Wall clock time and date at job start Mon Mar 30 2020 03:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.50282 * 2 1 4 4 O 1.20833 * 119.99747 * 239.92182 * 3 2 1 5 5 O 1.34230 * 120.00262 * 59.63804 * 3 2 1 6 6 C 1.53122 * 109.53090 * 120.09439 * 2 1 3 7 7 C 1.53114 * 109.16445 * 62.30938 * 6 2 1 8 8 C 1.53039 * 109.28067 * 57.64820 * 7 6 2 9 9 N 1.46846 * 109.52525 * 300.82637 * 8 7 6 10 10 C 1.46896 * 111.00087 * 185.83527 * 9 8 7 11 11 C 1.53002 * 109.47056 * 65.79112 * 10 9 8 12 12 C 1.50700 * 109.47165 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99613 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00327 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99753 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00220 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46644 * 90.00336 * 16 14 12 18 18 H 1.48503 * 109.47056 * 210.00130 * 16 14 12 19 19 H 1.48498 * 109.46898 * 330.00238 * 16 14 12 20 20 C 1.46847 * 111.19815 * 61.73867 * 9 8 7 21 21 H 1.09006 * 109.46968 * 60.00508 * 1 2 3 22 22 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47554 * 300.00714 * 1 2 3 24 24 H 0.96699 * 116.99771 * 180.27188 * 5 3 2 25 25 H 1.09007 * 109.51764 * 182.21346 * 6 2 1 26 26 H 1.09000 * 109.52524 * 302.40085 * 6 2 1 27 27 H 1.09002 * 109.50261 * 297.71152 * 7 6 2 28 28 H 1.08998 * 109.53780 * 177.61489 * 7 6 2 29 29 H 1.08996 * 109.46777 * 180.80898 * 8 7 6 30 30 H 1.09003 * 109.45733 * 60.83793 * 8 7 6 31 31 H 1.09003 * 109.47146 * 185.79088 * 10 9 8 32 32 H 1.08995 * 109.47298 * 305.78696 * 10 9 8 33 33 H 1.08997 * 109.46946 * 299.99584 * 11 10 9 34 34 H 1.08995 * 109.47406 * 59.99650 * 11 10 9 35 35 H 0.96994 * 120.00187 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.46365 * 178.24312 * 20 9 8 37 37 H 1.08994 * 109.45825 * 58.26795 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 8 2.7292 1.8149 -0.9056 5 8 1.7033 2.2494 1.0030 6 6 2.0419 -0.7236 1.2486 7 6 1.5765 -2.1818 1.2107 8 6 2.0861 -2.8417 -0.0727 9 7 1.5683 -2.1134 -1.2380 10 6 1.9231 -2.7993 -2.4876 11 6 1.2078 -4.1504 -2.5486 12 6 1.5713 -4.8537 -3.8309 13 1 2.2447 -4.3838 -4.5324 14 6 1.0441 -6.0971 -4.1087 15 7 0.2237 -6.6691 -3.2547 16 14 1.4941 -6.9686 -5.6985 17 1 2.7022 -7.8041 -5.4800 18 1 0.3649 -7.8332 -6.1257 19 1 1.7729 -5.9612 -6.7533 20 6 2.0410 -0.7231 -1.2482 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 2.0465 3.1522 0.9572 25 1 3.1312 -0.6893 1.2685 26 1 1.6449 -0.2376 2.1398 27 1 0.4872 -2.2168 1.2301 28 1 1.9731 -2.7136 2.0756 29 1 1.7444 -3.8761 -0.1097 30 1 3.1758 -2.8187 -0.0848 31 1 1.6179 -2.1879 -3.3369 32 1 3.0010 -2.9569 -2.5222 33 1 1.5131 -4.7617 -1.6994 34 1 0.1299 -3.9928 -2.5141 35 1 -0.1475 -7.5436 -3.4502 36 1 1.6664 -0.2187 -2.1390 37 1 3.1308 -0.7102 -1.2547 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062876891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:47 Heat of formation + Delta-G solvation = -106.613752 kcal Electronic energy + Delta-G solvation = -17955.079688 eV Core-core repulsion = 15117.516649 eV Total energy + Delta-G solvation = -2837.563039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.82066 -38.62911 -36.20037 -34.76392 -32.72250 -31.58631 -29.36657 -26.84609 -25.14020 -24.48186 -22.87646 -21.64991 -19.99525 -18.73424 -17.91363 -16.81852 -16.24914 -15.74623 -14.85789 -14.70393 -14.56117 -14.08076 -13.94925 -13.54859 -13.16867 -12.74371 -12.21081 -12.16415 -12.03160 -11.80104 -11.64298 -11.16484 -11.07930 -10.94829 -10.85724 -10.64976 -10.49346 -10.22795 -10.18892 -9.78387 -9.34779 -9.11061 -8.31988 -7.73846 -5.99029 -4.01084 2.14317 2.91208 3.32949 3.39271 3.42916 4.38124 4.53828 4.56583 4.76997 4.87914 5.22928 5.29826 5.36944 5.41465 5.59775 5.75033 5.79404 5.87701 5.89703 5.97435 6.01586 6.10363 6.25269 6.30083 6.38377 6.47929 6.52506 6.56033 6.97043 7.47490 7.55510 7.77341 7.83392 7.90287 8.08377 8.44440 9.06025 9.62599 11.12344 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044843 B = 0.004967 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.247624 B = 5635.716895 C = 5937.058346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.046 4.046 3 C 0.488 3.512 4 O -0.516 6.516 5 O -0.514 6.514 6 C -0.106 4.106 7 C -0.116 4.116 8 C 0.049 3.951 9 N -0.533 5.533 10 C 0.064 3.936 11 C 0.029 3.971 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.075 3.925 21 H 0.056 0.944 22 H 0.092 0.908 23 H 0.059 0.941 24 H 0.405 0.595 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.018 0.982 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.079 0.921 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 13.914 10.777 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.047 4.047 3 C 0.330 3.670 4 O -0.404 6.404 5 O -0.325 6.325 6 C -0.144 4.144 7 C -0.154 4.154 8 C -0.079 4.079 9 N -0.258 5.258 10 C -0.062 4.062 11 C -0.008 4.008 12 C -0.561 4.561 13 H 0.072 0.928 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.053 4.053 21 H 0.075 0.925 22 H 0.111 0.889 23 H 0.078 0.922 24 H 0.263 0.737 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.296 13.463 10.592 17.179 hybrid contribution 1.449 0.146 -1.035 1.786 sum 2.745 13.609 9.557 16.854 Atomic orbital electron populations 1.21798 0.90663 1.04831 1.01642 1.20545 0.98950 0.86407 0.98817 1.23661 0.76459 0.88595 0.78259 1.90713 1.35976 1.77318 1.36356 1.84554 1.72227 1.27030 1.48735 1.21630 1.00496 0.96686 0.95589 1.21650 1.02335 0.93808 0.97580 1.22189 0.96655 0.99409 0.89668 1.61975 1.59617 1.00312 1.03892 1.22334 0.97613 0.97824 0.88438 1.19099 0.96280 0.88814 0.96649 1.21198 1.27866 1.02363 1.04650 0.92813 1.24974 0.95075 0.97405 0.96767 1.69965 1.31487 1.16103 1.35711 0.86606 0.77962 0.79623 0.83877 1.20734 1.21205 1.19892 1.21876 0.97483 0.90460 0.95496 0.92489 0.88933 0.92233 0.73666 0.92043 0.90716 0.90360 0.91267 0.89052 0.95528 0.91962 0.96107 0.96416 0.95631 0.93019 0.90250 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 7.97 37.16 0.30 -1.31 16 2 C -0.05 -0.59 0.71 -155.58 -0.11 -0.71 16 3 C 0.49 6.26 6.93 36.00 0.25 6.51 16 4 O -0.52 -8.16 16.74 -18.76 -0.31 -8.48 16 5 O -0.51 -4.86 13.25 -39.26 -0.52 -5.38 16 6 C -0.11 -1.24 4.72 -26.61 -0.13 -1.36 16 7 C -0.12 -1.46 5.74 -26.65 -0.15 -1.61 16 8 C 0.05 0.79 5.29 -3.83 -0.02 0.77 16 9 N -0.53 -9.47 3.94 -234.67 -0.93 -10.40 16 10 C 0.06 1.36 4.90 -3.82 -0.02 1.34 16 11 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 12 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 20 C 0.08 1.20 3.47 -3.83 -0.01 1.18 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.09 1.23 6.01 -51.93 -0.31 0.92 16 23 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 24 H 0.41 2.07 9.10 45.56 0.41 2.49 16 25 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.99 6.58 -51.93 -0.34 0.64 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.66 6.21 -51.93 -0.32 1.34 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 1.32 7.99 -51.93 -0.41 0.90 16 32 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 37 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 LS Contribution 296.81 15.07 4.47 4.47 Total: -1.00 -31.71 296.81 -7.08 -38.79 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.07 Total: -1.65 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.44 Total: -8.05 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.19 Total: -36.34 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.83 Total: -13.86 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.71 -7.08 -38.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062876891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.824 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds