Wall clock time and date at job start Mon Mar 30 2020 03:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47096 * 2 1 4 4 C 1.50703 * 109.53457 * 60.09927 * 3 2 1 5 5 O 1.20824 * 119.99711 * 119.89684 * 4 3 2 6 6 O 1.34222 * 119.99984 * 299.89878 * 4 3 2 7 7 C 1.53111 * 109.50378 * 300.00048 * 3 2 1 8 8 C 1.53122 * 109.16056 * 297.71041 * 7 3 2 9 9 C 1.53029 * 109.27997 * 302.34581 * 8 7 3 10 10 N 1.46852 * 109.52318 * 59.17935 * 9 8 7 11 11 C 1.46904 * 111.00201 * 174.15878 * 10 9 8 12 12 C 1.50696 * 109.46794 * 66.04293 * 11 10 9 13 13 H 1.07999 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99717 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.46845 * 111.19513 * 298.25713 * 10 9 8 21 21 H 1.08997 * 109.47165 * 299.99504 * 1 2 3 22 22 H 1.09000 * 109.47048 * 59.99825 * 1 2 3 23 23 H 1.09005 * 109.46865 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47117 * 240.00041 * 2 1 3 25 25 H 1.09000 * 109.47048 * 120.00175 * 2 1 3 26 26 H 0.96705 * 117.00361 * 179.97438 * 6 4 3 27 27 H 1.09008 * 109.52081 * 177.80834 * 7 3 2 28 28 H 1.08995 * 109.57871 * 57.65234 * 7 3 2 29 29 H 1.09005 * 109.50345 * 182.40680 * 8 7 3 30 30 H 1.08998 * 109.49915 * 62.29192 * 8 7 3 31 31 H 1.08998 * 109.46675 * 299.16490 * 9 8 7 32 32 H 1.09001 * 109.46252 * 179.19327 * 9 8 7 33 33 H 1.09005 * 109.47078 * 306.04577 * 11 10 9 34 34 H 1.09002 * 109.47005 * 186.04793 * 11 10 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46026 * 181.75764 * 20 10 9 37 37 H 1.08996 * 109.46462 * 301.72043 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5404 2.1536 1.2312 5 8 2.3274 2.6109 2.0258 6 8 0.2213 2.2788 1.4451 7 6 1.5300 2.1650 -1.2499 8 6 2.0910 1.4722 -2.4949 9 6 3.6198 1.4722 -2.4275 10 7 4.0576 0.7690 -1.2150 11 6 5.5196 0.6283 -1.1868 12 6 6.1528 1.9899 -1.0600 13 1 5.5314 2.8715 -1.0054 14 6 7.5256 2.1101 -1.0127 15 7 8.0783 3.2983 -0.9016 16 14 8.6004 0.5851 -1.1065 17 1 8.8471 0.0683 0.2636 18 1 7.9132 -0.4561 -1.9120 19 1 9.8954 0.9309 -1.7458 20 6 3.5704 1.4433 -0.0049 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 -0.0511 2.7424 2.2489 27 1 1.8608 3.2035 -1.2307 28 1 0.4409 2.1300 -1.2731 29 1 1.7660 2.0078 -3.3869 30 1 1.7284 0.4450 -2.5342 31 1 3.9822 2.4999 -2.4022 32 1 4.0220 0.9669 -3.3056 33 1 5.8570 0.1552 -2.1090 34 1 5.8090 0.0122 -0.3354 35 1 9.0440 3.3828 -0.8680 36 1 3.9367 0.9171 0.8766 37 1 3.9331 2.4711 0.0091 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062877180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:47 Heat of formation + Delta-G solvation = -97.787396 kcal Electronic energy + Delta-G solvation = -18657.681880 eV Core-core repulsion = 15820.501580 eV Total energy + Delta-G solvation = -2837.180300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.70454 -38.36881 -35.99559 -34.79924 -32.47881 -31.47098 -29.52760 -27.40175 -24.46841 -23.99157 -22.79848 -21.46090 -20.42212 -18.33307 -17.73862 -16.80794 -16.43712 -15.62487 -14.97994 -14.40681 -14.32102 -13.79495 -13.60719 -13.23203 -13.05273 -12.82222 -12.32917 -12.25704 -11.98500 -11.63270 -11.45067 -11.23608 -10.82815 -10.70520 -10.61222 -10.45454 -10.38933 -10.28226 -9.95932 -9.80963 -9.76110 -9.45865 -8.58492 -7.23803 -6.09113 -4.09249 2.44190 3.18363 3.28884 3.36255 3.39050 4.40355 4.82188 4.85673 5.05855 5.08968 5.23937 5.38883 5.45708 5.58397 5.67585 5.78989 5.86824 6.01941 6.11159 6.15505 6.25796 6.29818 6.32554 6.40618 6.60311 6.61913 6.67368 6.76490 6.82988 6.95543 7.05612 7.55260 7.98902 8.04486 8.12993 8.44983 8.93268 9.53138 11.03921 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031652 B = 0.007265 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.412482 B = 3852.982465 C = 4131.277333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.044 4.044 4 C 0.486 3.514 5 O -0.509 6.509 6 O -0.512 6.512 7 C -0.107 4.107 8 C -0.115 4.115 9 C 0.056 3.944 10 N -0.530 5.530 11 C 0.155 3.845 12 C -0.552 4.552 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.879 3.121 17 H -0.276 1.276 18 H -0.263 1.263 19 H -0.287 1.287 20 C 0.084 3.916 21 H 0.072 0.928 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.398 0.602 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.896 -5.221 0.100 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.141 4.141 3 C -0.046 4.046 4 C 0.327 3.673 5 O -0.395 6.395 6 O -0.324 6.324 7 C -0.145 4.145 8 C -0.153 4.153 9 C -0.073 4.073 10 N -0.253 5.253 11 C 0.029 3.971 12 C -0.591 4.591 13 H 0.093 0.907 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.188 1.188 19 H -0.213 1.213 20 C -0.045 4.045 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.113 0.887 25 H 0.079 0.921 26 H 0.256 0.744 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.562 -5.684 -0.044 16.568 hybrid contribution 1.025 0.607 0.660 1.362 sum -14.537 -5.077 0.617 15.411 Atomic orbital electron populations 1.22126 0.95779 1.01075 1.03170 1.21490 0.95384 0.93283 1.03960 1.20707 0.98004 0.95997 0.89866 1.23699 0.79573 0.76517 0.87482 1.90740 1.56636 1.45513 1.46625 1.84678 1.26805 1.72705 1.48176 1.21638 1.00537 0.99054 0.93259 1.21653 0.96550 1.00811 0.96280 1.21961 0.93118 0.98479 0.93711 1.62337 1.13782 1.48574 1.00644 1.20180 0.83045 0.96845 0.97067 1.21693 0.92536 0.93300 1.51548 0.90720 1.24976 0.98114 0.95809 0.94165 1.69934 1.11005 1.22662 1.50044 0.86796 0.80022 0.83800 0.78773 1.20187 1.18801 1.21328 1.21722 0.88449 0.99989 0.94339 0.90960 0.92491 0.93286 0.88708 0.92129 0.74410 0.91956 0.90815 0.91791 0.91126 0.93778 0.91398 0.95063 0.95604 0.92692 0.90896 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.05 37.16 0.34 -1.48 16 2 C -0.10 -1.40 4.54 -26.73 -0.12 -1.52 16 3 C -0.04 -0.69 0.51 -155.58 -0.08 -0.77 16 4 C 0.49 7.55 6.86 36.01 0.25 7.80 16 5 O -0.51 -9.87 16.74 -18.75 -0.31 -10.19 16 6 O -0.51 -5.75 10.29 -39.24 -0.40 -6.16 16 7 C -0.11 -1.51 4.43 -26.61 -0.12 -1.63 16 8 C -0.12 -1.62 5.74 -26.65 -0.15 -1.77 16 9 C 0.06 1.02 5.14 -3.83 -0.02 1.00 16 10 N -0.53 -10.70 4.14 -236.11 -0.98 -11.68 16 11 C 0.16 3.70 4.20 -4.98 -0.02 3.68 16 12 C -0.55 -15.46 8.29 -34.44 -0.29 -15.75 16 13 H 0.07 2.29 6.08 -52.49 -0.32 1.97 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 16 Si 0.88 21.52 27.47 -169.99 -4.67 16.86 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 C 0.08 1.68 3.02 -3.83 -0.01 1.66 16 21 H 0.07 0.79 5.34 -51.93 -0.28 0.52 16 22 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.09 1.33 6.01 -51.93 -0.31 1.01 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.40 2.84 9.10 45.56 0.41 3.25 16 27 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.07 0.89 6.32 -51.93 -0.33 0.56 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.92 6.58 -51.93 -0.34 0.58 16 31 H 0.04 0.93 7.03 -51.93 -0.37 0.56 16 32 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 33 H 0.03 0.75 7.12 -51.93 -0.37 0.38 16 34 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 37 H 0.06 1.30 6.51 -51.93 -0.34 0.96 16 LS Contribution 281.68 15.07 4.24 4.24 Total: -1.00 -32.13 281.68 -6.33 -38.46 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.66 Total: 2.16 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.32 Total: -6.78 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.20 Total: -38.60 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.72 Total: -16.35 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.13 -6.33 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062877180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.328 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds