Wall clock time and date at job start Mon Mar 30 2020 03:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47096 * 2 1 4 4 C 1.50703 * 109.53457 * 60.09927 * 3 2 1 5 5 O 1.20824 * 119.99711 * 119.89684 * 4 3 2 6 6 O 1.34222 * 119.99984 * 299.89878 * 4 3 2 7 7 C 1.53111 * 109.50378 * 300.00048 * 3 2 1 8 8 C 1.53122 * 109.16056 * 297.71041 * 7 3 2 9 9 C 1.53029 * 109.27997 * 302.34581 * 8 7 3 10 10 N 1.46852 * 109.52318 * 59.17935 * 9 8 7 11 11 C 1.46904 * 111.00201 * 174.15878 * 10 9 8 12 12 C 1.50696 * 109.46794 * 66.04293 * 11 10 9 13 13 H 1.07999 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99717 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.46845 * 111.19513 * 298.25713 * 10 9 8 21 21 H 1.08997 * 109.47165 * 299.99504 * 1 2 3 22 22 H 1.09000 * 109.47048 * 59.99825 * 1 2 3 23 23 H 1.09005 * 109.46865 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47117 * 240.00041 * 2 1 3 25 25 H 1.09000 * 109.47048 * 120.00175 * 2 1 3 26 26 H 0.96705 * 117.00361 * 179.97438 * 6 4 3 27 27 H 1.09008 * 109.52081 * 177.80834 * 7 3 2 28 28 H 1.08995 * 109.57871 * 57.65234 * 7 3 2 29 29 H 1.09005 * 109.50345 * 182.40680 * 8 7 3 30 30 H 1.08998 * 109.49915 * 62.29192 * 8 7 3 31 31 H 1.08998 * 109.46675 * 299.16490 * 9 8 7 32 32 H 1.09001 * 109.46252 * 179.19327 * 9 8 7 33 33 H 1.09005 * 109.47078 * 306.04577 * 11 10 9 34 34 H 1.09002 * 109.47005 * 186.04793 * 11 10 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46026 * 181.75764 * 20 10 9 37 37 H 1.08996 * 109.46462 * 301.72043 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5404 2.1536 1.2312 5 8 2.3274 2.6109 2.0258 6 8 0.2213 2.2788 1.4451 7 6 1.5300 2.1650 -1.2499 8 6 2.0910 1.4722 -2.4949 9 6 3.6198 1.4722 -2.4275 10 7 4.0576 0.7690 -1.2150 11 6 5.5196 0.6283 -1.1868 12 6 6.1528 1.9899 -1.0600 13 1 5.5314 2.8715 -1.0054 14 6 7.5256 2.1101 -1.0127 15 7 8.0783 3.2983 -0.9016 16 14 8.6004 0.5851 -1.1065 17 1 8.8471 0.0683 0.2636 18 1 7.9132 -0.4561 -1.9120 19 1 9.8954 0.9309 -1.7458 20 6 3.5704 1.4433 -0.0049 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 -0.0511 2.7424 2.2489 27 1 1.8608 3.2035 -1.2307 28 1 0.4409 2.1300 -1.2731 29 1 1.7660 2.0078 -3.3869 30 1 1.7284 0.4450 -2.5342 31 1 3.9822 2.4999 -2.4022 32 1 4.0220 0.9669 -3.3056 33 1 5.8570 0.1552 -2.1090 34 1 5.8090 0.0122 -0.3354 35 1 9.0440 3.3828 -0.8680 36 1 3.9367 0.9171 0.8766 37 1 3.9331 2.4711 0.0091 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062877180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:47 Heat of formation + Delta-G solvation = -121.679162 kcal Electronic energy + Delta-G solvation = -18658.717904 eV Core-core repulsion = 15820.501580 eV Total energy + Delta-G solvation = -2838.216325 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.98716 -39.77334 -37.19099 -36.34198 -34.43704 -32.93074 -30.78064 -29.29698 -25.84222 -25.62448 -24.02257 -22.95905 -21.94041 -19.85591 -18.93916 -18.76486 -17.79460 -16.85643 -16.54763 -16.02795 -15.88892 -15.39054 -15.04825 -14.60448 -14.52324 -14.18724 -13.95729 -13.56999 -13.35809 -13.18704 -12.97238 -12.69661 -12.40856 -12.19174 -12.00800 -11.93935 -11.83333 -11.74434 -11.60845 -11.36391 -11.10373 -11.04391 -10.81484 -9.05291 -8.33841 -6.39767 1.19064 1.34378 1.35583 1.47761 2.03402 2.32108 3.01314 3.30539 3.56273 3.79254 3.86788 4.20418 4.23828 4.47635 4.50731 4.60707 4.69842 4.78263 4.86428 4.89735 4.95104 5.01074 5.04761 5.15431 5.16877 5.19321 5.27677 5.41153 5.46423 5.52482 5.59819 5.74492 6.04376 6.27925 6.37443 6.66915 7.01212 7.26955 8.83026 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031652 B = 0.007265 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.412482 B = 3852.982465 C = 4131.277333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.098 4.098 3 C -0.043 4.043 4 C 0.494 3.506 5 O -0.558 6.558 6 O -0.489 6.489 7 C -0.104 4.104 8 C -0.104 4.104 9 C 0.052 3.948 10 N -0.515 5.515 11 C 0.159 3.841 12 C -0.553 4.553 13 H 0.028 0.972 14 C 0.007 3.993 15 N -0.950 5.950 16 Si 0.953 3.047 17 H -0.270 1.270 18 H -0.238 1.238 19 H -0.283 1.283 20 C 0.091 3.909 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.052 0.948 26 H 0.421 0.579 27 H 0.041 0.959 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.003 0.997 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.052 0.948 37 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.207 -7.731 -0.816 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 C -0.044 4.044 4 C 0.338 3.662 5 O -0.449 6.449 6 O -0.302 6.302 7 C -0.142 4.142 8 C -0.141 4.141 9 C -0.076 4.076 10 N -0.238 5.238 11 C 0.032 3.968 12 C -0.592 4.592 13 H 0.046 0.954 14 C -0.191 4.191 15 N -0.591 5.591 16 Si 0.776 3.224 17 H -0.195 1.195 18 H -0.161 1.161 19 H -0.208 1.208 20 C -0.038 4.038 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.282 0.718 27 H 0.060 0.940 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.022 0.978 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -17.942 -8.201 -0.965 19.750 hybrid contribution 1.656 1.499 0.982 2.440 sum -16.286 -6.702 0.017 17.611 Atomic orbital electron populations 1.22074 0.93087 1.02487 1.03756 1.21477 0.97563 0.90871 1.03646 1.20631 0.94428 0.98320 0.91033 1.23611 0.80471 0.75452 0.86706 1.90737 1.58209 1.47701 1.48264 1.84596 1.23820 1.72372 1.49447 1.21682 1.02546 0.97622 0.92326 1.21631 0.92530 1.02683 0.97289 1.22099 0.96759 0.95876 0.92898 1.62391 1.11370 1.48505 1.01504 1.20079 0.85258 0.94167 0.97323 1.21932 0.92488 0.94005 1.50735 0.95379 1.26015 0.99827 0.99505 0.93764 1.70101 1.11519 1.25533 1.51910 0.85621 0.77810 0.79600 0.79361 1.19545 1.16121 1.20850 1.21546 0.92290 0.96383 0.93549 0.90916 0.91255 0.91553 0.88696 0.92872 0.71791 0.94010 0.87198 0.89113 0.88736 0.97813 0.90607 0.94027 0.95499 0.92524 0.92914 0.97790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.05 71.98 0.65 -2.11 16 2 C -0.10 -2.39 4.54 30.59 0.14 -2.25 16 3 C -0.04 -1.30 0.51 -52.88 -0.03 -1.32 16 4 C 0.49 15.09 6.86 71.24 0.49 15.58 16 5 O -0.56 -22.45 16.74 21.97 0.37 -22.08 16 6 O -0.49 -9.65 10.29 -51.34 -0.53 -10.18 16 7 C -0.10 -2.74 4.43 30.67 0.14 -2.60 16 8 C -0.10 -2.64 5.74 30.64 0.18 -2.46 16 9 C 0.05 1.90 5.14 86.32 0.44 2.34 16 10 N -0.52 -20.99 4.14 -900.92 -3.73 -24.72 16 11 C 0.16 7.67 4.20 85.55 0.36 8.03 16 12 C -0.55 -32.50 8.29 25.60 0.21 -32.29 16 13 H 0.03 1.87 6.08 -2.91 -0.02 1.85 16 14 C 0.01 0.39 5.47 84.66 0.46 0.85 16 15 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 16 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 C 0.09 3.83 3.02 86.33 0.26 4.09 16 21 H 0.07 1.28 5.34 -2.39 -0.01 1.27 16 22 H 0.07 1.07 6.38 -2.39 -0.02 1.05 16 23 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.09 2.33 6.01 -2.39 -0.01 2.32 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.42 4.79 9.10 -74.05 -0.67 4.12 16 27 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.11 2.15 6.32 -2.39 -0.02 2.14 16 29 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.09 2.04 6.58 -2.39 -0.02 2.02 16 31 H 0.00 0.15 7.03 -2.39 -0.02 0.14 16 32 H 0.08 2.63 8.06 -2.39 -0.02 2.61 16 33 H 0.04 1.93 7.12 -2.38 -0.02 1.91 16 34 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 35 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 36 H 0.05 2.36 8.10 -2.39 -0.02 2.34 16 37 H 0.00 0.20 6.51 -2.39 -0.02 0.18 16 Total: -1.00 -74.93 281.68 1.94 -72.99 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.35 Total: 10.43 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 3.30 Total: -12.14 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -3.43 Total: -85.63 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.16 Total: -32.26 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -74.93 1.94 -72.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062877180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.687 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds