.44 1.78 16 9 N -0.52 -18.44 4.14 -896.39 -3.71 -22.15 16 10 C 0.07 3.02 5.30 86.31 0.46 3.48 16 11 C 0.00 0.02 4.27 29.85 0.13 0.14 16 12 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 13 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 14 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 15 N -0.94 -59.35 13.29 21.45 0.28 -59.06 16 16 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 C 0.08 2.99 2.85 86.32 0.25 3.24 16 21 H 0.09 1.89 6.01 -2.39 -0.01 1.88 16 22 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 24 H 0.43 4.53 9.10 -74.06 -0.67 3.86 16 25 H 0.04 1.22 8.14 -2.38 -0.02 1.21 16 26 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 27 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.10 1.77 6.59 -2.39 -0.02 1.75 16 29 H 0.01 0.26 6.75 -2.39 -0.02 0.25 16 30 H 0.08 2.50 8.06 -2.39 -0.02 2.48 16 31 H 0.08 3.08 8.06 -2.39 -0.02 3.06 16 32 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 33 H -0.01 -0.51 6.68 -2.39 -0.02 -0.53 16 34 H -0.02 -1.05 6.51 -2.39 -0.02 -1.07 16 35 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.06 2.45 8.10 -2.38 -0.02 2.44 16 37 H 0.01 0.32 6.55 -2.39 -0.02 0.31 16 Total: -1.00 -74.48 293.68 1.98 -72.50 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.39 Total: 7.97 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 3.31 Total: -15.65 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -3.43 Total: -81.22 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.31 Total: -31.09 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.48 1.98 -72.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062876890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.188 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds