Wall clock time and date at job start Mon Mar 30 2020 03:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.50282 * 2 1 4 4 O 1.20833 * 119.99747 * 239.92182 * 3 2 1 5 5 O 1.34230 * 120.00262 * 59.63804 * 3 2 1 6 6 C 1.53122 * 109.53090 * 120.09439 * 2 1 3 7 7 C 1.53114 * 109.16445 * 62.30938 * 6 2 1 8 8 C 1.53039 * 109.28067 * 57.64820 * 7 6 2 9 9 N 1.46846 * 109.52525 * 300.82637 * 8 7 6 10 10 C 1.46896 * 111.00087 * 185.83527 * 9 8 7 11 11 C 1.53002 * 109.47056 * 65.79112 * 10 9 8 12 12 C 1.50700 * 109.47165 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99613 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00327 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99753 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00220 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46644 * 90.00336 * 16 14 12 18 18 H 1.48503 * 109.47056 * 210.00130 * 16 14 12 19 19 H 1.48498 * 109.46898 * 330.00238 * 16 14 12 20 20 C 1.46847 * 111.19815 * 61.73867 * 9 8 7 21 21 H 1.09006 * 109.46968 * 60.00508 * 1 2 3 22 22 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47554 * 300.00714 * 1 2 3 24 24 H 0.96699 * 116.99771 * 180.27188 * 5 3 2 25 25 H 1.09007 * 109.51764 * 182.21346 * 6 2 1 26 26 H 1.09000 * 109.52524 * 302.40085 * 6 2 1 27 27 H 1.09002 * 109.50261 * 297.71152 * 7 6 2 28 28 H 1.08998 * 109.53780 * 177.61489 * 7 6 2 29 29 H 1.08996 * 109.46777 * 180.80898 * 8 7 6 30 30 H 1.09003 * 109.45733 * 60.83793 * 8 7 6 31 31 H 1.09003 * 109.47146 * 185.79088 * 10 9 8 32 32 H 1.08995 * 109.47298 * 305.78696 * 10 9 8 33 33 H 1.08997 * 109.46946 * 299.99584 * 11 10 9 34 34 H 1.08995 * 109.47406 * 59.99650 * 11 10 9 35 35 H 0.96994 * 120.00187 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.46365 * 178.24312 * 20 9 8 37 37 H 1.08994 * 109.45825 * 58.26795 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0331 1.4205 0.0000 4 8 2.7292 1.8149 -0.9056 5 8 1.7033 2.2494 1.0030 6 6 2.0419 -0.7236 1.2486 7 6 1.5765 -2.1818 1.2107 8 6 2.0861 -2.8417 -0.0727 9 7 1.5683 -2.1134 -1.2380 10 6 1.9231 -2.7993 -2.4876 11 6 1.2078 -4.1504 -2.5486 12 6 1.5713 -4.8537 -3.8309 13 1 2.2447 -4.3838 -4.5324 14 6 1.0441 -6.0971 -4.1087 15 7 0.2237 -6.6691 -3.2547 16 14 1.4941 -6.9686 -5.6985 17 1 2.7022 -7.8041 -5.4800 18 1 0.3649 -7.8332 -6.1257 19 1 1.7729 -5.9612 -6.7533 20 6 2.0410 -0.7231 -1.2482 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 2.0465 3.1522 0.9572 25 1 3.1312 -0.6893 1.2685 26 1 1.6449 -0.2376 2.1398 27 1 0.4872 -2.2168 1.2301 28 1 1.9731 -2.7136 2.0756 29 1 1.7444 -3.8761 -0.1097 30 1 3.1758 -2.8187 -0.0848 31 1 1.6179 -2.1879 -3.3369 32 1 3.0010 -2.9569 -2.5222 33 1 1.5131 -4.7617 -1.6994 34 1 0.1299 -3.9928 -2.5141 35 1 -0.1475 -7.5436 -3.4502 36 1 1.6664 -0.2187 -2.1390 37 1 3.1308 -0.7102 -1.2547 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062876891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:47 Heat of formation + Delta-G solvation = -128.195704 kcal Electronic energy + Delta-G solvation = -17956.015552 eV Core-core repulsion = 15117.516649 eV Total energy + Delta-G solvation = -2838.498903 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.86329 -39.82896 -37.12807 -36.31404 -34.67670 -32.74865 -31.24632 -27.91476 -26.95265 -25.57757 -24.45704 -22.91748 -21.59137 -19.84743 -18.87195 -18.59001 -17.72639 -16.74502 -16.55414 -16.18991 -16.00209 -15.43154 -15.14379 -14.80238 -14.48311 -14.12316 -14.04357 -13.48076 -13.31554 -13.11844 -12.83530 -12.68857 -12.57673 -12.45236 -12.25041 -12.09322 -11.83059 -11.68267 -11.47765 -11.32540 -11.15664 -11.06732 -10.51453 -9.22120 -8.19103 -6.29765 1.15519 1.40766 1.41902 1.53080 1.98239 2.41459 3.10328 3.14429 3.47527 3.71336 3.86383 4.14084 4.16342 4.40536 4.42440 4.50265 4.57318 4.62003 4.72202 4.77357 4.92591 4.99184 5.01173 5.04887 5.07705 5.18162 5.31793 5.46316 5.53392 5.56998 5.68986 5.78747 6.10242 6.22955 6.33795 6.86582 6.98286 7.38960 8.92839 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044843 B = 0.004967 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.247624 B = 5635.716895 C = 5937.058346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.046 4.046 3 C 0.499 3.501 4 O -0.552 6.552 5 O -0.500 6.500 6 C -0.100 4.100 7 C -0.108 4.108 8 C 0.046 3.954 9 N -0.536 5.536 10 C 0.079 3.921 11 C 0.040 3.960 12 C -0.547 4.547 13 H 0.056 0.944 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.963 3.037 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.266 1.266 20 C 0.078 3.922 21 H 0.050 0.950 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.427 0.573 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.017 0.983 33 H 0.000 1.000 34 H -0.004 1.004 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 14.958 11.639 19.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.047 4.047 3 C 0.342 3.658 4 O -0.443 6.443 5 O -0.313 6.313 6 C -0.137 4.137 7 C -0.145 4.145 8 C -0.082 4.082 9 N -0.260 5.260 10 C -0.048 4.048 11 C 0.002 3.998 12 C -0.585 4.585 13 H 0.074 0.926 14 C -0.193 4.193 15 N -0.569 5.569 16 Si 0.788 3.212 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.190 1.190 20 C -0.050 4.050 21 H 0.070 0.930 22 H 0.097 0.903 23 H 0.103 0.897 24 H 0.289 0.711 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.018 0.982 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.587 14.542 11.486 18.599 hybrid contribution 1.337 -0.136 -1.242 1.830 sum 2.924 14.407 10.244 17.918 Atomic orbital electron populations 1.21758 0.89859 1.04216 1.02623 1.20476 0.99494 0.86906 0.97859 1.23392 0.75603 0.88607 0.78173 1.90715 1.37707 1.77954 1.37878 1.84480 1.71627 1.28296 1.46885 1.21630 1.00685 0.95680 0.95742 1.21615 1.02420 0.94551 0.95962 1.22235 0.96655 0.98333 0.90931 1.61893 1.59950 1.01286 1.02905 1.21972 0.96567 0.95879 0.90426 1.18896 0.94740 0.90865 0.95257 1.21617 1.28149 1.03123 1.05632 0.92588 1.25889 0.94784 0.98178 1.00431 1.70090 1.32414 1.16610 1.37743 0.85478 0.77938 0.78417 0.79384 1.19784 1.20569 1.19012 1.21828 0.96925 0.89195 0.97065 0.93049 0.90325 0.89730 0.71075 0.91866 0.87897 0.90227 0.88928 0.91783 0.95579 0.92226 0.96511 0.98219 0.98513 0.92721 0.91381 0.95545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 7.97 71.98 0.57 -2.29 16 2 C -0.05 -1.11 0.71 -52.88 -0.04 -1.15 16 3 C 0.50 11.68 6.93 71.23 0.49 12.17 16 4 O -0.55 -16.81 16.74 21.94 0.37 -16.44 16 5 O -0.50 -7.65 13.25 -51.41 -0.68 -8.33 16 6 C -0.10 -2.04 4.72 30.67 0.14 -1.90 16 7 C -0.11 -2.52 5.74 30.65 0.18 -2.34 16 8 C 0.05 1.51 5.29 86.33 0.46 1.97 16 9 N -0.54 -19.41 3.94 -896.37 -3.53 -22.94 16 10 C 0.08 3.46 4.90 86.30 0.42 3.88 16 11 C 0.04 2.13 4.90 29.85 0.15 2.28 16 12 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 13 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 14 C 0.01 0.31 5.46 84.65 0.46 0.78 16 15 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 16 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.08 2.48 3.47 86.33 0.30 2.78 16 21 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 22 H 0.08 2.01 6.01 -2.39 -0.01 2.00 16 23 H 0.08 1.48 8.11 -2.39 -0.02 1.46 16 24 H 0.43 2.81 9.10 -74.06 -0.67 2.14 16 25 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.87 6.58 -2.39 -0.02 1.85 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 2.43 6.21 -2.39 -0.01 2.42 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 2.60 7.99 -2.39 -0.02 2.59 16 32 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 33 H 0.00 -0.03 6.43 -2.39 -0.02 -0.04 16 34 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.07 2.29 7.99 -2.38 -0.02 2.27 16 37 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 Total: -1.00 -69.21 296.81 2.22 -66.99 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.38 Total: 5.49 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 3.37 Total: -15.18 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -3.25 Total: -79.16 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.31 Total: -24.77 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -69.21 2.22 -66.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062876891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.201 kcal (2) G-P(sol) polarization free energy of solvation -69.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds