Wall clock time and date at job start Mon Mar 30 2020 03:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47113 * 2 1 4 4 C 1.50699 * 109.50145 * 299.92025 * 3 2 1 5 5 O 1.20826 * 119.99765 * 240.07560 * 4 3 2 6 6 O 1.34228 * 120.00411 * 60.08225 * 4 3 2 7 7 C 1.53119 * 109.50399 * 59.99477 * 3 2 1 8 8 C 1.53120 * 109.16026 * 177.63519 * 7 3 2 9 9 C 1.53031 * 109.27889 * 302.34545 * 8 7 3 10 10 N 1.46845 * 109.52355 * 59.17893 * 9 8 7 11 11 C 1.46902 * 111.00362 * 174.15705 * 10 9 8 12 12 C 1.50706 * 109.46580 * 66.04511 * 11 10 9 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99398 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99350 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.46844 * 111.20123 * 298.25865 * 10 9 8 21 21 H 1.08996 * 109.47725 * 300.00215 * 1 2 3 22 22 H 1.09006 * 109.46795 * 60.00284 * 1 2 3 23 23 H 1.08998 * 109.47211 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47317 * 239.99575 * 2 1 3 25 25 H 1.09006 * 109.46795 * 119.99716 * 2 1 3 26 26 H 0.96694 * 116.99966 * 180.02562 * 6 4 3 27 27 H 1.09007 * 109.52214 * 57.73013 * 7 3 2 28 28 H 1.09003 * 109.52822 * 297.54521 * 7 3 2 29 29 H 1.09009 * 109.49913 * 182.40768 * 8 7 3 30 30 H 1.09001 * 109.50434 * 62.29276 * 8 7 3 31 31 H 1.09003 * 109.46695 * 299.16465 * 9 8 7 32 32 H 1.09005 * 109.45457 * 179.19056 * 9 8 7 33 33 H 1.09000 * 109.47263 * 306.05115 * 11 10 9 34 34 H 1.08993 * 109.47737 * 186.04677 * 11 10 9 35 35 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.46537 * 181.75262 * 20 10 9 37 37 H 1.09001 * 109.45812 * 301.72666 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5396 2.1530 -1.2312 5 8 2.3261 2.6107 -2.0261 6 8 0.2203 2.2774 -1.4448 7 6 1.5299 2.1650 1.2499 8 6 2.0928 3.5889 1.2721 9 6 3.6215 3.5284 1.2398 10 7 4.0594 2.8287 0.0254 11 6 5.5216 2.8725 -0.1093 12 6 6.1528 2.0816 1.0075 13 1 5.5300 1.5947 1.7434 14 6 7.5253 1.9787 1.0891 15 7 8.0761 1.2881 2.0634 16 14 8.6025 2.8202 -0.1841 17 1 8.8487 1.8912 -1.3161 18 1 7.9173 4.0391 -0.6843 19 1 9.8975 3.1994 0.4358 20 6 3.5703 1.4442 0.0045 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 -0.0525 2.7407 -2.2485 27 1 1.8591 1.6292 2.1403 28 1 0.4408 2.2042 1.2292 29 1 1.7677 4.0945 2.1815 30 1 1.7317 4.1366 0.4017 31 1 3.9825 2.9925 2.1178 32 1 4.0250 4.5410 1.2411 33 1 5.8603 3.9073 -0.0582 34 1 5.8113 2.4424 -1.0680 35 1 9.0417 1.2154 2.1206 36 1 3.9367 0.9430 -0.8913 37 1 3.9315 0.9182 0.8883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062877181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:49 Heat of formation + Delta-G solvation = -96.228814 kcal Electronic energy + Delta-G solvation = -18766.477844 eV Core-core repulsion = 15929.365129 eV Total energy + Delta-G solvation = -2837.112715 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60850 -37.95891 -35.73187 -34.91467 -32.73318 -31.60289 -29.22970 -27.28537 -24.40843 -23.92658 -22.77744 -21.58029 -19.92223 -19.06191 -17.45020 -16.82072 -16.06589 -15.31451 -15.05229 -14.33220 -14.21303 -13.77297 -13.61020 -13.18136 -13.14393 -12.76221 -12.32495 -12.03433 -11.92136 -11.64923 -11.36512 -11.16875 -10.99119 -10.79471 -10.62939 -10.53313 -10.37695 -10.06286 -9.86463 -9.79025 -9.71892 -9.42360 -8.57911 -7.08500 -6.09875 -4.09290 2.71652 3.30322 3.35674 3.37490 3.43357 4.41925 4.71942 4.84705 5.01349 5.21458 5.27654 5.35845 5.44553 5.52323 5.61389 5.82928 5.92222 5.96705 6.03971 6.15023 6.20900 6.23105 6.29779 6.40524 6.52000 6.61582 6.65120 6.79403 6.87162 7.02988 7.14864 7.58313 8.10442 8.18314 8.35867 8.45945 8.91754 9.54030 11.02924 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033825 B = 0.007224 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.586179 B = 3875.159011 C = 3988.832742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 C -0.044 4.044 4 C 0.486 3.514 5 O -0.482 6.482 6 O -0.521 6.521 7 C -0.107 4.107 8 C -0.121 4.121 9 C 0.057 3.943 10 N -0.523 5.523 11 C 0.157 3.843 12 C -0.551 4.551 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.900 5.900 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.263 1.263 19 H -0.288 1.288 20 C 0.083 3.917 21 H 0.057 0.943 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.394 0.606 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.071 0.929 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.824 0.276 -3.493 16.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.151 4.151 3 C -0.046 4.046 4 C 0.326 3.674 5 O -0.366 6.366 6 O -0.334 6.334 7 C -0.144 4.144 8 C -0.159 4.159 9 C -0.072 4.072 10 N -0.246 5.246 11 C 0.030 3.970 12 C -0.590 4.590 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.539 5.539 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.188 1.188 19 H -0.214 1.214 20 C -0.046 4.046 21 H 0.076 0.924 22 H 0.095 0.905 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.252 0.748 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.472 0.406 -3.697 15.912 hybrid contribution 1.020 0.245 -0.383 1.117 sum -14.451 0.652 -4.080 15.030 Atomic orbital electron populations 1.22067 0.94993 1.01226 1.03590 1.21538 0.96649 0.93768 1.03194 1.20833 0.97774 0.94941 0.91009 1.23310 0.79275 0.77301 0.87465 1.90738 1.56287 1.43929 1.45663 1.84666 1.27455 1.73106 1.48161 1.21693 1.00399 0.96300 0.96052 1.21693 0.96947 0.95983 1.01268 1.21946 0.92877 0.99179 0.93162 1.62335 1.13593 1.13176 1.35485 1.20142 0.83217 0.96989 0.96611 1.21730 0.92494 1.32762 1.11994 0.90733 1.24956 0.98124 0.94607 0.95327 1.69931 1.11061 1.40943 1.31917 0.86799 0.79942 0.80843 0.81888 1.20178 1.18790 1.21353 1.21806 0.88507 0.92063 1.02211 0.92412 0.90479 0.93187 0.91564 0.90380 0.74790 0.90727 0.90951 0.91721 0.92316 0.93801 0.91698 0.95369 0.95585 0.92725 0.91018 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.04 37.16 0.34 -1.40 16 2 C -0.11 -1.45 4.99 -26.73 -0.13 -1.59 16 3 C -0.04 -0.68 0.52 -155.58 -0.08 -0.76 16 4 C 0.49 7.64 5.57 36.01 0.20 7.84 16 5 O -0.48 -9.44 16.00 -18.75 -0.30 -9.74 16 6 O -0.52 -6.07 10.22 -39.25 -0.40 -6.47 16 7 C -0.11 -1.50 4.31 -26.61 -0.11 -1.62 16 8 C -0.12 -1.87 5.84 -26.65 -0.16 -2.02 16 9 C 0.06 1.11 5.14 -3.84 -0.02 1.09 16 10 N -0.52 -11.36 3.72 -236.12 -0.88 -12.24 16 11 C 0.16 3.93 4.20 -4.97 -0.02 3.91 16 12 C -0.55 -15.38 8.29 -34.44 -0.29 -15.67 16 13 H 0.07 2.22 6.08 -52.49 -0.32 1.90 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 16 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 C 0.08 1.64 3.28 -3.84 -0.01 1.62 16 21 H 0.06 0.59 6.49 -51.93 -0.34 0.26 16 22 H 0.08 0.84 5.33 -51.93 -0.28 0.56 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.39 3.06 9.10 45.56 0.41 3.48 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.88 6.50 -51.93 -0.34 0.54 16 29 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.06 0.94 7.35 -51.93 -0.38 0.55 16 31 H 0.04 0.93 7.03 -51.93 -0.37 0.56 16 32 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 33 H 0.03 0.72 7.12 -51.93 -0.37 0.35 16 34 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.50 8.06 -51.93 -0.42 1.08 16 37 H 0.06 1.25 6.57 -51.93 -0.34 0.91 16 LS Contribution 283.07 15.07 4.27 4.27 Total: -1.00 -32.32 283.07 -6.42 -38.74 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.82 Total: 1.50 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -0.38 Total: -6.60 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.11 Total: -38.88 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.70 Total: -16.21 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.32 -6.42 -38.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062877181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.489 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds